Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).
Identifieur interne : 000016 ( PubMed/Corpus ); précédent : 000015; suivant : 000017Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).
Auteurs : Jack A. Gilbert ; Gregory J. Dick ; Bethany Jenkins ; John Heidelberg ; Eric Allen ; Katherine R M. Mackey ; Edward F. DelongSource :
- Standards in genomic sciences [ 1944-3277 ] ; 2014.
Abstract
The National Science Foundation's EarthCube End User Workshop was held at USC Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterize the needs and tools available to the community that is focusing on microbial and physical oceanography research with a particular emphasis on 'omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analyzing the existing data, on the need for the construction and curation of diverse federated databases, as well as development of shared, interoperable, "big-data capable" analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyber infrastructure constraints, (ii) the current and future ocean 'omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the 'omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography.
DOI: 10.4056/sigs.5749944
PubMed: 25197495
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Dick</name><affiliation><nlm:affiliation>Department of Earth and Environmental Sciences and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Jenkins, Bethany" sort="Jenkins, Bethany" uniqKey="Jenkins B" first="Bethany" last="Jenkins">Bethany Jenkins</name><affiliation><nlm:affiliation>Depts of Cell and Molecular Biology and Oceanography, University of Rhode Island, RI 02881.</nlm:affiliation></affiliation></author><author><name sortKey="Heidelberg, John" sort="Heidelberg, John" uniqKey="Heidelberg J" first="John" last="Heidelberg">John Heidelberg</name><affiliation><nlm:affiliation>University of Southern California, College of Letters, Arts and Sciences, Los Angeles, CA.</nlm:affiliation></affiliation></author><author><name sortKey="Allen, Eric" sort="Allen, Eric" uniqKey="Allen E" first="Eric" last="Allen">Eric Allen</name><affiliation><nlm:affiliation>Scripps Institution of Oceanography and Division of Biological Sciences, University of California, San Diego, CA.</nlm:affiliation></affiliation></author><author><name sortKey="Mackey, Katherine R M" sort="Mackey, Katherine R M" uniqKey="Mackey K" first="Katherine R M" last="Mackey">Katherine R M. Mackey</name><affiliation><nlm:affiliation>Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry, Woods Hole, MA.</nlm:affiliation></affiliation></author><author><name sortKey="Delong, Edward F" sort="Delong, Edward F" uniqKey="Delong E" first="Edward F" last="Delong">Edward F. Delong</name><affiliation><nlm:affiliation>Center for Microbial Oceanography, Research and Education (C-MORE), University of Hawaii, Manoa, Honolulu, HI.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="doi">10.4056/sigs.5749944</idno><idno type="RBID">pubmed:25197495</idno><idno type="pmid">25197495</idno><idno type="wicri:Area/PubMed/Corpus">000016</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).</title><author><name sortKey="Gilbert, Jack A" sort="Gilbert, Jack A" uniqKey="Gilbert J" first="Jack A" last="Gilbert">Jack A. Gilbert</name><affiliation><nlm:affiliation>Argonne National Laboratory, Argonne, IL, USA & Department of Ecology and Evolution, University of Chicago, Chicago, IL.</nlm:affiliation></affiliation></author><author><name sortKey="Dick, Gregory J" sort="Dick, Gregory J" uniqKey="Dick G" first="Gregory J" last="Dick">Gregory J. Dick</name><affiliation><nlm:affiliation>Department of Earth and Environmental Sciences and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Jenkins, Bethany" sort="Jenkins, Bethany" uniqKey="Jenkins B" first="Bethany" last="Jenkins">Bethany Jenkins</name><affiliation><nlm:affiliation>Depts of Cell and Molecular Biology and Oceanography, University of Rhode Island, RI 02881.</nlm:affiliation></affiliation></author><author><name sortKey="Heidelberg, John" sort="Heidelberg, John" uniqKey="Heidelberg J" first="John" last="Heidelberg">John Heidelberg</name><affiliation><nlm:affiliation>University of Southern California, College of Letters, Arts and Sciences, Los Angeles, CA.</nlm:affiliation></affiliation></author><author><name sortKey="Allen, Eric" sort="Allen, Eric" uniqKey="Allen E" first="Eric" last="Allen">Eric Allen</name><affiliation><nlm:affiliation>Scripps Institution of Oceanography and Division of Biological Sciences, University of California, San Diego, CA.</nlm:affiliation></affiliation></author><author><name sortKey="Mackey, Katherine R M" sort="Mackey, Katherine R M" uniqKey="Mackey K" first="Katherine R M" last="Mackey">Katherine R M. Mackey</name><affiliation><nlm:affiliation>Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry, Woods Hole, MA.</nlm:affiliation></affiliation></author><author><name sortKey="Delong, Edward F" sort="Delong, Edward F" uniqKey="Delong E" first="Edward F" last="Delong">Edward F. Delong</name><affiliation><nlm:affiliation>Center for Microbial Oceanography, Research and Education (C-MORE), University of Hawaii, Manoa, Honolulu, HI.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Standards in genomic sciences</title><idno type="eISSN">1944-3277</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The National Science Foundation's EarthCube End User Workshop was held at USC Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterize the needs and tools available to the community that is focusing on microbial and physical oceanography research with a particular emphasis on 'omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analyzing the existing data, on the need for the construction and curation of diverse federated databases, as well as development of shared, interoperable, "big-data capable" analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyber infrastructure constraints, (ii) the current and future ocean 'omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the 'omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography.</div></front></TEI><pubmed><MedlineCitation Owner="NLM" Status="PubMed-not-MEDLINE"><PMID Version="1">25197495</PMID><DateCreated><Year>2014</Year><Month>09</Month><Day>08</Day></DateCreated><DateCompleted><Year>2014</Year><Month>09</Month><Day>08</Day></DateCompleted><DateRevised><Year>2014</Year><Month>09</Month><Day>11</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1944-3277</ISSN><JournalIssue CitedMedium="Print"><Volume>9</Volume><Issue>3</Issue><PubDate><Year>2014</Year><Month>Jun</Month><Day>15</Day></PubDate></JournalIssue><Title>Standards in genomic sciences</Title><ISOAbbreviation>Stand Genomic Sci</ISOAbbreviation></Journal><ArticleTitle>Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).</ArticleTitle><Pagination><MedlinePgn>1252-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.4056/sigs.5749944</ELocationID><Abstract><AbstractText>The National Science Foundation's EarthCube End User Workshop was held at USC Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterize the needs and tools available to the community that is focusing on microbial and physical oceanography research with a particular emphasis on 'omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analyzing the existing data, on the need for the construction and curation of diverse federated databases, as well as development of shared, interoperable, "big-data capable" analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyber infrastructure constraints, (ii) the current and future ocean 'omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the 'omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gilbert</LastName><ForeName>Jack A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Argonne National Laboratory, Argonne, IL, USA & Department of Ecology and Evolution, University of Chicago, Chicago, IL.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dick</LastName><ForeName>Gregory J</ForeName><Initials>GJ</Initials><AffiliationInfo><Affiliation>Department of Earth and Environmental Sciences and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jenkins</LastName><ForeName>Bethany</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Depts of Cell and Molecular Biology and Oceanography, University of Rhode Island, RI 02881.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heidelberg</LastName><ForeName>John</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>University of Southern California, College of Letters, Arts and Sciences, Los Angeles, CA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Allen</LastName><ForeName>Eric</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Scripps Institution of Oceanography and Division of Biological Sciences, University of California, San Diego, CA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mackey</LastName><ForeName>Katherine R M</ForeName><Initials>KR</Initials><AffiliationInfo><Affiliation>Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry, Woods Hole, MA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>DeLong</LastName><ForeName>Edward F</ForeName><Initials>EF</Initials><AffiliationInfo><Affiliation>Center for Microbial Oceanography, Research and Education (C-MORE), University of Hawaii, Manoa, Honolulu, HI.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>03</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Stand Genomic Sci</MedlineTA><NlmUniqueID>101530505</NlmUniqueID><ISSNLinking>1944-3277</ISSNLinking></MedlineJournalInfo><OtherID Source="NLM">PMC4149014</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="ecollection"><Year>2014</Year><Month>6</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="epublish"><Year>2014</Year><Month>3</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>9</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>9</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>9</Month><Day>10</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="doi">10.4056/sigs.5749944</ArticleId><ArticleId IdType="pii">sigs.5749944</ArticleId><ArticleId IdType="pubmed">25197495</ArticleId><ArticleId IdType="pmc">PMC4149014</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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