The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
Identifieur interne : 000548 ( Pmc/Checkpoint ); précédent : 000547; suivant : 000549The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
Auteurs : Michael Y. Galperin [États-Unis] ; Guy R. Cochrane [Royaume-Uni]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2010.
Abstract
The current 18th Database Issue of
Url:
DOI: 10.1093/nar/gkq1243
PubMed: 21177655
PubMed Central: 3013748
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The 2011 <italic>Nucleic Acids Research</italic> Database Issue and the online Molecular Biology Database Collection</title><author><name sortKey="Galperin, Michael Y" sort="Galperin, Michael Y" uniqKey="Galperin M" first="Michael Y." last="Galperin">Michael Y. Galperin</name><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="AFF1">National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Cochrane, Guy R" sort="Cochrane, Guy R" uniqKey="Cochrane G" first="Guy R." last="Cochrane">Guy R. Cochrane</name><affiliation wicri:level="1"><nlm:aff id="AFF1">EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SD</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21177655</idno><idno type="pmc">3013748</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013748</idno><idno type="RBID">PMC:3013748</idno><idno type="doi">10.1093/nar/gkq1243</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000585</idno><idno type="wicri:Area/Pmc/Curation">000585</idno><idno type="wicri:Area/Pmc/Checkpoint">000548</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The 2011 <italic>Nucleic Acids Research</italic> Database Issue and the online Molecular Biology Database Collection</title><author><name sortKey="Galperin, Michael Y" sort="Galperin, Michael Y" uniqKey="Galperin M" first="Michael Y." last="Galperin">Michael Y. Galperin</name><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="AFF1">National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Cochrane, Guy R" sort="Cochrane, Guy R" uniqKey="Cochrane G" first="Guy R." last="Cochrane">Guy R. Cochrane</name><affiliation wicri:level="1"><nlm:aff id="AFF1">EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SD</wicri:noRegion></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The current 18th Database Issue of <italic>Nucleic Acids Research</italic> features descriptions of 96 new and 83 updated online databases covering various areas of molecular biology. It includes two editorials, one that discusses COMBREX, a new exciting project aimed at figuring out the functions of the ‘conserved hypothetical’ proteins, and one concerning BioDBcore, a proposed description of the ‘minimal information about a biological database’. Papers from the members of the International Nucleotide Sequence Database collaboration (INSDC) describe each of the participating databases, DDBJ, ENA and GenBank, principles of data exchange within the collaboration, and the recently established Sequence Read Archive. A testament to the longevity of databases, this issue includes updates on the RNA modification database, Definition of Secondary Structure of Proteins (DSSP) and Homology-derived Secondary Structure of Proteins (HSSP) databases, which have not been featured here in >12 years. There is also a block of papers describing recent progress in protein structure databases, such as Protein DataBank (PDB), PDB in Europe (PDBe), CATH, SUPERFAMILY and others, as well as databases on protein structure modeling, protein–protein interactions and the organization of inter-protein contact sites. Other highlights include updates of the popular gene expression databases, GEO and ArrayExpress, several cancer gene databases and a detailed description of the UK PubMed Central project. The <italic>Nucleic Acids Research</italic> online Database Collection, available at: <ext-link ext-link-type="uri" xlink:href="http://www.oxfordjournals.org/nar/database/a/">http://www.oxfordjournals.org/nar/database/a/</ext-link>, now lists 1330 carefully selected molecular biology databases. The full content of the Database Issue is freely available online at the <italic>Nucleic Acids Research</italic> web site (<ext-link ext-link-type="uri" xlink:href="http://nar.oxfordjournals.org/">http://nar.oxfordjournals.org/</ext-link>).</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Gaudet, P" uniqKey="Gaudet P">P. Gaudet</name></author><author><name sortKey="Bairoch, A" uniqKey="Bairoch A">A. Bairoch</name></author><author><name sortKey="Field, D" uniqKey="Field D">D. Field</name></author><author><name sortKey="Sansone, S A" uniqKey="Sansone S">S.-A. Sansone</name></author><author><name sortKey="Taylor, C" uniqKey="Taylor C">C. Taylor</name></author><author><name sortKey="Attwood, T K" uniqKey="Attwood T">T.K. Attwood</name></author><author><name sortKey="Bateman, A" uniqKey="Bateman A">A. Bateman</name></author><author><name sortKey="Blake, J A" uniqKey="Blake J">J.A. 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Chang</name></author><author><name sortKey="Huang, H D" uniqKey="Huang H">H.D. Huang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Nucleic Acids Res</journal-id><journal-id journal-id-type="publisher-id">nar</journal-id><journal-id journal-id-type="hwp">nar</journal-id><journal-title-group><journal-title>Nucleic Acids Research</journal-title></journal-title-group><issn pub-type="ppub">0305-1048</issn><issn pub-type="epub">1362-4962</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">21177655</article-id><article-id pub-id-type="pmc">3013748</article-id><article-id pub-id-type="doi">10.1093/nar/gkq1243</article-id><article-id pub-id-type="publisher-id">gkq1243</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>The 2011 <italic>Nucleic Acids Research</italic> Database Issue and the online Molecular Biology Database Collection</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Galperin</surname><given-names>Michael Y.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>1</sup></xref><xref ref-type="corresp" rid="COR1">*</xref></contrib><contrib contrib-type="author"><name><surname>Cochrane</surname><given-names>Guy R.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>2</sup></xref></contrib></contrib-group><aff id="AFF1"><sup>1</sup>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA and<sup>2</sup>EMBL—European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK</aff><author-notes><corresp id="COR1">*To whom correspondence should be addressed. Tel: <phone>+1 301 435 5910</phone>; Fax: <fax>+1 301 435 7793</fax>; Email: <email>galperin@ncbi.nlm.nih.gov</email></corresp></author-notes><pmc-comment>For NAR both ppub and collection dates generated for PMC processing 1/27/05 beck</pmc-comment>
<pub-date pub-type="collection"><month>1</month><year>2011</year></pub-date><pub-date pub-type="ppub"><month>1</month><year>2011</year></pub-date><pub-date pub-type="epub"><day>16</day><month>12</month><year>2010</year></pub-date><pub-date pub-type="pmc-release"><day>16</day><month>12</month><year>2010</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>39</volume><issue>Database issue</issue><issue-title>Database issue</issue-title><fpage>D1</fpage><lpage>D6</lpage><history><date date-type="received"><day>12</day><month>11</month><year>2010</year></date><date date-type="accepted"><day>15</day><month>11</month><year>2010</year></date></history><permissions><copyright-statement>Published by Oxford University Press 2010.</copyright-statement><copyright-year>2010</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by-nc/2.5"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/2.5">http://creativecommons.org/licenses/by-nc/2.5</ext-link>), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><abstract><p>The current 18th Database Issue of <italic>Nucleic Acids Research</italic> features descriptions of 96 new and 83 updated online databases covering various areas of molecular biology. It includes two editorials, one that discusses COMBREX, a new exciting project aimed at figuring out the functions of the ‘conserved hypothetical’ proteins, and one concerning BioDBcore, a proposed description of the ‘minimal information about a biological database’. Papers from the members of the International Nucleotide Sequence Database collaboration (INSDC) describe each of the participating databases, DDBJ, ENA and GenBank, principles of data exchange within the collaboration, and the recently established Sequence Read Archive. A testament to the longevity of databases, this issue includes updates on the RNA modification database, Definition of Secondary Structure of Proteins (DSSP) and Homology-derived Secondary Structure of Proteins (HSSP) databases, which have not been featured here in >12 years. There is also a block of papers describing recent progress in protein structure databases, such as Protein DataBank (PDB), PDB in Europe (PDBe), CATH, SUPERFAMILY and others, as well as databases on protein structure modeling, protein–protein interactions and the organization of inter-protein contact sites. Other highlights include updates of the popular gene expression databases, GEO and ArrayExpress, several cancer gene databases and a detailed description of the UK PubMed Central project. The <italic>Nucleic Acids Research</italic> online Database Collection, available at: <ext-link ext-link-type="uri" xlink:href="http://www.oxfordjournals.org/nar/database/a/">http://www.oxfordjournals.org/nar/database/a/</ext-link>, now lists 1330 carefully selected molecular biology databases. The full content of the Database Issue is freely available online at the <italic>Nucleic Acids Research</italic> web site (<ext-link ext-link-type="uri" xlink:href="http://nar.oxfordjournals.org/">http://nar.oxfordjournals.org/</ext-link>).</p></abstract></article-meta></front></pmc><affiliations><list><country><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Maryland</li></region></list><tree><country name="États-Unis"><region name="Maryland"><name sortKey="Galperin, Michael Y" sort="Galperin, Michael Y" uniqKey="Galperin M" first="Michael Y." last="Galperin">Michael Y. Galperin</name></region></country><country name="Royaume-Uni"><noRegion><name sortKey="Cochrane, Guy R" sort="Cochrane, Guy R" uniqKey="Cochrane G" first="Guy R." last="Cochrane">Guy R. Cochrane</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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