Metagenomes of Mediterranean Coastal Lagoons
Identifieur interne : 000334 ( Ncbi/Curation ); précédent : 000333; suivant : 000335Metagenomes of Mediterranean Coastal Lagoons
Auteurs : Rohit Ghai [Espagne] ; Claudia Mella Hernandez [Espagne] ; Antonio Picazo [Espagne] ; Carolina Megumi Mizuno [Espagne] ; Karolina Ininbergs [Suède] ; Beatriz Díez [Chili] ; Ruben Valas [États-Unis] ; Christopher L. Dupont [États-Unis] ; Katherine D. Mcmahon [États-Unis] ; Antonio Camacho [Espagne] ; Francisco Rodriguez-Valera [Espagne]Source :
- Scientific Reports [ 2045-2322 ] ; 2012.
Abstract
Coastal lagoons, both hypersaline and freshwater, are common, but still understudied ecosystems. We describe, for the first time, using high throughput sequencing, the extant microbiota of two large and representative Mediterranean coastal lagoons, the hypersaline Mar Menor, and the freshwater Albufera de Valencia, both located on the south eastern coast of Spain. We show there are considerable differences in the microbiota of both lagoons, in comparison to other marine and freshwater habitats. Importantly, a novel uncultured sulfur oxidizing Alphaproteobacteria was found to dominate bacterioplankton in the hypersaline Mar Menor. Also, in the latter prokaryotic cyanobacteria were almost exclusively comprised by
Url:
DOI: 10.1038/srep00490
PubMed: 22778901
PubMed Central: 3391805
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Genética Molecular y Microbiología, Facultad de Ciencias Biológicas</institution>, Pontificia Universidad Católica de Chile, Alameda 340, Santiago,<country>Chile</country></nlm:aff><country xml:lang="fr">Chili</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Valas, Ruben" sort="Valas, Ruben" uniqKey="Valas R" first="Ruben" last="Valas">Ruben Valas</name><affiliation wicri:level="1"><nlm:aff id="a5"><institution>J Craig Venter Institute</institution>, San Diego, CA,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Dupont, Christopher L" sort="Dupont, Christopher L" uniqKey="Dupont C" first="Christopher L." last="Dupont">Christopher L. Dupont</name><affiliation wicri:level="1"><nlm:aff id="a5"><institution>J Craig Venter Institute</institution>, San Diego, CA,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Mcmahon, Katherine D" sort="Mcmahon, Katherine D" uniqKey="Mcmahon K" first="Katherine D." last="Mcmahon">Katherine D. Mcmahon</name><affiliation wicri:level="1"><nlm:aff id="a6"><institution>Departments of Civil and Environmental Engineering and Bacteriology, University of Wisconsin Madison</institution>, Madison,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Camacho, Antonio" sort="Camacho, Antonio" uniqKey="Camacho A" first="Antonio" last="Camacho">Antonio Camacho</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>Cavanilles Institute of Biodiversity and Evolutionary Biology – University of Valencia E-46100 Burjassot</institution>,<country>Spain</country></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Rodriguez Valera, Francisco" sort="Rodriguez Valera, Francisco" uniqKey="Rodriguez Valera F" first="Francisco" last="Rodriguez-Valera">Francisco Rodriguez-Valera</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Evolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández</institution>, San Juan de Alicante, Alicante,<country>Spain</country></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Coastal lagoons, both hypersaline and freshwater, are common, but still understudied ecosystems. We describe, for the first time, using high throughput sequencing, the extant microbiota of two large and representative Mediterranean coastal lagoons, the hypersaline Mar Menor, and the freshwater Albufera de Valencia, both located on the south eastern coast of Spain. We show there are considerable differences in the microbiota of both lagoons, in comparison to other marine and freshwater habitats. Importantly, a novel uncultured sulfur oxidizing Alphaproteobacteria was found to dominate bacterioplankton in the hypersaline Mar Menor. Also, in the latter prokaryotic cyanobacteria were almost exclusively comprised by <italic>Synechococcus</italic> and no <italic>Prochlorococcus</italic> was found. Remarkably, the microbial community in the freshwaters of the hypertrophic Albufera was completely in contrast to known freshwater systems, in that there was a near absence of well known and cosmopolitan groups of ultramicrobacteria namely Low GC Actinobacteria and the LD12 lineage of Alphaproteobacteria.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Vicente, E" uniqKey="Vicente E">E. Vicente</name></author><author><name sortKey="Miracle, M A" uniqKey="Miracle M">M. A. Miracle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Soria, J M" uniqKey="Soria J">J. M. Soria</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Romo, S" uniqKey="Romo S">S. Romo</name></author><author><name sortKey="Garcia Murcia, A" uniqKey="Garcia Murcia A">A. García-Murcia</name></author><author><name sortKey="Villena, M J" uniqKey="Villena M">M. J. 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