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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Identifieur interne : 000078 ( Ncbi/Merge ); précédent : 000077; suivant : 000079

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Auteurs : Joseph J. Gillespie [États-Unis] ; Nicole C. Ammerman [États-Unis] ; Sheila M. Dreher-Lesnick [États-Unis] ; M. Sayeedur Rahman [États-Unis] ; Micah J. Worley [États-Unis] ; Joao C. Setubal [États-Unis] ; Bruno S. Sobral [États-Unis] ; Abdu F. Azad [États-Unis]

Source :

RBID : PMC:2653234

Abstract

Background

Bacterial type IV secretion systems (T4SSs) comprise a diverse transporter family functioning in conjugation, competence, and effector molecule (DNA and/or protein) translocation. Thirteen genome sequences from Rickettsia, obligate intracellular symbionts/pathogens of a wide range of eukaryotes, have revealed a reduced T4SS relative to the Agrobacterium tumefaciens archetype (vir). However, the Rickettsia T4SS has not been functionally characterized for its role in symbiosis/virulence, and none of its substrates are known.

Results

Superimposition of T4SS structural/functional information over previously identified Rickettsia components implicate a functional Rickettsia T4SS. virB4, virB8 and virB9 are duplicated, yet only one copy of each has the conserved features of similar genes in other T4SSs. An extraordinarily duplicated VirB6 gene encodes five hydrophobic proteins conserved only in a short region known to be involved in DNA transfer in A. tumefaciens. virB1, virB2 and virB7 are newly identified, revealing a Rickettsia T4SS lacking only virB5 relative to the vir archetype. Phylogeny estimation suggests vertical inheritance of all components, despite gene rearrangements into an archipelago of five islets. Similarities of Rickettsia VirB7/VirB9 to ComB7/ComB9 proteins of ε-proteobacteria, as well as phylogenetic affinities to the Legionella lvh T4SS, imply the Rickettsiales ancestor acquired a vir-like locus from distantly related bacteria, perhaps while residing in a protozoan host. Modern modifications of these systems likely reflect diversification with various eukaryotic host cells.

Conclusion

We present the rvh (Rickettsiales vir homolog) T4SS, an evolutionary conserved transporter with an unknown role in rickettsial biology. This work lays the foundation for future laboratory characterization of this system, and also identifies the Legionella lvh T4SS as a suitable genetic model.


Url:
DOI: 10.1371/journal.pone.0004833
PubMed: 19279686
PubMed Central: 2653234

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PMC:2653234

Le document en format XML

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<sec>
<title>Background</title>
<p>Bacterial type IV secretion systems (T4SSs) comprise a diverse transporter family functioning in conjugation, competence, and effector molecule (DNA and/or protein) translocation. Thirteen genome sequences from
<italic>Rickettsia</italic>
, obligate intracellular symbionts/pathogens of a wide range of eukaryotes, have revealed a reduced T4SS relative to the
<italic>Agrobacterium tumefaciens</italic>
archetype (
<italic>vir</italic>
). However, the
<italic>Rickettsia</italic>
T4SS has not been functionally characterized for its role in symbiosis/virulence, and none of its substrates are known.</p>
</sec>
<sec>
<title>Results</title>
<p>Superimposition of T4SS structural/functional information over previously identified
<italic>Rickettsia</italic>
components implicate a functional
<italic>Rickettsia</italic>
T4SS.
<italic>virB4</italic>
,
<italic>virB8</italic>
and
<italic>virB9</italic>
are duplicated, yet only one copy of each has the conserved features of similar genes in other T4SSs. An extraordinarily duplicated VirB6 gene encodes five hydrophobic proteins conserved only in a short region known to be involved in DNA transfer in
<italic>A. tumefaciens</italic>
.
<italic>virB1</italic>
,
<italic>virB2</italic>
and
<italic>virB7</italic>
are newly identified, revealing a
<italic>Rickettsia</italic>
T4SS lacking only
<italic>virB5</italic>
relative to the
<italic>vir</italic>
archetype. Phylogeny estimation suggests vertical inheritance of all components, despite gene rearrangements into an archipelago of five islets. Similarities of
<italic>Rickettsia</italic>
VirB7/VirB9 to ComB7/ComB9 proteins of ε-proteobacteria, as well as phylogenetic affinities to the
<italic>Legionella lvh</italic>
T4SS, imply the Rickettsiales ancestor acquired a
<italic>vir</italic>
-like locus from distantly related bacteria, perhaps while residing in a protozoan host. Modern modifications of these systems likely reflect diversification with various eukaryotic host cells.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>We present the
<italic>rvh</italic>
(Rickettsiales
<italic>vir</italic>
homolog) T4SS, an evolutionary conserved transporter with an unknown role in rickettsial biology. This work lays the foundation for future laboratory characterization of this system, and also identifies the
<italic>Legionella lvh</italic>
T4SS as a suitable genetic model.</p>
</sec>
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<pmc article-type="research-article" xml:lang="EN">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id>
<journal-title>PLoS ONE</journal-title>
<issn pub-type="epub">1932-6203</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">19279686</article-id>
<article-id pub-id-type="pmc">2653234</article-id>
<article-id pub-id-type="publisher-id">09-PONE-RA-08211</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0004833</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Research Article</subject>
</subj-group>
<subj-group subj-group-type="Discipline">
<subject>Computational Biology</subject>
<subject>Evolutionary Biology</subject>
<subject>Microbiology</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>An Anomalous Type IV Secretion System in
<italic>Rickettsia</italic>
Is Evolutionarily Conserved</article-title>
<alt-title alt-title-type="running-head">
<italic>Rickettsia</italic>
Type IV Secretion</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Gillespie</surname>
<given-names>Joseph J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="cor1">
<sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ammerman</surname>
<given-names>Nicole C.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dreher-Lesnick</surname>
<given-names>Sheila M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rahman</surname>
<given-names>M. Sayeedur</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Worley</surname>
<given-names>Micah J.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Setubal</surname>
<given-names>Joao C.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sobral</surname>
<given-names>Bruno S.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Azad</surname>
<given-names>Abdu F.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<label>1</label>
<addr-line>Virginia Bioinformatics Institute at Virginia Tech, Blacksburg, Virginia, United States of America</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Department of Biology, University of Louisville, Louisville, Kentucky, United States of America</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Department of Computer Science, Virginia Tech, Blacksburg, Virginia, United States of America</addr-line>
</aff>
<contrib-group>
<contrib contrib-type="editor">
<name>
<surname>Bereswill</surname>
<given-names>Stefan</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1">Charité-Universitätsmedizin Berlin, Germany</aff>
<author-notes>
<corresp id="cor1">* E-mail:
<email>jgill@vbi.vt.edu</email>
</corresp>
<fn fn-type="con">
<p>Conceived and designed the experiments: JJG NA SDL MSR MW JCS BWSS AA. Performed the experiments: JJG NA SDL. Analyzed the data: JJG. Contributed reagents/materials/analysis tools: JJG JCS BWSS AA. Wrote the paper: JJG NA SDL MSR MW JCS BWSS AA.</p>
</fn>
</author-notes>
<pub-date pub-type="collection">
<year>2009</year>
</pub-date>
<pub-date pub-type="epub">
<day>12</day>
<month>3</month>
<year>2009</year>
</pub-date>
<volume>4</volume>
<issue>3</issue>
<elocation-id>e4833</elocation-id>
<history>
<date date-type="received">
<day>16</day>
<month>1</month>
<year>2009</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>1</month>
<year>2009</year>
</date>
</history>
<copyright-statement>Gillespie et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</copyright-statement>
<copyright-year>2009</copyright-year>
<abstract>
<sec>
<title>Background</title>
<p>Bacterial type IV secretion systems (T4SSs) comprise a diverse transporter family functioning in conjugation, competence, and effector molecule (DNA and/or protein) translocation. Thirteen genome sequences from
<italic>Rickettsia</italic>
, obligate intracellular symbionts/pathogens of a wide range of eukaryotes, have revealed a reduced T4SS relative to the
<italic>Agrobacterium tumefaciens</italic>
archetype (
<italic>vir</italic>
). However, the
<italic>Rickettsia</italic>
T4SS has not been functionally characterized for its role in symbiosis/virulence, and none of its substrates are known.</p>
</sec>
<sec>
<title>Results</title>
<p>Superimposition of T4SS structural/functional information over previously identified
<italic>Rickettsia</italic>
components implicate a functional
<italic>Rickettsia</italic>
T4SS.
<italic>virB4</italic>
,
<italic>virB8</italic>
and
<italic>virB9</italic>
are duplicated, yet only one copy of each has the conserved features of similar genes in other T4SSs. An extraordinarily duplicated VirB6 gene encodes five hydrophobic proteins conserved only in a short region known to be involved in DNA transfer in
<italic>A. tumefaciens</italic>
.
<italic>virB1</italic>
,
<italic>virB2</italic>
and
<italic>virB7</italic>
are newly identified, revealing a
<italic>Rickettsia</italic>
T4SS lacking only
<italic>virB5</italic>
relative to the
<italic>vir</italic>
archetype. Phylogeny estimation suggests vertical inheritance of all components, despite gene rearrangements into an archipelago of five islets. Similarities of
<italic>Rickettsia</italic>
VirB7/VirB9 to ComB7/ComB9 proteins of ε-proteobacteria, as well as phylogenetic affinities to the
<italic>Legionella lvh</italic>
T4SS, imply the Rickettsiales ancestor acquired a
<italic>vir</italic>
-like locus from distantly related bacteria, perhaps while residing in a protozoan host. Modern modifications of these systems likely reflect diversification with various eukaryotic host cells.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>We present the
<italic>rvh</italic>
(Rickettsiales
<italic>vir</italic>
homolog) T4SS, an evolutionary conserved transporter with an unknown role in rickettsial biology. This work lays the foundation for future laboratory characterization of this system, and also identifies the
<italic>Legionella lvh</italic>
T4SS as a suitable genetic model.</p>
</sec>
</abstract>
<counts>
<page-count count="24"></page-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>Kentucky</li>
<li>Maryland</li>
<li>Virginie</li>
</region>
</list>
<tree>
<country name="États-Unis">
<region name="Virginie">
<name sortKey="Gillespie, Joseph J" sort="Gillespie, Joseph J" uniqKey="Gillespie J" first="Joseph J." last="Gillespie">Joseph J. Gillespie</name>
</region>
<name sortKey="Ammerman, Nicole C" sort="Ammerman, Nicole C" uniqKey="Ammerman N" first="Nicole C." last="Ammerman">Nicole C. Ammerman</name>
<name sortKey="Azad, Abdu F" sort="Azad, Abdu F" uniqKey="Azad A" first="Abdu F." last="Azad">Abdu F. Azad</name>
<name sortKey="Dreher Lesnick, Sheila M" sort="Dreher Lesnick, Sheila M" uniqKey="Dreher Lesnick S" first="Sheila M." last="Dreher-Lesnick">Sheila M. Dreher-Lesnick</name>
<name sortKey="Gillespie, Joseph J" sort="Gillespie, Joseph J" uniqKey="Gillespie J" first="Joseph J." last="Gillespie">Joseph J. Gillespie</name>
<name sortKey="Rahman, M Sayeedur" sort="Rahman, M Sayeedur" uniqKey="Rahman M" first="M. Sayeedur" last="Rahman">M. Sayeedur Rahman</name>
<name sortKey="Setubal, Joao C" sort="Setubal, Joao C" uniqKey="Setubal J" first="Joao C." last="Setubal">Joao C. Setubal</name>
<name sortKey="Setubal, Joao C" sort="Setubal, Joao C" uniqKey="Setubal J" first="Joao C." last="Setubal">Joao C. Setubal</name>
<name sortKey="Sobral, Bruno S" sort="Sobral, Bruno S" uniqKey="Sobral B" first="Bruno S." last="Sobral">Bruno S. Sobral</name>
<name sortKey="Worley, Micah J" sort="Worley, Micah J" uniqKey="Worley M" first="Micah J." last="Worley">Micah J. Worley</name>
</country>
</tree>
</affiliations>
</record>

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