The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences
Identifieur interne : 000038 ( Pmc/Curation ); précédent : 000037; suivant : 000039The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences
Auteurs : Nirav Merchant [États-Unis] ; Eric Lyons [États-Unis] ; Stephen Goff [États-Unis] ; Matthew Vaughn [États-Unis] ; Doreen Ware [États-Unis] ; David Micklos [États-Unis] ; Parker Antin [États-Unis]Source :
- PLoS Biology [ 1544-9173 ] ; 2016.
Abstract
The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.
Url:
DOI: 10.1371/journal.pbio.1002342
PubMed: 26752627
PubMed Central: 4709069
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sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea></affiliation></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea></affiliation></author><author><name sortKey="Goff, Stephen" sort="Goff, Stephen" uniqKey="Goff S" first="Stephen" last="Goff">Stephen Goff</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea></affiliation></author><author><name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas</wicri:regionArea></affiliation></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea></affiliation></author><author><name sortKey="Antin, Parker" sort="Antin, Parker" uniqKey="Antin P" first="Parker" last="Antin">Parker Antin</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS Biology</title><idno type="ISSN">1544-9173</idno><idno type="eISSN">1545-7885</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Goecks, J" uniqKey="Goecks J">J Goecks</name></author><author><name sortKey="Nekrutenko, A" uniqKey="Nekrutenko A">A Nekrutenko</name></author><author><name sortKey="Taylor, J" uniqKey="Taylor J">J Taylor</name></author><author><name sortKey="Galaxy, T" uniqKey="Galaxy T">T Galaxy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mclennan, M" uniqKey="Mclennan M">M McLennan</name></author><author><name sortKey="Kennell, R" uniqKey="Kennell R">R Kennell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deelman, E" uniqKey="Deelman E">E Deelman</name></author><author><name sortKey="Singh, G" uniqKey="Singh G">G Singh</name></author><author><name sortKey="Su, M H" uniqKey="Su M">M-H Su</name></author><author><name sortKey="Blythe, J" uniqKey="Blythe J">J Blythe</name></author><author><name sortKey="Gil, Y" uniqKey="Gil Y">Y Gil</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rajasekar, A" uniqKey="Rajasekar A">A Rajasekar</name></author><author><name sortKey="Moore, R" uniqKey="Moore R">R Moore</name></author><author><name sortKey="Hou, C" uniqKey="Hou C">C Hou</name></author><author><name sortKey="Lee, C" uniqKey="Lee C">C Lee</name></author><author><name sortKey="Marciano, R" uniqKey="Marciano R">R Marciano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Livney, M" uniqKey="Livney M">M Livney</name></author><author><name sortKey="Basney, J" uniqKey="Basney J">J Basney</name></author><author><name sortKey="Raman, R" uniqKey="Raman R">R Raman</name></author><author><name sortKey="Tannenbaum, T" uniqKey="Tannenbaum T">T Tannenbaum</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Merkel, D" uniqKey="Merkel D">D Merkel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schnase, Jl" uniqKey="Schnase J">JL Schnase</name></author><author><name sortKey="Duffy, Dq" uniqKey="Duffy D">DQ Duffy</name></author><author><name sortKey="Tamkin, Gs" uniqKey="Tamkin G">GS Tamkin</name></author><author><name sortKey="Nadeau, D" uniqKey="Nadeau D">D Nadeau</name></author><author><name sortKey="Thompson, Jh" uniqKey="Thompson J">JH Thompson</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="other"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS Biol</journal-id><journal-id journal-id-type="iso-abbrev">PLoS Biol</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosbiol</journal-id><journal-title-group><journal-title>PLoS Biology</journal-title></journal-title-group><issn pub-type="ppub">1544-9173</issn><issn pub-type="epub">1545-7885</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26752627</article-id><article-id pub-id-type="pmc">4709069</article-id><article-id pub-id-type="doi">10.1371/journal.pbio.1002342</article-id><article-id pub-id-type="publisher-id">PBIOLOGY-D-15-00740</article-id><article-categories><subj-group subj-group-type="heading"><subject>Community Page</subject></subj-group></article-categories><title-group><article-title>The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Merchant</surname><given-names>Nirav</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref rid="cor001" ref-type="corresp">*</xref></contrib><contrib contrib-type="author"><name><surname>Lyons</surname><given-names>Eric</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Goff</surname><given-names>Stephen</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Vaughn</surname><given-names>Matthew</given-names></name><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ware</surname><given-names>Doreen</given-names></name><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Micklos</surname><given-names>David</given-names></name><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Antin</surname><given-names>Parker</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line></aff><aff id="aff002"><label>2</label><addr-line>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas, United States of America</addr-line></aff><aff id="aff003"><label>3</label><addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line></aff><author-notes><fn fn-type="conflict" id="coi001"><p>The authors have declared that no competing interests exist.</p></fn><corresp id="cor001">* E-mail: <email>nirav@email.arizona.edu</email></corresp></author-notes><pub-date pub-type="epub"><day>11</day><month>1</month><year>2016</year></pub-date><pub-date pub-type="collection"><month>1</month><year>2016</year></pub-date><volume>14</volume><issue>1</issue><elocation-id>e1002342</elocation-id><permissions><copyright-statement>© 2016 Merchant et al</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Merchant et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited</license-p></license></permissions><self-uri content-type="pdf" xlink:type="simple" xlink:href="pbio.1002342.pdf"></self-uri><abstract><p>The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.</p></abstract><abstract abstract-type="toc"><p>This Community Page highlights the iPlant Collaborative, which provides scalable and extensible data management and computational resources for life science research, including learning materials and support to readily integrate these resources with existing workflows.</p></abstract><funding-group><funding-statement>The iPlant Collaborative is funded by the National Science Foundation under Award Numbers DBI - 0735191 and DBI - 1265383. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><fig-count count="3"></fig-count><table-count count="1"></table-count><page-count count="9"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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