Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening
Identifieur interne : 001966 ( Ncbi/Merge ); précédent : 001965; suivant : 001967Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening
Auteurs : Ya-Jian Zhang [République populaire de Chine] ; Xing-Jian Wang [République populaire de Chine] ; Ju-Xun Wu [République populaire de Chine] ; Shan-Yan Chen [République populaire de Chine] ; Hong Chen [République populaire de Chine] ; Li-Jun Chai [République populaire de Chine] ; Hua-Lin Yi [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
English descriptors
- KwdEn :
- Abscisic Acid (biosynthesis), Base Sequence, Citrus sinensis (genetics), Citrus sinensis (growth & development), Cyclopentanes (metabolism), Gene Expression Profiling, Gene Expression Regulation, Plant, Oxylipins (metabolism), Phosphoprotein Phosphatases (biosynthesis), Phosphoprotein Phosphatases (genetics), Plant Proteins (genetics), Protein-Serine-Threonine Kinases (biosynthesis), Protein-Serine-Threonine Kinases (genetics), Sequence Analysis, RNA, Sucrose (metabolism), Transcriptome (genetics).
- MESH :
- chemical , biosynthesis : Abscisic Acid, Phosphoprotein Phosphatases, Protein-Serine-Threonine Kinases.
- genetics : Citrus sinensis, Phosphoprotein Phosphatases, Plant Proteins, Protein-Serine-Threonine Kinases, Transcriptome.
- growth & development : Citrus sinensis.
- chemical , metabolism : Cyclopentanes, Oxylipins, Sucrose.
- Base Sequence, Gene Expression Profiling, Gene Expression Regulation, Plant, Sequence Analysis, RNA.
Abstract
A spontaneous late-ripening mutant of ‘Jincheng’ (
Url:
DOI: 10.1371/journal.pone.0116056
PubMed: 25551568
PubMed Central: 4281182
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PMC:4281182Le document en format XML
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<term>Base Sequence</term>
<term>Citrus sinensis (genetics)</term>
<term>Citrus sinensis (growth & development)</term>
<term>Cyclopentanes (metabolism)</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Oxylipins (metabolism)</term>
<term>Phosphoprotein Phosphatases (biosynthesis)</term>
<term>Phosphoprotein Phosphatases (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Protein-Serine-Threonine Kinases (biosynthesis)</term>
<term>Protein-Serine-Threonine Kinases (genetics)</term>
<term>Sequence Analysis, RNA</term>
<term>Sucrose (metabolism)</term>
<term>Transcriptome (genetics)</term>
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<keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Abscisic Acid</term>
<term>Phosphoprotein Phosphatases</term>
<term>Protein-Serine-Threonine Kinases</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term>
<term>Phosphoprotein Phosphatases</term>
<term>Plant Proteins</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Citrus sinensis</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cyclopentanes</term>
<term>Oxylipins</term>
<term>Sucrose</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term>
<term>Gene Expression Profiling</term>
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<front><div type="abstract" xml:lang="en"><p>A spontaneous late-ripening mutant of ‘Jincheng’ (<italic>C. sinensis</italic>
L. Osbeck) sweet orange exhibited a delay of fruit pigmentation and harvesting. In this work, we studied the processes of orange fruit ripening through the comparative analysis between the Jincheng mutant and its wild type. This study revealed that the fruit quality began to differ on 166<sup>th</sup>
days after anthesis. At this stage, fruits were subjected to transcriptome analysis by RNA sequencing. 13,412 differentially expressed unigenes (DEGs) were found. Of these unigenes, 75.8% were down-regulated in the wild type, suggesting that the transcription level of wild type was lower than that of the mutant during this stage. These DEGs were mainly clustered into five pathways: metabolic pathways, plant-pathogen interaction, spliceosome, biosynthesis of plant hormones and biosynthesis of phenylpropanoids. Therefore, the expression profiles of the genes that are involved in abscisic acid, sucrose, and jasmonic acid metabolism and signal transduction pathways were analyzed during the six fruit ripening stages. The results revealed the regulation mechanism of sweet orange fruit ripening metabolism in the following four aspects: First, the more mature orange fruits were, the lower the transcription levels were. Second, the expression level of <italic>PME</italic>
boosted with the maturity of the citrus fruit. Therefore, the expression level of <italic>PME</italic>
might represent the degree of the orange fruit ripeness. Third, the interaction of PP2C, PYR/PYL, and SnRK2 was peculiar to the orange fruit ripening process. Fourth, abscisic acid, sucrose, and jasmonic acid all took part in orange fruit ripening process and might interact with each other. These findings provide an insight into the intricate process of sweet orange fruit ripening.</p>
</div>
</front>
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</author>
<author><name sortKey="Zhu, Ad" uniqKey="Zhu A">AD Zhu</name>
</author>
<author><name sortKey="Tao, Ng" uniqKey="Tao N">NG Tao</name>
</author>
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<author><name sortKey="Xu, J" uniqKey="Xu J">J Xu</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hu, Z" uniqKey="Hu Z">Z Hu</name>
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</author>
<author><name sortKey="Wen, Q" uniqKey="Wen Q">Q Wen</name>
</author>
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</author>
<author><name sortKey="Ge, X" uniqKey="Ge X">X Ge</name>
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<biblStruct><analytic><author><name sortKey="Zhang, J Z" uniqKey="Zhang J">J-Z Zhang</name>
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<author><name sortKey="Li, Z M" uniqKey="Li Z">Z-M Li</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Distefano, G" uniqKey="Distefano G">G Distefano</name>
</author>
<author><name sortKey="Las Casas, G" uniqKey="Las Casas G">G Las Casas</name>
</author>
<author><name sortKey="Caruso, M" uniqKey="Caruso M">M Caruso</name>
</author>
<author><name sortKey="Todaro, A" uniqKey="Todaro A">A Todaro</name>
</author>
<author><name sortKey="Rapisarda, P" uniqKey="Rapisarda P">P Rapisarda</name>
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<biblStruct></biblStruct>
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</nlm:aff>
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</affiliation>
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</nlm:aff>
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</nlm:aff>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Kunming Academy of Agricultural Sciences, Kunming, 650000, China</addr-line>
</nlm:aff>
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<wicri:regionArea>Kunming Academy of Agricultural Sciences, Kunming, 650000</wicri:regionArea>
<wicri:noRegion>650000</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Hong" sort="Chen, Hong" uniqKey="Chen H" first="Hong" last="Chen">Hong Chen</name>
<affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
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<author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
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</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Yi, Hua Lin" sort="Yi, Hua Lin" uniqKey="Yi H" first="Hua-Lin" last="Yi">Hua-Lin Yi</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
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<idno type="doi">10.1371/journal.pone.0116056</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening</title>
<author><name sortKey="Zhang, Ya Jian" sort="Zhang, Ya Jian" uniqKey="Zhang Y" first="Ya-Jian" last="Zhang">Ya-Jian Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Xing Jian" sort="Wang, Xing Jian" uniqKey="Wang X" first="Xing-Jian" last="Wang">Xing-Jian Wang</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wu, Ju Xun" sort="Wu, Ju Xun" uniqKey="Wu J" first="Ju-Xun" last="Wu">Ju-Xun Wu</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Shan Yan" sort="Chen, Shan Yan" uniqKey="Chen S" first="Shan-Yan" last="Chen">Shan-Yan Chen</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Kunming Academy of Agricultural Sciences, Kunming, 650000, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Kunming Academy of Agricultural Sciences, Kunming, 650000</wicri:regionArea>
<wicri:noRegion>650000</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Hong" sort="Chen, Hong" uniqKey="Chen H" first="Hong" last="Chen">Hong Chen</name>
<affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yi, Hua Lin" sort="Yi, Hua Lin" uniqKey="Yi H" first="Hua-Lin" last="Yi">Hua-Lin Yi</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</addr-line>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2014">2014</date>
</imprint>
</series>
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<front><div type="abstract" xml:lang="en"><p>A spontaneous late-ripening mutant of ‘Jincheng’ (<italic>C. sinensis</italic>
L. Osbeck) sweet orange exhibited a delay of fruit pigmentation and harvesting. In this work, we studied the processes of orange fruit ripening through the comparative analysis between the Jincheng mutant and its wild type. This study revealed that the fruit quality began to differ on 166<sup>th</sup>
days after anthesis. At this stage, fruits were subjected to transcriptome analysis by RNA sequencing. 13,412 differentially expressed unigenes (DEGs) were found. Of these unigenes, 75.8% were down-regulated in the wild type, suggesting that the transcription level of wild type was lower than that of the mutant during this stage. These DEGs were mainly clustered into five pathways: metabolic pathways, plant-pathogen interaction, spliceosome, biosynthesis of plant hormones and biosynthesis of phenylpropanoids. Therefore, the expression profiles of the genes that are involved in abscisic acid, sucrose, and jasmonic acid metabolism and signal transduction pathways were analyzed during the six fruit ripening stages. The results revealed the regulation mechanism of sweet orange fruit ripening metabolism in the following four aspects: First, the more mature orange fruits were, the lower the transcription levels were. Second, the expression level of <italic>PME</italic>
boosted with the maturity of the citrus fruit. Therefore, the expression level of <italic>PME</italic>
might represent the degree of the orange fruit ripeness. Third, the interaction of PP2C, PYR/PYL, and SnRK2 was peculiar to the orange fruit ripening process. Fourth, abscisic acid, sucrose, and jasmonic acid all took part in orange fruit ripening process and might interact with each other. These findings provide an insight into the intricate process of sweet orange fruit ripening.</p>
</div>
</front>
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<pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comparative transcriptome analyses between a spontaneous late-ripening sweet orange mutant and its wild type suggest the functions of ABA, sucrose and JA during citrus fruit ripening.</title>
<author><name sortKey="Zhang, Ya Jian" sort="Zhang, Ya Jian" uniqKey="Zhang Y" first="Ya-Jian" last="Zhang">Ya-Jian Zhang</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Wu, Ju Xun" sort="Wu, Ju Xun" uniqKey="Wu J" first="Ju-Xun" last="Wu">Ju-Xun Wu</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Chen, Hong" sort="Chen, Hong" uniqKey="Chen H" first="Hong" last="Chen">Hong Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
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<author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yi, Hua Lin" sort="Yi, Hua Lin" uniqKey="Yi H" first="Hua-Lin" last="Yi">Hua-Lin Yi</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
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<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:25551568</idno>
<idno type="pmid">25551568</idno>
<idno type="doi">10.1371/journal.pone.0116056</idno>
<idno type="wicri:Area/PubMed/Corpus">000262</idno>
<idno type="wicri:Area/PubMed/Curation">000262</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000262</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Comparative transcriptome analyses between a spontaneous late-ripening sweet orange mutant and its wild type suggest the functions of ABA, sucrose and JA during citrus fruit ripening.</title>
<author><name sortKey="Zhang, Ya Jian" sort="Zhang, Ya Jian" uniqKey="Zhang Y" first="Ya-Jian" last="Zhang">Ya-Jian Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Xing Jian" sort="Wang, Xing Jian" uniqKey="Wang X" first="Xing-Jian" last="Wang">Xing-Jian Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wu, Ju Xun" sort="Wu, Ju Xun" uniqKey="Wu J" first="Ju-Xun" last="Wu">Ju-Xun Wu</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Shan Yan" sort="Chen, Shan Yan" uniqKey="Chen S" first="Shan-Yan" last="Chen">Shan-Yan Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China; Kunming Academy of Agricultural Sciences, Kunming, 650000, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China; Kunming Academy of Agricultural Sciences, Kunming, 650000</wicri:regionArea>
<wicri:noRegion>650000</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chen, Hong" sort="Chen, Hong" uniqKey="Chen H" first="Hong" last="Chen">Hong Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Engineering Technology College, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yi, Hua Lin" sort="Yi, Hua Lin" uniqKey="Yi H" first="Hua-Lin" last="Yi">Hua-Lin Yi</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea>
<wicri:noRegion>430070</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Abscisic Acid (biosynthesis)</term>
<term>Base Sequence</term>
<term>Citrus sinensis (genetics)</term>
<term>Citrus sinensis (growth & development)</term>
<term>Cyclopentanes (metabolism)</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Oxylipins (metabolism)</term>
<term>Phosphoprotein Phosphatases (biosynthesis)</term>
<term>Phosphoprotein Phosphatases (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Protein-Serine-Threonine Kinases (biosynthesis)</term>
<term>Protein-Serine-Threonine Kinases (genetics)</term>
<term>Sequence Analysis, RNA</term>
<term>Sucrose (metabolism)</term>
<term>Transcriptome (genetics)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Abscisic Acid</term>
<term>Phosphoprotein Phosphatases</term>
<term>Protein-Serine-Threonine Kinases</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term>
<term>Phosphoprotein Phosphatases</term>
<term>Plant Proteins</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Citrus sinensis</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cyclopentanes</term>
<term>Oxylipins</term>
<term>Sucrose</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Sequence Analysis, RNA</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">A spontaneous late-ripening mutant of 'Jincheng' (C. sinensis L. Osbeck) sweet orange exhibited a delay of fruit pigmentation and harvesting. In this work, we studied the processes of orange fruit ripening through the comparative analysis between the Jincheng mutant and its wild type. This study revealed that the fruit quality began to differ on 166th days after anthesis. At this stage, fruits were subjected to transcriptome analysis by RNA sequencing. 13,412 differentially expressed unigenes (DEGs) were found. Of these unigenes, 75.8% were down-regulated in the wild type, suggesting that the transcription level of wild type was lower than that of the mutant during this stage. These DEGs were mainly clustered into five pathways: metabolic pathways, plant-pathogen interaction, spliceosome, biosynthesis of plant hormones and biosynthesis of phenylpropanoids. Therefore, the expression profiles of the genes that are involved in abscisic acid, sucrose, and jasmonic acid metabolism and signal transduction pathways were analyzed during the six fruit ripening stages. The results revealed the regulation mechanism of sweet orange fruit ripening metabolism in the following four aspects: First, the more mature orange fruits were, the lower the transcription levels were. Second, the expression level of PME boosted with the maturity of the citrus fruit. Therefore, the expression level of PME might represent the degree of the orange fruit ripeness. Third, the interaction of PP2C, PYR/PYL, and SnRK2 was peculiar to the orange fruit ripening process. Fourth, abscisic acid, sucrose, and jasmonic acid all took part in orange fruit ripening process and might interact with each other. These findings provide an insight into the intricate process of sweet orange fruit ripening.</div>
</front>
</TEI>
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