Links to Exploration step
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Metatranscriptomic Analysis of Diminutive <named-content content-type="genus-species">Thiomargarita</named-content>
-Like Bacteria (“<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp.) from Abyssal Cold Seeps of the Barbados Accretionary Prism</title>
<author><name sortKey="Jones, Daniel S" sort="Jones, Daniel S" uniqKey="Jones D" first="Daniel S." last="Jones">Daniel S. Jones</name>
</author>
<author><name sortKey="Flood, Beverly E" sort="Flood, Beverly E" uniqKey="Flood B" first="Beverly E." last="Flood">Beverly E. Flood</name>
</author>
<author><name sortKey="Bailey, Jake V" sort="Bailey, Jake V" uniqKey="Bailey J" first="Jake V." last="Bailey">Jake V. Bailey</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">25724961</idno>
<idno type="pmc">4393456</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393456</idno>
<idno type="RBID">PMC:4393456</idno>
<idno type="doi">10.1128/AEM.00039-15</idno>
<date when="2015">2015</date>
<idno type="wicri:Area/Pmc/Corpus">000351</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Metatranscriptomic Analysis of Diminutive <named-content content-type="genus-species">Thiomargarita</named-content>
-Like Bacteria (“<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp.) from Abyssal Cold Seeps of the Barbados Accretionary Prism</title>
<author><name sortKey="Jones, Daniel S" sort="Jones, Daniel S" uniqKey="Jones D" first="Daniel S." last="Jones">Daniel S. Jones</name>
</author>
<author><name sortKey="Flood, Beverly E" sort="Flood, Beverly E" uniqKey="Flood B" first="Beverly E." last="Flood">Beverly E. Flood</name>
</author>
<author><name sortKey="Bailey, Jake V" sort="Bailey, Jake V" uniqKey="Bailey J" first="Jake V." last="Bailey">Jake V. Bailey</name>
</author>
</analytic>
<series><title level="j">Applied and Environmental Microbiology</title>
<idno type="ISSN">0099-2240</idno>
<idno type="eISSN">1098-5336</idno>
<imprint><date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Large sulfur-oxidizing bacteria in the family <named-content content-type="genus-species">Beggiatoaceae</named-content>
are important players in the global sulfur cycle. This group contains members of the well-known genera <named-content content-type="genus-species">Beggiatoa</named-content>
, <named-content content-type="genus-species">Thioploca</named-content>
, and <named-content content-type="genus-species">Thiomargarita</named-content>
but also recently identified and relatively unknown candidate taxa, including “<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp. and “<italic>Ca</italic>
. Thiophysa” spp. We discovered a population of “<italic>Ca</italic>
. Thiopilula” spp. colonizing cold seeps near Barbados at a ∼4.7-km water depth. The Barbados population consists of spherical cells that are morphologically similar to <named-content content-type="genus-species">Thiomargarita</named-content>
spp., with elemental sulfur inclusions and a central vacuole, but have much smaller cell diameters (5 to 40 μm). Metatranscriptomic analysis revealed that when exposed to anoxic sulfidic conditions, Barbados “<italic>Ca</italic>
. Thiopilula” organisms expressed genes for the oxidation of elemental sulfur and the reduction of nitrogenous compounds, consistent with their vacuolated morphology and intracellular sulfur storage capability. Metatranscriptomic analysis further revealed that anaerobic methane-oxidizing and sulfate-reducing organisms were active in the sediment, which likely provided reduced sulfur substrates for “<italic>Ca</italic>
. Thiopilula” and other sulfur-oxidizing microorganisms in the community. The novel observations of “<italic>Ca</italic>
. Thiopilula” and associated organisms reported here expand our knowledge of the globally distributed and ecologically successful <named-content content-type="genus-species">Beggiatoaceae</named-content>
group and thus offer insight into the composition and ecology of deep cold seep microbial communities.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Appl Environ Microbiol</journal-id>
<journal-id journal-id-type="iso-abbrev">Appl. Environ. Microbiol</journal-id>
<journal-id journal-id-type="hwp">aem</journal-id>
<journal-id journal-id-type="pmc">aem</journal-id>
<journal-id journal-id-type="publisher-id">AEM</journal-id>
<journal-title-group><journal-title>Applied and Environmental Microbiology</journal-title>
</journal-title-group>
<issn pub-type="ppub">0099-2240</issn>
<issn pub-type="epub">1098-5336</issn>
<publisher><publisher-name>American Society for Microbiology</publisher-name>
<publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">25724961</article-id>
<article-id pub-id-type="pmc">4393456</article-id>
<article-id pub-id-type="publisher-id">00039-15</article-id>
<article-id pub-id-type="doi">10.1128/AEM.00039-15</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Environmental Microbiology</subject>
</subj-group>
</article-categories>
<title-group><article-title>Metatranscriptomic Analysis of Diminutive <named-content content-type="genus-species">Thiomargarita</named-content>
-Like Bacteria (“<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp.) from Abyssal Cold Seeps of the Barbados Accretionary Prism</article-title>
<alt-title alt-title-type="running-head"><named-content content-type="genus-species">Thiomargarita</named-content>
-Like Bacteria from Abyssal Cold Seeps</alt-title>
<alt-title alt-title-type="short-authors">Jones et al.</alt-title>
</title-group>
<contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Jones</surname>
<given-names>Daniel S.</given-names>
</name>
</contrib>
<contrib contrib-type="author"><name><surname>Flood</surname>
<given-names>Beverly E.</given-names>
</name>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Bailey</surname>
<given-names>Jake V.</given-names>
</name>
</contrib>
<aff>Department of Earth Sciences, University of Minnesota, Minneapolis, Minnesota, USA</aff>
</contrib-group>
<contrib-group><contrib contrib-type="editor"><name><surname>Kostka</surname>
<given-names>J. E.</given-names>
</name>
<role>Editor</role>
</contrib>
</contrib-group>
<author-notes><corresp id="cor1">Address correspondence to Daniel S. Jones, <email>dsjones@umn.edu</email>
, or Jake V. Bailey, <email>baileyj@umn.edu</email>
.</corresp>
<fn fn-type="other"><p><bold>Citation</bold>
Jones DS, Flood BE, Bailey JV. 2015. Metatranscriptomic analysis of diminutive <named-content content-type="genus-species">Thiomargarita</named-content>
-like bacteria (“<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp.) from abyssal cold seeps of the Barbados accretionary prism. Appl Environ Microbiol 81:3142–3156. doi:<ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1128/AEM.00039-15">10.1128/AEM.00039-15</ext-link>
.</p>
</fn>
</author-notes>
<pub-date pub-type="epub"><day>27</day>
<month>2</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="ppub"><month>5</month>
<year>2015</year>
</pub-date>
<volume>81</volume>
<issue>9</issue>
<fpage>3142</fpage>
<lpage>3156</lpage>
<history><date date-type="received"><day>6</day>
<month>1</month>
<year>2015</year>
</date>
<date date-type="accepted"><day>23</day>
<month>2</month>
<year>2015</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2015, American Society for Microbiology. All Rights Reserved.</copyright-statement>
<copyright-year>2015</copyright-year>
<copyright-holder>American Society for Microbiology</copyright-holder>
</permissions>
<self-uri content-type="pdf" xlink:href="zam00915003142.pdf"></self-uri>
<abstract><p>Large sulfur-oxidizing bacteria in the family <named-content content-type="genus-species">Beggiatoaceae</named-content>
are important players in the global sulfur cycle. This group contains members of the well-known genera <named-content content-type="genus-species">Beggiatoa</named-content>
, <named-content content-type="genus-species">Thioploca</named-content>
, and <named-content content-type="genus-species">Thiomargarita</named-content>
but also recently identified and relatively unknown candidate taxa, including “<named-content content-type="genus-species">Candidatus</named-content>
Thiopilula” spp. and “<italic>Ca</italic>
. Thiophysa” spp. We discovered a population of “<italic>Ca</italic>
. Thiopilula” spp. colonizing cold seeps near Barbados at a ∼4.7-km water depth. The Barbados population consists of spherical cells that are morphologically similar to <named-content content-type="genus-species">Thiomargarita</named-content>
spp., with elemental sulfur inclusions and a central vacuole, but have much smaller cell diameters (5 to 40 μm). Metatranscriptomic analysis revealed that when exposed to anoxic sulfidic conditions, Barbados “<italic>Ca</italic>
. Thiopilula” organisms expressed genes for the oxidation of elemental sulfur and the reduction of nitrogenous compounds, consistent with their vacuolated morphology and intracellular sulfur storage capability. Metatranscriptomic analysis further revealed that anaerobic methane-oxidizing and sulfate-reducing organisms were active in the sediment, which likely provided reduced sulfur substrates for “<italic>Ca</italic>
. Thiopilula” and other sulfur-oxidizing microorganisms in the community. The novel observations of “<italic>Ca</italic>
. Thiopilula” and associated organisms reported here expand our knowledge of the globally distributed and ecologically successful <named-content content-type="genus-species">Beggiatoaceae</named-content>
group and thus offer insight into the composition and ecology of deep cold seep microbial communities.</p>
</abstract>
<counts><fig-count count="7"></fig-count>
<table-count count="2"></table-count>
<equation-count count="0"></equation-count>
<ref-count count="95"></ref-count>
<page-count count="15"></page-count>
<word-count count="11051"></word-count>
</counts>
</article-meta>
</front>
</pmc>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Pmc/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000351 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd -nk 000351 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= CyberinfraV1 |flux= Pmc |étape= Corpus |type= RBID |clé= |texte= }}
![]() | This area was generated with Dilib version V0.6.25. | ![]() |