iTRAQ-Based Quantitative Proteomic Analysis of Cotton Roots and Leaves Reveals Pathways Associated with Salt Stress
Identifieur interne : 000005 ( Main/Exploration ); précédent : 000004; suivant : 000006iTRAQ-Based Quantitative Proteomic Analysis of Cotton Roots and Leaves Reveals Pathways Associated with Salt Stress
Auteurs : Tingting Chen ; Lei Zhang ; Haihong Shang ; Shaodong Liu ; Jun Peng ; Wankui Gong ; Yuzhen Shi ; Siping Zhang ; Junwen Li ; Juwu Gong ; Qun Ge ; Aiying Liu ; Huijuan Ma ; Xinhua Zhao ; Youlu YuanSource :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
Salinity is a major abiotic stress that affects plant growth and development. In this study, we performed a proteomic analysis of cotton roots and leaf tissue following exposure to saline stress. 611 and 1477 proteins were differentially expressed in the roots and leaves, respectively. In the roots, 259 (42%) proteins were up-regulated and 352 (58%) were down-regulated. In the leaves, 748 (51%) proteins were up-regulated and 729 (49%) were down-regulated. On the basis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, we concluded that the phenylalanine metabolism and starch and sucrose metabolism were active for energy homeostasis to cope with salt stress in cotton roots. Moreover, photosynthesis, pyruvate metabolism, glycolysis / gluconeogenesis, carbon fixation in photosynthetic organisms and phenylalanine metabolism were inhabited to reduce energy consumption. Characterization of the signaling pathways will help elucidate the mechanism activated by cotton in response to salt stress.
Url:
DOI: 10.1371/journal.pone.0148487
PubMed: 26841024
PubMed Central: 4739606
Affiliations:
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sort="Chen, Tingting" uniqKey="Chen T" first="Tingting" last="Chen">Tingting Chen</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Lei" sort="Zhang, Lei" uniqKey="Zhang L" first="Lei" last="Zhang">Lei Zhang</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Shang, Haihong" sort="Shang, Haihong" uniqKey="Shang H" first="Haihong" last="Shang">Haihong Shang</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Liu, Shaodong" sort="Liu, Shaodong" uniqKey="Liu S" first="Shaodong" last="Liu">Shaodong Liu</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Peng, Jun" sort="Peng, Jun" uniqKey="Peng J" first="Jun" last="Peng">Jun Peng</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Gong, Wankui" sort="Gong, Wankui" uniqKey="Gong W" first="Wankui" last="Gong">Wankui Gong</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Shi, Yuzhen" sort="Shi, Yuzhen" uniqKey="Shi Y" first="Yuzhen" last="Shi">Yuzhen Shi</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Siping" sort="Zhang, Siping" uniqKey="Zhang S" first="Siping" last="Zhang">Siping Zhang</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Li, Junwen" sort="Li, Junwen" uniqKey="Li J" first="Junwen" last="Li">Junwen Li</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Gong, Juwu" sort="Gong, Juwu" uniqKey="Gong J" first="Juwu" last="Gong">Juwu Gong</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Ge, Qun" sort="Ge, Qun" uniqKey="Ge Q" first="Qun" last="Ge">Qun Ge</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Liu, Aiying" sort="Liu, Aiying" uniqKey="Liu A" first="Aiying" last="Liu">Aiying Liu</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Ma, Huijuan" sort="Ma, Huijuan" uniqKey="Ma H" first="Huijuan" last="Ma">Huijuan Ma</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Zhao, Xinhua" sort="Zhao, Xinhua" uniqKey="Zhao X" first="Xinhua" last="Zhao">Xinhua Zhao</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Yuan, Youlu" sort="Yuan, Youlu" uniqKey="Yuan Y" first="Youlu" last="Yuan">Youlu Yuan</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Salinity is a major abiotic stress that affects plant growth and development. In this study, we performed a proteomic analysis of cotton roots and leaf tissue following exposure to saline stress. 611 and 1477 proteins were differentially expressed in the roots and leaves, respectively. In the roots, 259 (42%) proteins were up-regulated and 352 (58%) were down-regulated. In the leaves, 748 (51%) proteins were up-regulated and 729 (49%) were down-regulated. On the basis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, we concluded that the phenylalanine metabolism and starch and sucrose metabolism were active for energy homeostasis to cope with salt stress in cotton roots. Moreover, photosynthesis, pyruvate metabolism, glycolysis / gluconeogenesis, carbon fixation in photosynthetic organisms and phenylalanine metabolism were inhabited to reduce energy consumption. Characterization of the signaling pathways will help elucidate the mechanism activated by cotton in response to salt stress.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Munns, R" uniqKey="Munns R">R Munns</name></author><author><name sortKey="Tester, M" uniqKey="Tester M">M Tester</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tester, M" uniqKey="Tester M">M Tester</name></author><author><name sortKey="Davenport, R" uniqKey="Davenport R">R Davenport</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nohzadeh Malakshah, S" uniqKey="Nohzadeh Malakshah S">S Nohzadeh Malakshah</name></author><author><name sortKey="Habibi Rezaei, M" uniqKey="Habibi Rezaei M">M Habibi Rezaei</name></author><author><name sortKey="Heidari, M" uniqKey="Heidari M">M Heidari</name></author><author><name sortKey="Hosseini Salekdeh, G" uniqKey="Hosseini Salekdeh G">G Hosseini 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uniqKey="Liu A" first="Aiying" last="Liu">Aiying Liu</name><name sortKey="Liu, Shaodong" sort="Liu, Shaodong" uniqKey="Liu S" first="Shaodong" last="Liu">Shaodong Liu</name><name sortKey="Ma, Huijuan" sort="Ma, Huijuan" uniqKey="Ma H" first="Huijuan" last="Ma">Huijuan Ma</name><name sortKey="Peng, Jun" sort="Peng, Jun" uniqKey="Peng J" first="Jun" last="Peng">Jun Peng</name><name sortKey="Shang, Haihong" sort="Shang, Haihong" uniqKey="Shang H" first="Haihong" last="Shang">Haihong Shang</name><name sortKey="Shi, Yuzhen" sort="Shi, Yuzhen" uniqKey="Shi Y" first="Yuzhen" last="Shi">Yuzhen Shi</name><name sortKey="Yuan, Youlu" sort="Yuan, Youlu" uniqKey="Yuan Y" first="Youlu" last="Yuan">Youlu Yuan</name><name sortKey="Zhang, Lei" sort="Zhang, Lei" uniqKey="Zhang L" first="Lei" last="Zhang">Lei Zhang</name><name sortKey="Zhang, Siping" sort="Zhang, Siping" uniqKey="Zhang S" first="Siping" last="Zhang">Siping Zhang</name><name sortKey="Zhao, Xinhua" sort="Zhao, Xinhua" uniqKey="Zhao X" first="Xinhua" last="Zhao">Xinhua Zhao</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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