Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production
Identifieur interne : 000557 ( Ncbi/Checkpoint ); précédent : 000556; suivant : 000558Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production
Auteurs : Andrew C. Doxey [Canada] ; Daniel A. Kurtz [Canada] ; Michael Dj Lynch [Canada] ; Laura A. Sauder [Canada] ; Josh D. Neufeld [Canada]Source :
- The ISME Journal [ 1751-7362 ] ; 2014.
Abstract
Cobalamin (vitamin B12) is a complex metabolite and essential cofactor required by many branches of life, including most eukaryotic phytoplankton. Algae and other cobalamin auxotrophs rely on environmental cobalamin supplied from a relatively small set of cobalamin-producing prokaryotic taxa. Although several
Url:
DOI: 10.1038/ismej.2014.142
PubMed: 25126756
PubMed Central: 4303638
Affiliations:
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PMC:4303638Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Aquatic metagenomes implicate <italic>Thaumarchaeota</italic>
in global cobalamin production</title>
<author><name sortKey="Doxey, Andrew C" sort="Doxey, Andrew C" uniqKey="Doxey A" first="Andrew C" last="Doxey">Andrew C. Doxey</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Biology, University of Waterloo</institution>
, Waterloo, Ontario,<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Kurtz, Daniel A" sort="Kurtz, Daniel A" uniqKey="Kurtz D" first="Daniel A" last="Kurtz">Daniel A. Kurtz</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Biology, University of Waterloo</institution>
, Waterloo, Ontario,<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Lynch, Michael Dj" sort="Lynch, Michael Dj" uniqKey="Lynch M" first="Michael Dj" last="Lynch">Michael Dj Lynch</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Biology, University of Waterloo</institution>
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<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Sauder, Laura A" sort="Sauder, Laura A" uniqKey="Sauder L" first="Laura A" last="Sauder">Laura A. Sauder</name>
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<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Neufeld, Josh D" sort="Neufeld, Josh D" uniqKey="Neufeld J" first="Josh D" last="Neufeld">Josh D. Neufeld</name>
<affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Biology, University of Waterloo</institution>
, Waterloo, Ontario,<country>Canada</country>
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<country xml:lang="fr">Canada</country>
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<series><title level="j">The ISME Journal</title>
<idno type="ISSN">1751-7362</idno>
<idno type="eISSN">1751-7370</idno>
<imprint><date when="2014">2014</date>
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<front><div type="abstract" xml:lang="en"><p>Cobalamin (vitamin B<sub>12</sub>
) is a complex metabolite and essential cofactor required by many branches of life, including most eukaryotic phytoplankton. Algae and other cobalamin auxotrophs rely on environmental cobalamin supplied from a relatively small set of cobalamin-producing prokaryotic taxa. Although several <italic>Bacteria</italic>
have been implicated in cobalamin biosynthesis and associated with algal symbiosis, the involvement of <italic>Archaea</italic>
in cobalamin production is poorly understood, especially with respect to the <italic>Thaumarchaeota</italic>
. Based on the detection of cobalamin synthesis genes in available thaumarchaeotal genomes, we hypothesized that <italic>Thaumarchaeota</italic>
, which are ubiquitous and abundant in aquatic environments, have an important role in cobalamin biosynthesis within global aquatic ecosystems. To test this hypothesis, we examined cobalamin synthesis genes across sequenced thaumarchaeotal genomes and 430 metagenomes from a diverse range of marine, freshwater and hypersaline environments. Our analysis demonstrates that all available thaumarchaeotal genomes possess cobalamin synthesis genes, predominantly from the anaerobic pathway, suggesting widespread genetic capacity for cobalamin synthesis. Furthermore, although bacterial cobalamin genes dominated most surface marine metagenomes, thaumarchaeotal cobalamin genes dominated metagenomes from polar marine environments, increased with depth in marine water columns, and displayed seasonality, with increased winter abundance observed in time-series datasets (e.g., L4 surface water in the English Channel). Our results also suggest niche partitioning between thaumarchaeotal and cyanobacterial ribosomal and cobalamin synthesis genes across all metagenomic datasets analyzed. These results provide strong evidence for specific biogeographical distributions of thaumarchaeotal cobalamin genes, expanding our understanding of the global biogeochemical roles played by <italic>Thaumarchaeota</italic>
in aquatic environments.</p>
</div>
</front>
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