DBGC: A Database of Human Gastric Cancer
Identifieur interne : 000083 ( Pmc/Curation ); précédent : 000082; suivant : 000084DBGC: A Database of Human Gastric Cancer
Auteurs : Chao Wang [République populaire de Chine] ; Jun Zhang [République populaire de Chine] ; Mingdeng Cai [République populaire de Chine] ; Zhenggang Zhu [République populaire de Chine] ; Wenjie Gu [République populaire de Chine] ; Yingyan Yu [République populaire de Chine] ; Xiaoyan Zhang [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
The Database of Human Gastric Cancer (DBGC) is a comprehensive database that integrates various human gastric cancer-related data resources. Human gastric cancer-related transcriptomics projects, proteomics projects, mutations, biomarkers and drug-sensitive genes from different sources were collected and unified in this database. Moreover, epidemiological statistics of gastric cancer patients in China and clinicopathological information annotated with gastric cancer cases were also integrated into the DBGC. We believe that this database will greatly facilitate research regarding human gastric cancer in many fields. DBGC is freely available at
Url:
DOI: 10.1371/journal.pone.0142591
PubMed: 26566288
PubMed Central: 4643992
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China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Mingdeng" sort="Cai, Mingdeng" uniqKey="Cai M" first="Mingdeng" last="Cai">Mingdeng Cai</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Zhenggang" sort="Zhu, Zhenggang" uniqKey="Zhu Z" first="Zhenggang" last="Zhu">Zhenggang Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff 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wicri:level="1"><nlm:aff id="aff002"><addr-line>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xiaoyan" sort="Zhang, Xiaoyan" uniqKey="Zhang X" first="Xiaoyan" last="Zhang">Xiaoyan Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26566288</idno><idno type="pmc">4643992</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643992</idno><idno type="RBID">PMC:4643992</idno><idno type="doi">10.1371/journal.pone.0142591</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000083</idno><idno type="wicri:Area/Pmc/Curation">000083</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">DBGC: A Database of Human Gastric Cancer</title><author><name sortKey="Wang, Chao" sort="Wang, Chao" uniqKey="Wang C" first="Chao" last="Wang">Chao Wang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jun" sort="Zhang, Jun" uniqKey="Zhang J" first="Jun" last="Zhang">Jun Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Cai, Mingdeng" sort="Cai, Mingdeng" uniqKey="Cai M" first="Mingdeng" last="Cai">Mingdeng Cai</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country 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Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Gu, Wenjie" sort="Gu, Wenjie" uniqKey="Gu W" first="Wenjie" last="Gu">Wenjie Gu</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Yu, Yingyan" sort="Yu, Yingyan" uniqKey="Yu Y" first="Yingyan" last="Yu">Yingyan Yu</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Xiaoyan" sort="Zhang, Xiaoyan" uniqKey="Zhang X" first="Xiaoyan" last="Zhang">Xiaoyan Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Database of Human Gastric Cancer (DBGC) is a comprehensive database that integrates various human gastric cancer-related data resources. Human gastric cancer-related transcriptomics projects, proteomics projects, mutations, biomarkers and drug-sensitive genes from different sources were collected and unified in this database. Moreover, epidemiological statistics of gastric cancer patients in China and clinicopathological information annotated with gastric cancer cases were also integrated into the DBGC. We believe that this database will greatly facilitate research regarding human gastric cancer in many fields. DBGC is freely available at <ext-link ext-link-type="uri" xlink:href="http://bminfor.tongji.edu.cn/dbgc/index.do">http://bminfor.tongji.edu.cn/dbgc/index.do</ext-link></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Bray, F" uniqKey="Bray F">F Bray</name></author><author><name sortKey="Ren, Js" uniqKey="Ren J">JS Ren</name></author><author><name sortKey="Masuyer, E" uniqKey="Masuyer E">E Masuyer</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Penon, D" uniqKey="Penon D">D Penon</name></author><author><name sortKey="Cito, L" uniqKey="Cito L">L Cito</name></author><author><name sortKey="Giordano, A" uniqKey="Giordano A">A Giordano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sulahian, R" uniqKey="Sulahian R">R Sulahian</name></author><author><name sortKey="Casey, F" uniqKey="Casey F">F 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26566288</article-id><article-id pub-id-type="pmc">4643992</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0142591</article-id><article-id pub-id-type="publisher-id">PONE-D-15-07183</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title>DBGC: A Database of Human Gastric Cancer</article-title><alt-title alt-title-type="running-head">DBGC: A Database of Human Gastric Cancer</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Chao</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Jun</given-names></name><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Cai</surname><given-names>Mingdeng</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Zhu</surname><given-names>Zhenggang</given-names></name><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gu</surname><given-names>Wenjie</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Yu</surname><given-names>Yingyan</given-names></name><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref ref-type="aff" rid="aff003"><sup>3</sup></xref><xref rid="cor001" ref-type="corresp">*</xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Xiaoyan</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref rid="cor001" ref-type="corresp">*</xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>School of Life Science and Technology, Tongji University, 1239 Siping Road, Shanghai, China</addr-line></aff><aff id="aff002"><label>2</label><addr-line>Shanghai Ruijin Hospital, Shanghai Institute of Digestive Surgery and Shanghai Key Laboratory of Gastric Neoplasms, Affiliated to Shanghai Jiaotong University, School of Medicine, Shanghai, China</addr-line></aff><aff id="aff003"><label>3</label><addr-line>Collaborative Innovation Center of Systems Biomedicine, Shanghai Jiao Tong University, 200025, Shanghai, China</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Sreekumar</surname><given-names>Arun</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Baylor College of Medicine, UNITED STATES</addr-line></aff><author-notes><fn fn-type="conflict" id="coi001"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con" id="contrib001"><p>Conceived and designed the experiments: CW YY XZ. Performed the experiments: CW JZ. Analyzed the data: CW MC. Contributed reagents/materials/analysis tools: ZZ JZ WG. Wrote the paper: CW MC WG.</p></fn><corresp id="cor001">* E-mail: <email>ruijinhospitalyyy@163.com</email> (YY); <email>xyzhang@tongji.edu.cn</email> (XZ)</corresp></author-notes><pub-date pub-type="epub"><day>13</day><month>11</month><year>2015</year></pub-date><pub-date pub-type="collection"><year>2015</year></pub-date><volume>10</volume><issue>11</issue><elocation-id>e0142591</elocation-id><history><date date-type="received"><day>18</day><month>2</month><year>2015</year></date><date date-type="accepted"><day>24</day><month>10</month><year>2015</year></date></history><permissions><copyright-year>2015</copyright-year><copyright-holder>Wang et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited</license-p></license></permissions><self-uri content-type="pdf" xlink:type="simple" xlink:href="pone.0142591.pdf"></self-uri><abstract><p>The Database of Human Gastric Cancer (DBGC) is a comprehensive database that integrates various human gastric cancer-related data resources. Human gastric cancer-related transcriptomics projects, proteomics projects, mutations, biomarkers and drug-sensitive genes from different sources were collected and unified in this database. Moreover, epidemiological statistics of gastric cancer patients in China and clinicopathological information annotated with gastric cancer cases were also integrated into the DBGC. We believe that this database will greatly facilitate research regarding human gastric cancer in many fields. DBGC is freely available at <ext-link ext-link-type="uri" xlink:href="http://bminfor.tongji.edu.cn/dbgc/index.do">http://bminfor.tongji.edu.cn/dbgc/index.do</ext-link></p></abstract><funding-group><funding-statement>This work was partially supported by grants from the National Natural Science Foundation of China (81172329, 31571363, 81372644, 81372645 and 8157111077), Chinese National High Tech Program (2012AA02A504 and 2012AA02A203), International Cooperative Project from Shanghai Science and Technology Commission (12410706400), Innovation Foundation of Translational Medicine of Shanghai Jiao Tong University School of Medicine (15ZH1002 and 15ZH3001), Fong Shu Fook Tong Foundation and Gastrointestinal Carcinoma Biobank Project of Shanghai Jiao Tong University School of Medicine. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><fig-count count="4"></fig-count><table-count count="1"></table-count><page-count count="10"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>Data are availabe via Datadryad (<ext-link ext-link-type="uri" xlink:href="https://datadryad.org">https://datadryad.org</ext-link>). The unique accession number is: doi:<ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5061/dryad.271dk">10.5061/dryad.271dk</ext-link>.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>Data are availabe via Datadryad (<ext-link ext-link-type="uri" xlink:href="https://datadryad.org">https://datadryad.org</ext-link>). The unique accession number is: doi:<ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.5061/dryad.271dk">10.5061/dryad.271dk</ext-link>.</p></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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