Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater
Identifieur interne : 000236 ( Pmc/Curation ); précédent : 000235; suivant : 000237Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater
Auteurs : Xin Yue Chan ; Ramitha Arumugam ; Siew Woh Choo ; Wai Fong Yin ; Kok Gan ChanSource :
- Genome Announcements [ 2169-8287 ] ; 2013.
Abstract
Tropical seawater harbors a rich diversity of microorganisms as a result of its nutrient-rich environment, constant supply of sufficient sunlight, and warm climate. In this report, we present the complexity of the microbial diversity of the surface seawater of the Georgetown coast as determined using next-generation sequencing technology.
Url:
DOI: 10.1128/genomeA.00540-13
PubMed: 23950114
PubMed Central: 3744670
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000236
Links to Exploration step
PMC:3744670Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater</title><author><name sortKey="Chan, Xin Yue" sort="Chan, Xin Yue" uniqKey="Chan X" first="Xin Yue" last="Chan">Xin Yue Chan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Arumugam, Ramitha" sort="Arumugam, Ramitha" uniqKey="Arumugam R" first="Ramitha" last="Arumugam">Ramitha Arumugam</name><affiliation><nlm:aff id="aff2"></nlm:aff></affiliation></author><author><name sortKey="Choo, Siew Woh" sort="Choo, Siew Woh" uniqKey="Choo S" first="Siew Woh" last="Choo">Siew Woh Choo</name><affiliation><nlm:aff id="aff2"></nlm:aff></affiliation></author><author><name sortKey="Yin, Wai Fong" sort="Yin, Wai Fong" uniqKey="Yin W" first="Wai Fong" last="Yin">Wai Fong Yin</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Chan, Kok Gan" sort="Chan, Kok Gan" uniqKey="Chan K" first="Kok Gan" last="Chan">Kok Gan Chan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23950114</idno><idno type="pmc">3744670</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3744670</idno><idno type="RBID">PMC:3744670</idno><idno type="doi">10.1128/genomeA.00540-13</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000236</idno><idno type="wicri:Area/Pmc/Curation">000236</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater</title><author><name sortKey="Chan, Xin Yue" sort="Chan, Xin Yue" uniqKey="Chan X" first="Xin Yue" last="Chan">Xin Yue Chan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Arumugam, Ramitha" sort="Arumugam, Ramitha" uniqKey="Arumugam R" first="Ramitha" last="Arumugam">Ramitha Arumugam</name><affiliation><nlm:aff id="aff2"></nlm:aff></affiliation></author><author><name sortKey="Choo, Siew Woh" sort="Choo, Siew Woh" uniqKey="Choo S" first="Siew Woh" last="Choo">Siew Woh Choo</name><affiliation><nlm:aff id="aff2"></nlm:aff></affiliation></author><author><name sortKey="Yin, Wai Fong" sort="Yin, Wai Fong" uniqKey="Yin W" first="Wai Fong" last="Yin">Wai Fong Yin</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Chan, Kok Gan" sort="Chan, Kok Gan" uniqKey="Chan K" first="Kok Gan" last="Chan">Kok Gan Chan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">Genome Announcements</title><idno type="eISSN">2169-8287</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Tropical seawater harbors a rich diversity of microorganisms as a result of its nutrient-rich environment, constant supply of sufficient sunlight, and warm climate. In this report, we present the complexity of the microbial diversity of the surface seawater of the Georgetown coast as determined using next-generation sequencing technology.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Whitman, Wb" uniqKey="Whitman W">WB Whitman</name></author><author><name sortKey="Coleman, Dc" uniqKey="Coleman D">DC Coleman</name></author><author><name sortKey="Wiebe, Wj" uniqKey="Wiebe W">WJ Wiebe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gutierrez, T" uniqKey="Gutierrez T">T Gutierrez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Azam, F" uniqKey="Azam F">F Azam</name></author><author><name sortKey="Fenchel, T" uniqKey="Fenchel T">T Fenchel</name></author><author><name sortKey="Field, J" uniqKey="Field J">J Field</name></author><author><name sortKey="Gray, J" uniqKey="Gray J">J Gray</name></author><author><name sortKey="Meyer Reil, L" uniqKey="Meyer Reil L">L Meyer-Reil</name></author><author><name sortKey="Thingstad, F" uniqKey="Thingstad F">F Thingstad</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, J" uniqKey="Zhou J">J Zhou</name></author><author><name sortKey="Bruns, Ma" uniqKey="Bruns M">MA Bruns</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Murray, Mg" uniqKey="Murray M">MG Murray</name></author><author><name sortKey="Thompson, Wf" uniqKey="Thompson W">WF Thompson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chan, Xy" uniqKey="Chan X">XY Chan</name></author><author><name sortKey="Chua, Kh" uniqKey="Chua K">KH Chua</name></author><author><name sortKey="Puthucheary, Sd" uniqKey="Puthucheary S">SD Puthucheary</name></author><author><name sortKey="Yin, W F" uniqKey="Yin W">W-F Yin</name></author><author><name sortKey="Chan, K G" uniqKey="Chan K">K-G Chan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Seshadri, R" uniqKey="Seshadri R">R Seshadri</name></author><author><name sortKey="Kravitz, Sa" uniqKey="Kravitz S">SA Kravitz</name></author><author><name sortKey="Smarr, L" uniqKey="Smarr L">L Smarr</name></author><author><name sortKey="Gilna, P" uniqKey="Gilna P">P Gilna</name></author><author><name sortKey="Frazier, M" uniqKey="Frazier M">M Frazier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huson, Dh" uniqKey="Huson D">DH Huson</name></author><author><name sortKey="Mitra, S" uniqKey="Mitra S">S Mitra</name></author><author><name sortKey="Ruscheweyh, Hj" uniqKey="Ruscheweyh H">HJ Ruscheweyh</name></author><author><name sortKey="Weber, N" uniqKey="Weber N">N Weber</name></author><author><name sortKey="Schuster, Sc" uniqKey="Schuster S">SC Schuster</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="brief-report"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id><journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id><journal-id journal-id-type="hwp">ga</journal-id><journal-id journal-id-type="pmc">ga</journal-id><journal-id journal-id-type="publisher-id">GA</journal-id><journal-title-group><journal-title>Genome Announcements</journal-title></journal-title-group><issn pub-type="epub">2169-8287</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23950114</article-id><article-id pub-id-type="pmc">3744670</article-id><article-id pub-id-type="publisher-id">genomeA00540-13</article-id><article-id pub-id-type="doi">10.1128/genomeA.00540-13</article-id><article-categories><subj-group subj-group-type="heading"><subject>Prokaryotes</subject></subj-group></article-categories><title-group><article-title>Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Chan</surname><given-names>Xin Yue</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author"><name><surname>Arumugam</surname><given-names>Ramitha</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Choo</surname><given-names>Siew Woh</given-names></name><xref ref-type="aff" rid="aff2"><sup>b</sup></xref></contrib><contrib contrib-type="author"><name><surname>Yin</surname><given-names>Wai Fong</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Chan</surname><given-names>Kok Gan</given-names></name><xref ref-type="aff" rid="aff1"><sup>a</sup></xref></contrib><aff id="aff1">Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia<label>a</label></aff><aff id="aff2">Research and Training Unit, Faculty of Dentistry, University of Malaya, Kuala Lumpur, Malaysia<label>b</label></aff></contrib-group><author-notes><corresp id="cor1">Address correspondence to Kok Gan Chan, <email>kokgan@um.edu.my</email>.</corresp></author-notes><pub-date pub-type="epub"><day>15</day><month>8</month><year>2013</year></pub-date><pub-date pub-type="collection"><season>Jul-Aug</season><year>2013</year></pub-date><volume>1</volume><issue>4</issue><elocation-id>e00540-13</elocation-id><history><date date-type="received"><day>18</day><month>6</month><year>2013</year></date><date date-type="accepted"><day>17</day><month>7</month><year>2013</year></date></history><permissions><copyright-statement>Copyright © 2013 Chan et al.</copyright-statement><copyright-year>2013</copyright-year><copyright-holder>Chan et al.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported license</ext-link>.</license-p></license></permissions><self-uri xlink:title="pdf" xlink:type="simple" xlink:href="jga00413541001.pdf"></self-uri><abstract><p>Tropical seawater harbors a rich diversity of microorganisms as a result of its nutrient-rich environment, constant supply of sufficient sunlight, and warm climate. In this report, we present the complexity of the microbial diversity of the surface seawater of the Georgetown coast as determined using next-generation sequencing technology.</p></abstract><counts><page-count count="1"></page-count></counts><custom-meta-group><custom-meta><meta-name>cover-date</meta-name><meta-value>July/August 2013</meta-value></custom-meta><custom-meta><meta-name>access-type</meta-name><meta-value>free</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Pmc/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000236 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd -nk 000236 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Ticri/CIDE
|area= CyberinfraV1
|flux= Pmc
|étape= Curation
|type= RBID
|clé= PMC:3744670
|texte= Metagenomic Sequencing of Prokaryotic Microbiota from Tropical Surface Seawater
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i -Sk "pubmed:23950114" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd \
| NlmPubMed2Wicri -a CyberinfraV1
| This area was generated with Dilib version V0.6.25. |  |