Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes1[OPEN]
Identifieur interne : 000580 ( Ncbi/Curation ); précédent : 000579; suivant : 000581Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes1[OPEN]
Auteurs : Meiyee Law ; Kevin L. Childs ; Michael S. Campbell ; Joshua C. Stein ; Andrew J. Olson ; Carson Holt ; Nicholas Panchy ; Jikai Lei ; Dian Jiao ; Carson M. Andorf ; Carolyn J. Lawrence ; Doreen Ware ; Shin-Han Shiu ; Yanni Sun ; Ning Jiang ; Mark YandellSource :
- Plant Physiology [ 0032-0889 ] ; 2014.
English descriptors
- KwdEn :
- Databases, Genetic (standards), Exons (genetics), Genes, Plant (genetics), Genome, Plant (genetics), Introns (genetics), Models, Genetic, Molecular Sequence Annotation (methods), Molecular Sequence Annotation (standards), Pseudogenes (genetics), Quality Control, RNA, Untranslated (genetics), Zea mays (genetics).
- MESH :
- chemical , genetics : RNA, Untranslated.
- genetics : Exons, Genes, Plant, Genome, Plant, Introns, Pseudogenes, Zea mays.
- methods : Molecular Sequence Annotation.
- standards : Databases, Genetic, Molecular Sequence Annotation.
- Models, Genetic, Quality Control.
Abstract
Url:
DOI: 10.1104/pp.114.245027
PubMed: 25384563
PubMed Central: 4280997
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PMC:4280997Le document en format XML
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Stein</name></author><author><name sortKey="Olson, Andrew J" sort="Olson, Andrew J" uniqKey="Olson A" first="Andrew J." last="Olson">Andrew J. Olson</name></author><author><name sortKey="Holt, Carson" sort="Holt, Carson" uniqKey="Holt C" first="Carson" last="Holt">Carson Holt</name></author><author><name sortKey="Panchy, Nicholas" sort="Panchy, Nicholas" uniqKey="Panchy N" first="Nicholas" last="Panchy">Nicholas Panchy</name></author><author><name sortKey="Lei, Jikai" sort="Lei, Jikai" uniqKey="Lei J" first="Jikai" last="Lei">Jikai Lei</name></author><author><name sortKey="Jiao, Dian" sort="Jiao, Dian" uniqKey="Jiao D" first="Dian" last="Jiao">Dian Jiao</name></author><author><name sortKey="Andorf, Carson M" sort="Andorf, Carson M" uniqKey="Andorf C" first="Carson M." last="Andorf">Carson M. Andorf</name></author><author><name sortKey="Lawrence, Carolyn J" sort="Lawrence, Carolyn J" uniqKey="Lawrence C" first="Carolyn J." last="Lawrence">Carolyn J. Lawrence</name></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name></author><author><name sortKey="Shiu, Shin Han" sort="Shiu, Shin Han" uniqKey="Shiu S" first="Shin-Han" last="Shiu">Shin-Han Shiu</name></author><author><name sortKey="Sun, Yanni" sort="Sun, Yanni" uniqKey="Sun Y" first="Yanni" last="Sun">Yanni Sun</name></author><author><name sortKey="Jiang, Ning" sort="Jiang, Ning" uniqKey="Jiang N" first="Ning" last="Jiang">Ning Jiang</name></author><author><name sortKey="Yandell, Mark" sort="Yandell, Mark" uniqKey="Yandell M" first="Mark" last="Yandell">Mark Yandell</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25384563</idno><idno type="pmc">4280997</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280997</idno><idno type="RBID">PMC:4280997</idno><idno type="doi">10.1104/pp.114.245027</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000386</idno><idno type="wicri:Area/Pmc/Curation">000386</idno><idno type="wicri:Area/Pmc/Checkpoint">000233</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000012</idno><idno type="wicri:Area/PubMed/Curation">000012</idno><idno type="wicri:Area/PubMed/Checkpoint">000012</idno><idno type="wicri:Area/Ncbi/Merge">000580</idno><idno type="wicri:Area/Ncbi/Curation">000580</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes<xref ref-type="fn" rid="fn1"><sup>1</sup></xref><xref ref-type="fn" rid="fn3"><sup>[OPEN]</sup></xref></title><author><name sortKey="Law, Meiyee" sort="Law, Meiyee" uniqKey="Law M" first="Meiyee" last="Law">Meiyee Law</name></author><author><name sortKey="Childs, Kevin L" sort="Childs, Kevin L" uniqKey="Childs K" first="Kevin L." last="Childs">Kevin L. Childs</name></author><author><name sortKey="Campbell, Michael S" sort="Campbell, Michael S" uniqKey="Campbell M" first="Michael S." last="Campbell">Michael S. Campbell</name></author><author><name sortKey="Stein, Joshua C" sort="Stein, Joshua C" uniqKey="Stein J" first="Joshua C." last="Stein">Joshua C. Stein</name></author><author><name sortKey="Olson, Andrew J" sort="Olson, Andrew J" uniqKey="Olson A" first="Andrew J." last="Olson">Andrew J. Olson</name></author><author><name sortKey="Holt, Carson" sort="Holt, Carson" uniqKey="Holt C" first="Carson" last="Holt">Carson Holt</name></author><author><name sortKey="Panchy, Nicholas" sort="Panchy, Nicholas" uniqKey="Panchy N" first="Nicholas" last="Panchy">Nicholas Panchy</name></author><author><name sortKey="Lei, Jikai" sort="Lei, Jikai" uniqKey="Lei J" first="Jikai" last="Lei">Jikai Lei</name></author><author><name sortKey="Jiao, Dian" sort="Jiao, Dian" uniqKey="Jiao D" first="Dian" last="Jiao">Dian Jiao</name></author><author><name sortKey="Andorf, Carson M" sort="Andorf, Carson M" uniqKey="Andorf C" first="Carson M." last="Andorf">Carson M. Andorf</name></author><author><name sortKey="Lawrence, Carolyn J" sort="Lawrence, Carolyn J" uniqKey="Lawrence C" first="Carolyn J." last="Lawrence">Carolyn J. Lawrence</name></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name></author><author><name sortKey="Shiu, Shin Han" sort="Shiu, Shin Han" uniqKey="Shiu S" first="Shin-Han" last="Shiu">Shin-Han Shiu</name></author><author><name sortKey="Sun, Yanni" sort="Sun, Yanni" uniqKey="Sun Y" first="Yanni" last="Sun">Yanni Sun</name></author><author><name sortKey="Jiang, Ning" sort="Jiang, Ning" uniqKey="Jiang N" first="Ning" last="Jiang">Ning Jiang</name></author><author><name sortKey="Yandell, Mark" sort="Yandell, Mark" uniqKey="Yandell M" first="Mark" last="Yandell">Mark Yandell</name></author></analytic><series><title level="j">Plant Physiology</title><idno type="ISSN">0032-0889</idno><idno type="eISSN">1532-2548</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Genetic (standards)</term><term>Exons (genetics)</term><term>Genes, Plant (genetics)</term><term>Genome, Plant (genetics)</term><term>Introns (genetics)</term><term>Models, Genetic</term><term>Molecular Sequence Annotation (methods)</term><term>Molecular Sequence Annotation (standards)</term><term>Pseudogenes (genetics)</term><term>Quality Control</term><term>RNA, Untranslated (genetics)</term><term>Zea mays (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Untranslated</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Exons</term><term>Genes, Plant</term><term>Genome, Plant</term><term>Introns</term><term>Pseudogenes</term><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Molecular Sequence Annotation</term></keywords><keywords scheme="MESH" qualifier="standards" xml:lang="en"><term>Databases, Genetic</term><term>Molecular Sequence Annotation</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Models, Genetic</term><term>Quality Control</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Reannotation of the maize genome using MAKER-P results in many revised and new gene models</italic>.</p></div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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