Citrus tristeza virus: Evolution of Complex and Varied Genotypic Groups
Identifieur interne : 000F08 ( Pmc/Curation ); précédent : 000F07; suivant : 000F09Citrus tristeza virus: Evolution of Complex and Varied Genotypic Groups
Auteurs : S. J. Harper [États-Unis]Source :
- Frontiers in Microbiology [ 1664-302X ] ; 2013.
Abstract
Amongst the Closteroviridae,
Url:
DOI: 10.3389/fmicb.2013.00093
PubMed: 23630519
PubMed Central: 3632782
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en"><italic>Citrus tristeza virus</italic>: Evolution of Complex and Varied Genotypic Groups</title><author><name sortKey="Harper, S J" sort="Harper, S J" uniqKey="Harper S" first="S. J." last="Harper">S. J. Harper</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Citrus Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida</institution><country>Lake Alfred, FL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23630519</idno><idno type="pmc">3632782</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632782</idno><idno type="RBID">PMC:3632782</idno><idno type="doi">10.3389/fmicb.2013.00093</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000F09</idno><idno type="wicri:Area/Pmc/Curation">000F08</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>Citrus tristeza virus</italic>: Evolution of Complex and Varied Genotypic Groups</title><author><name sortKey="Harper, S J" sort="Harper, S J" uniqKey="Harper S" first="S. J." last="Harper">S. J. Harper</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Citrus Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida</institution><country>Lake Alfred, FL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Microbiology</title><idno type="eISSN">1664-302X</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Amongst the Closteroviridae, <italic>Citrus tristeza virus</italic> (CTV) is almost unique in possessing a number of distinct and characterized strains, isolates of which produce a wide range of phenotype combinations among its different hosts. There is little understanding to connect genotypes to phenotypes, and to complicate matters more, these genotypes are found throughout the world as members of mixed populations within a single host plant. There is essentially no understanding of how combinations of genotypes affect symptom expression and disease severity. We know little about the evolution of the genotypes that have been characterized to date, little about the biological role of their diversity and particularly, about the effects of recombination. Additionally, genotype grouping has not been standardized. In this study we utilized an extensive array of CTV genomic information to classify the major genotypes, and to determine the major evolutionary processes that led to their formation and subsequent retention. Our analyses suggest that three major processes act on these genotypes: (1) ancestral diversification of the major CTV lineages, followed by (2) conservation and co-evolution of the major functional domains within, though not between CTV genotypes, and (3) extensive recombination between lineages that have given rise to new genotypes that have subsequently been retained within the global population. The effects of genotype diversity and host-interaction are discussed, as is a proposal for standardizing the classification of existing and novel CTV genotypes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Albiach Marti, M R" uniqKey="Albiach Marti M">M. R. Albiach-Marti</name></author><author><name sortKey="Mawassi, M" uniqKey="Mawassi M">M. Mawassi</name></author><author><name sortKey="Gowda, S" uniqKey="Gowda S">S. Gowda</name></author><author><name sortKey="Satanarayana, T" uniqKey="Satanarayana T">T. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Microbiol</journal-id><journal-id journal-id-type="iso-abbrev">Front Microbiol</journal-id><journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id><journal-title-group><journal-title>Frontiers in Microbiology</journal-title></journal-title-group><issn pub-type="epub">1664-302X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23630519</article-id><article-id pub-id-type="pmc">3632782</article-id><article-id pub-id-type="doi">10.3389/fmicb.2013.00093</article-id><article-categories><subj-group subj-group-type="heading"><subject>Microbiology</subject><subj-group><subject>Original Research</subject></subj-group></subj-group></article-categories><title-group><article-title><italic>Citrus tristeza virus</italic>: Evolution of Complex and Varied Genotypic Groups</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Harper</surname><given-names>S. J.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn001">*</xref></contrib></contrib-group><aff id="aff1"><sup>1</sup><institution>Citrus Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida</institution><country>Lake Alfred, FL, USA</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: Pedro Moreno, Instituto Valenciano de Investigaciones Agrarias, Spain</p></fn><fn fn-type="edited-by"><p>Reviewed by: Ana Grande-Pérez, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora,” Universidad de Málaga-CSIC, Spain; Luis Rubio, Instituto Valenciano de Investigaciones Agrarias, Spain</p></fn><corresp id="fn001">*Correspondence: S. J. Harper, Citrus Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, 700 Experiment Station Road, lfred, FL 33850, USA. e-mail: <email xlink:type="simple">sjharper@ufl.edu</email></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Frontiers in Virology, a specialty of Frontiers in Microbiology.</p></fn></author-notes><pub-date pub-type="epub"><day>23</day><month>4</month><year>2013</year></pub-date><pub-date pub-type="collection"><year>2013</year></pub-date><volume>4</volume><elocation-id>93</elocation-id><history><date date-type="received"><day>31</day><month>1</month><year>2013</year></date><date date-type="accepted"><day>03</day><month>4</month><year>2013</year></date></history><permissions><copyright-statement>Copyright © 2013 Harper.</copyright-statement><copyright-year>2013</copyright-year><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.</license-p></license></permissions><abstract><p>Amongst the Closteroviridae, <italic>Citrus tristeza virus</italic> (CTV) is almost unique in possessing a number of distinct and characterized strains, isolates of which produce a wide range of phenotype combinations among its different hosts. There is little understanding to connect genotypes to phenotypes, and to complicate matters more, these genotypes are found throughout the world as members of mixed populations within a single host plant. There is essentially no understanding of how combinations of genotypes affect symptom expression and disease severity. We know little about the evolution of the genotypes that have been characterized to date, little about the biological role of their diversity and particularly, about the effects of recombination. Additionally, genotype grouping has not been standardized. In this study we utilized an extensive array of CTV genomic information to classify the major genotypes, and to determine the major evolutionary processes that led to their formation and subsequent retention. Our analyses suggest that three major processes act on these genotypes: (1) ancestral diversification of the major CTV lineages, followed by (2) conservation and co-evolution of the major functional domains within, though not between CTV genotypes, and (3) extensive recombination between lineages that have given rise to new genotypes that have subsequently been retained within the global population. The effects of genotype diversity and host-interaction are discussed, as is a proposal for standardizing the classification of existing and novel CTV genotypes.</p></abstract><kwd-group><kwd><italic>Citrus tristeza virus</italic></kwd><kwd>evolution</kwd><kwd>strain</kwd><kwd>genotype</kwd><kwd>divergence</kwd><kwd>recombination</kwd></kwd-group><counts><fig-count count="4"></fig-count><table-count count="7"></table-count><equation-count count="0"></equation-count><ref-count count="128"></ref-count><page-count count="18"></page-count><word-count count="15888"></word-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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