Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
Identifieur interne : 000444 ( Ncbi/Curation ); précédent : 000443; suivant : 000445Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
Auteurs : Lesley A. Ogilvie [Royaume-Uni] ; Lucas D. Bowler [Royaume-Uni] ; Jonathan Caplin [Royaume-Uni] ; Cinzia Dedi [Royaume-Uni] ; David Diston [Royaume-Uni, Suisse] ; Elizabeth Cheek [Royaume-Uni] ; Huw Taylor [Royaume-Uni] ; James E. Ebdon [Royaume-Uni] ; Brian V. Jones [Royaume-Uni]Source :
- Nature Communications [ 2041-1723 ] ; 2013.
Abstract
Bacterial viruses (bacteriophages) have a key role in shaping the development and functional outputs of host microbiomes. Although metagenomic approaches have greatly expanded our understanding of the prokaryotic virosphere, additional tools are required for the phage-oriented dissection of metagenomic data sets, and host-range affiliation of recovered sequences. Here we demonstrate the application of a genome signature-based approach to interrogate conventional whole-community metagenomes and access subliminal, phylogenetically targeted, phage sequences present within. We describe a portion of the biological dark matter extant in the human gut virome, and bring to light a population of potentially gut-specific
Url:
DOI: 10.1038/ncomms3420
PubMed: 24036533
PubMed Central: 3778543
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Bowler</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre for Biomedical and Health Science Research, School of Pharmacy and Biomolecular Sciences, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Caplin, Jonathan" sort="Caplin, Jonathan" uniqKey="Caplin J" first="Jonathan" last="Caplin">Jonathan Caplin</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Environment and Technology, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Dedi, Cinzia" sort="Dedi, Cinzia" uniqKey="Dedi C" first="Cinzia" last="Dedi">Cinzia Dedi</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre for Biomedical and Health Science Research, School of Pharmacy and Biomolecular Sciences, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Diston, David" sort="Diston, David" uniqKey="Diston D" first="David" last="Diston">David Diston</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Environment and Technology, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a4">Present address: Mikrobiologische and Biotechnologische Risiken Bundesamt für Gesundheit BAG, 3003 Bern, Switzerland</nlm:aff><country xml:lang="fr">Suisse</country><wicri:regionArea>Present address: Mikrobiologische and Biotechnologische Risiken Bundesamt für Gesundheit BAG, 3003 Bern</wicri:regionArea><placeName><settlement type="city">Berne</settlement><region type="région" nuts="3">Canton de Berne</region></placeName></affiliation></author><author><name sortKey="Cheek, Elizabeth" sort="Cheek, Elizabeth" uniqKey="Cheek E" first="Elizabeth" last="Cheek">Elizabeth Cheek</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>School of Computing, Engineering and Mathematics, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Taylor, Huw" sort="Taylor, Huw" uniqKey="Taylor H" first="Huw" last="Taylor">Huw Taylor</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Environment and Technology, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ebdon, James E" sort="Ebdon, James E" uniqKey="Ebdon J" first="James E." last="Ebdon">James E. Ebdon</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Environment and Technology, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Jones, Brian V" sort="Jones, Brian V" uniqKey="Jones B" first="Brian V." last="Jones">Brian V. Jones</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre for Biomedical and Health Science Research, School of Pharmacy and Biomolecular Sciences, University of Brighton</institution>, Brighton BN2 4GJ,<country>UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Nature Communications</title><idno type="eISSN">2041-1723</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Bacterial viruses (bacteriophages) have a key role in shaping the development and functional outputs of host microbiomes. Although metagenomic approaches have greatly expanded our understanding of the prokaryotic virosphere, additional tools are required for the phage-oriented dissection of metagenomic data sets, and host-range affiliation of recovered sequences. Here we demonstrate the application of a genome signature-based approach to interrogate conventional whole-community metagenomes and access subliminal, phylogenetically targeted, phage sequences present within. We describe a portion of the biological dark matter extant in the human gut virome, and bring to light a population of potentially gut-specific <italic>Bacteroidales</italic>-like phage, poorly represented in existing virus like particle-derived viral metagenomes. These predominantly temperate phage were shown to encode functions of direct relevance to human health in the form of antibiotic resistance genes, and provided evidence for the existence of putative ‘viral-enterotypes’ among this fraction of the human gut virome.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Suttle, C A" uniqKey="Suttle C">C. A. Suttle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wommack, K E" uniqKey="Wommack K">K. E. Wommack</name></author><author><name sortKey="Colwell, R R" uniqKey="Colwell R">R. R. Colwell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reyes, A" uniqKey="Reyes A">A. Reyes</name></author><author><name sortKey="Semenkovich, N P" uniqKey="Semenkovich N">N. P. Semenkovich</name></author><author><name sortKey="Whiteson, K" uniqKey="Whiteson K">K. Whiteson</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F. Rohwer</name></author><author><name sortKey="Gordon, J I" uniqKey="Gordon J">J. I. Gordon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fuhrman, J A" uniqKey="Fuhrman J">J. A. Fuhrman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brussow, H" uniqKey="Brussow H">H. Brüssow</name></author><author><name sortKey="Canchaya, C" uniqKey="Canchaya C">C. Canchaya</name></author><author><name sortKey="Hardt, W D" uniqKey="Hardt W">W.-D. Hardt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M. Breitbart</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Minot, S" uniqKey="Minot S">S. Minot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stern, A" uniqKey="Stern A">A. Stern</name></author><author><name sortKey="Mick, E" uniqKey="Mick E">E. Mick</name></author><author><name sortKey="Tirosh, I" uniqKey="Tirosh I">I. Tirosh</name></author><author><name sortKey="Sagy, O" uniqKey="Sagy O">O. Sagy</name></author><author><name sortKey="Sorek, R" uniqKey="Sorek R">R. Sorek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Williamson, S J" uniqKey="Williamson S">S. J. Williamson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Angly, F E" uniqKey="Angly F">F. E. Angly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reyes, A" uniqKey="Reyes A">A. Reyes</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Caporaso, J G" uniqKey="Caporaso J">J. G. Caporaso</name></author><author><name sortKey="Knight, R" uniqKey="Knight R">R. Knight</name></author><author><name sortKey="Kelley, S T" uniqKey="Kelley S">S. T. Kelley</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ogilvie, L A" uniqKey="Ogilvie L">L. A. Ogilvie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lepage, P" uniqKey="Lepage P">P. Lepage</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, B V" uniqKey="Jones B">B. V. Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gorski, A" uniqKey="Gorski A">A. Gorski</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Colomer Lluch, M" uniqKey="Colomer Lluch M">M. Colomer-Lluch</name></author><author><name sortKey="Jofre, J" uniqKey="Jofre J">J. Jofre</name></author><author><name sortKey="Muniesa, M" uniqKey="Muniesa M">M. Muniesa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Waldor, M K" uniqKey="Waldor M">M. K. Waldor</name></author><author><name sortKey="Mekalanos, J J" uniqKey="Mekalanos J">J. J. Mekalanos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F. Rohwer</name></author><author><name sortKey="Prangishvili, D" uniqKey="Prangishvili D">D. Prangishvili</name></author><author><name sortKey="Lindell, D" uniqKey="Lindell D">D. Lindell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thurber, R V" uniqKey="Thurber R">R. V. Thurber</name></author><author><name sortKey="Haynes, M" uniqKey="Haynes M">M. Haynes</name></author><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M. Breitbart</name></author><author><name sortKey="Wegley, L" uniqKey="Wegley L">L. Wegley</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F. Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qin, J" uniqKey="Qin J">J. Qin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pride, D T" uniqKey="Pride D">D. T. Pride</name></author><author><name sortKey="Meinersmann, R J" uniqKey="Meinersmann R">R. J. Meinersmann</name></author><author><name sortKey="Wassenaar, T M" uniqKey="Wassenaar T">T. M. Wassenaar</name></author><author><name sortKey="Blaser, M J" uniqKey="Blaser M">M. J. Blaser</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pride, D T" uniqKey="Pride D">D. T. Pride</name></author><author><name sortKey="Wassenaar, T M" uniqKey="Wassenaar T">T. M. Wassenaar</name></author><author><name sortKey="Ghose, C" uniqKey="Ghose C">C. Ghose</name></author><author><name sortKey="Blaser, M J" uniqKey="Blaser M">M. J. Blaser</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deschavanne, P" uniqKey="Deschavanne P">P. Deschavanne</name></author><author><name sortKey="Dubow, M S" uniqKey="Dubow M">M. S. DuBow</name></author><author><name sortKey="Regeard, C" uniqKey="Regeard C">C. Regeard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marchler Bauer, A" uniqKey="Marchler Bauer A">A. Marchler-Bauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tatusov, R L" uniqKey="Tatusov R">R. L. Tatusov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leplae, R" uniqKey="Leplae R">R. Leplae</name></author><author><name sortKey="Hebrant, A" uniqKey="Hebrant A">A. Hebrant</name></author><author><name sortKey="Wodak, S J" uniqKey="Wodak S">S. J. Wodak</name></author><author><name sortKey="Toussaint, A" uniqKey="Toussaint A">A. Toussaint</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kurokawa, K" uniqKey="Kurokawa K">K. Kurokawa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, J" uniqKey="Xu J">J. Xu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Murphy, K C" uniqKey="Murphy K">K. C. Murphy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kruger, D H" uniqKey="Kruger D">D. H. Kruger</name></author><author><name sortKey="Bickle, T A" uniqKey="Bickle T">T. A. Bickle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Groth, A C" uniqKey="Groth A">A. C. Groth</name></author><author><name sortKey="Calos, M P" uniqKey="Calos M">M. P. Calos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, B" uniqKey="Liu B">B. Liu</name></author><author><name sortKey="Pop, M" uniqKey="Pop M">M. Pop</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lund, F" uniqKey="Lund F">F. Lund</name></author><author><name sortKey="Tybring, L" uniqKey="Tybring L">L. Tybring</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wootton, M" uniqKey="Wootton M">M. Wootton</name></author><author><name sortKey="Walsh, T R" uniqKey="Walsh T">T. R. Walsh</name></author><author><name sortKey="Macfarlane, L" uniqKey="Macfarlane L">L. Macfarlane</name></author><author><name sortKey="Howe, R A" uniqKey="Howe R">R. A. Howe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arumugam, M" uniqKey="Arumugam M">M. Arumugam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dick, G J" uniqKey="Dick G">G. J. Dick</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Duhaime, M B" uniqKey="Duhaime M">M. B. Duhaime</name></author><author><name sortKey="Wichels, A" uniqKey="Wichels A">A. Wichels</name></author><author><name sortKey="Waldmann, J" uniqKey="Waldmann J">J. Waldmann</name></author><author><name sortKey="Teeling, H" uniqKey="Teeling H">H. Teeling</name></author><author><name sortKey="Glockner, F O" uniqKey="Glockner F">F. O. Glöckner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saeed, I" uniqKey="Saeed I">I. Saeed</name></author><author><name sortKey="Tang, S L" uniqKey="Tang S">S.-L. Tang</name></author><author><name sortKey="Halgamuge, S K" uniqKey="Halgamuge S">S. K. Halgamuge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Teeling, H" uniqKey="Teeling H">H. Teeling</name></author><author><name sortKey="Meyerdierks, A" uniqKey="Meyerdierks A">A. Meyerdierks</name></author><author><name sortKey="Bauer, M" uniqKey="Bauer M">M. Bauer</name></author><author><name sortKey="Amann, R" uniqKey="Amann R">R. Amann</name></author><author><name sortKey="Glockner, F O" uniqKey="Glockner F">F. O. Glöckner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ghai, R" uniqKey="Ghai R">R. Ghai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pignatelli, M" uniqKey="Pignatelli M">M. Pignatelli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kim, S" uniqKey="Kim S">S. Kim</name></author><author><name sortKey="Rahman, M" uniqKey="Rahman M">M. Rahman</name></author><author><name sortKey="Seol, S Y" uniqKey="Seol S">S. Y. Seol</name></author><author><name sortKey="Yoon, S S" uniqKey="Yoon S">S. S. Yoon</name></author><author><name sortKey="Kim, J" uniqKey="Kim J">J. Kim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ebdon, J" uniqKey="Ebdon J">J. Ebdon</name></author><author><name sortKey="Muniesa, M" uniqKey="Muniesa M">M. Muniesa</name></author><author><name sortKey="Taylor, H" uniqKey="Taylor H">H. Taylor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gill, S R" uniqKey="Gill S">S. R. Gill</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Teeling, H" uniqKey="Teeling H">H. Teeling</name></author><author><name sortKey="Waldmann, J" uniqKey="Waldmann J">J. Waldmann</name></author><author><name sortKey="Lombardot, T" uniqKey="Lombardot T">T. Lombardot</name></author><author><name sortKey="Bauer, M" uniqKey="Bauer M">M. Bauer</name></author><author><name sortKey="Glockner, F O" uniqKey="Glockner F">F. O. Glöckner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aziz, R K" uniqKey="Aziz R">R. K. Aziz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, B V" uniqKey="Jones B">B. V. Jones</name></author><author><name sortKey="Begley, M" uniqKey="Begley M">M. Begley</name></author><author><name sortKey="Hill, C" uniqKey="Hill C">C. Hill</name></author><author><name sortKey="Gahan, C G M" uniqKey="Gahan C">C. G. M. Gahan</name></author><author><name sortKey="Marchesi, J R" uniqKey="Marchesi J">J. R. Marchesi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, B V" uniqKey="Jones B">B. V. Jones</name></author><author><name sortKey="Sun, F" uniqKey="Sun F">F. Sun</name></author><author><name sortKey="Marchesi, J R" uniqKey="Marchesi J">J. R. Marchesi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Felsenstein, J" uniqKey="Felsenstein J">J. Felsenstein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huson, D H" uniqKey="Huson D">D. H. Huson</name></author><author><name sortKey="Scornavacca, C" uniqKey="Scornavacca C">C. Scornavacca</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, S" uniqKey="Sun S">S. Sun</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schirle, M" uniqKey="Schirle M">M. Schirle</name></author><author><name sortKey="Heurtier, M" uniqKey="Heurtier M">M. Heurtier</name></author><author><name sortKey="Kuster, B" uniqKey="Kuster B">B. Kuster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schevchenko, A" uniqKey="Schevchenko A">A. Schevchenko</name></author><author><name sortKey="Tomas, H" uniqKey="Tomas H">H. Tomas</name></author><author><name sortKey="Havli, J" uniqKey="Havli J">J. Havli</name></author><author><name sortKey="Olsen, J V" uniqKey="Olsen J">J. V. Olsen</name></author><author><name sortKey="Mann, M" uniqKey="Mann M">M. Mann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thompson, J D" uniqKey="Thompson J">J. D. Thompson</name></author><author><name sortKey="Higgins, D G" uniqKey="Higgins D">D. G. Higgins</name></author><author><name sortKey="Gibson, T J" uniqKey="Gibson T">T. J. Gibson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Clarke, K R" uniqKey="Clarke K">K. R. Clarke</name></author><author><name sortKey="Gorley, R N" uniqKey="Gorley R">R. N. Gorley</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ultsch, A" uniqKey="Ultsch A">A. Ultsch</name></author><author><name sortKey="Moerchen, F" uniqKey="Moerchen F">F. Moerchen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, B V" uniqKey="Jones B">B.V. Jones</name></author><author><name sortKey="Marchesi, J R" uniqKey="Marchesi J">J. R. Marchesi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hawkins, S A" uniqKey="Hawkins S">S. A. Hawkins</name></author><author><name sortKey="Layton, A C" uniqKey="Layton A">A. C. Layton</name></author><author><name sortKey="Ripp, S" uniqKey="Ripp S">S. Ripp</name></author><author><name sortKey="Williams, D" uniqKey="Williams D">D. Williams</name></author><author><name sortKey="Sayler, G S" uniqKey="Sayler G">G. S. Sayler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Puig, M" uniqKey="Puig M">M. Puig</name></author><author><name sortKey="Jofre, J" uniqKey="Jofre J">J. Jofre</name></author><author><name sortKey="Girones, R" uniqKey="Girones R">R. Girones</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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