Possible Involvement of Locus-Specific Methylation on Expression Regulation of LEAFY Homologous Gene (CiLFY) during Precocious Trifoliate Orange Phase Change Process
Identifieur interne : 000960 ( Main/Exploration ); précédent : 000959; suivant : 000961Possible Involvement of Locus-Specific Methylation on Expression Regulation of LEAFY Homologous Gene (CiLFY) during Precocious Trifoliate Orange Phase Change Process
Auteurs : Jin-Zhi Zhang ; Li Mei ; Rong Liu ; Muhammad Rehman Gul Khan ; Chun-Gen HuSource :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
DNA methylation plays an essential role in regulating plant development. Here, we described an early flowering trifoliate orange (precocious trifoliate orange,
Url:
DOI: 10.1371/journal.pone.0088558
PubMed: 24523915
PubMed Central: 3921215
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Possible Involvement of Locus-Specific Methylation on Expression Regulation of <italic>LEAFY</italic> Homologous Gene (<italic>CiLFY</italic>) during Precocious Trifoliate Orange Phase Change Process</title><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Mei, Li" sort="Mei, Li" uniqKey="Mei L" first="Li" last="Mei">Li Mei</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Liu, Rong" sort="Liu, Rong" uniqKey="Liu R" first="Rong" last="Liu">Rong Liu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Khan, Muhammad Rehman Gul" sort="Khan, Muhammad Rehman Gul" uniqKey="Khan M" first="Muhammad Rehman Gul" last="Khan">Muhammad Rehman Gul Khan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24523915</idno><idno type="pmc">3921215</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3921215</idno><idno type="RBID">PMC:3921215</idno><idno type="doi">10.1371/journal.pone.0088558</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">001191</idno><idno type="wicri:Area/Pmc/Curation">001190</idno><idno type="wicri:Area/Pmc/Checkpoint">000734</idno><idno type="wicri:Area/Ncbi/Merge">001597</idno><idno type="wicri:Area/Ncbi/Curation">001597</idno><idno type="wicri:Area/Ncbi/Checkpoint">001597</idno><idno type="wicri:Area/Main/Merge">000960</idno><idno type="wicri:Area/Main/Curation">000960</idno><idno type="wicri:Area/Main/Exploration">000960</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Possible Involvement of Locus-Specific Methylation on Expression Regulation of <italic>LEAFY</italic> Homologous Gene (<italic>CiLFY</italic>) during Precocious Trifoliate Orange Phase Change Process</title><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Mei, Li" sort="Mei, Li" uniqKey="Mei L" first="Li" last="Mei">Li Mei</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Liu, Rong" sort="Liu, Rong" uniqKey="Liu R" first="Rong" last="Liu">Rong Liu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Khan, Muhammad Rehman Gul" sort="Khan, Muhammad Rehman Gul" uniqKey="Khan M" first="Muhammad Rehman Gul" last="Khan">Muhammad Rehman Gul Khan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>DNA methylation plays an essential role in regulating plant development. Here, we described an early flowering trifoliate orange (precocious trifoliate orange, <italic>Poncirus trifoliata</italic> L. Raf) was treated with 5-azacytidine and displayed a number of phenotypic and developmental abnormalities. These observations suggested that DNA methylation might play an important role in regulating many developmental pathways including early flowering trait, and then the expression level of five key or integrated citrus flowering genes were analyzed. Our results showed that <italic>FLOWERING LOCUS T</italic> (<italic>CiFT</italic>) relative expression level was increased with the increasing concentrations of 5-AzaC. However, <italic>LEAFY</italic> (<italic>CiLFY</italic>), <italic>APETELA1</italic> (<italic>CiAP1</italic>), <italic>TERMINAL FLOWER1</italic> (<italic>CiTFL1</italic>), and <italic>FLOWERING LOCUS C</italic> (<italic>CiFLC</italic>) showed highest relative expression levels at 250 µΜ treatment, while decreased sharply at higher concentrations. In order to further confirm DNA methylation affects the expression of these genes, their full-length sequences were isolated by genome-walker method, and then was analyzed by using bioinformatics tools. However, only one locus-specific methylation site was observed in <italic>CiLFY</italic> sequence. Therefore, DNA methylation level of the <italic>CiLFY</italic> was investigated both at juvenile and adult stages of precocious trifoliate orange by bisulfate sequencing PCR; it has been shown that the level of DNA methylation was altered during phase change. In addition, spatial and temporal expression patterns of <italic>CiLFY</italic> promoter and a series of 5′ deletions were investigated by driving the expression of a β-glucuronidase reporter gene in <italic>Arabidopsis</italic>. Exogenous GA<sub>3</sub> treatment on transgenic <italic>Arabidopsis</italic> revealed that GA<sub>3</sub> might be involved in the developmental regulation of <italic>CiLFY</italic> during flowering process of precocious trifoliate orange. These results provided insights into the molecular regulation of <italic>CiLFY</italic> gene expression, which would be helpful for studying citrus flowering.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Li, C J" uniqKey="Li C">C-j Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mohandas, T" uniqKey="Mohandas T">T Mohandas</name></author><author><name sortKey="Sparkes, Rs" uniqKey="Sparkes R">RS Sparkes</name></author><author><name sortKey="Shapiro, Lj" uniqKey="Shapiro L">LJ Shapiro</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miura, A" uniqKey="Miura A">A Miura</name></author><author><name sortKey="Yonebayashi, S" uniqKey="Yonebayashi S">S Yonebayashi</name></author><author><name sortKey="Watanabe, K" uniqKey="Watanabe K">K Watanabe</name></author><author><name sortKey="Toyama, T" uniqKey="Toyama T">T Toyama</name></author><author><name 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