metaMicrobesOnline: phylogenomic analysis of microbial communities
Identifieur interne : 000372 ( Ncbi/Checkpoint ); précédent : 000371; suivant : 000373metaMicrobesOnline: phylogenomic analysis of microbial communities
Auteurs : Dylan Chivian ; Paramvir S. Dehal ; Keith Keller ; Adam P. Arkin [États-Unis]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2012.
Abstract
The metaMicrobesOnline database (freely available at
Url:
DOI: 10.1093/nar/gks1202
PubMed: 23203984
PubMed Central: 3531168
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000580
- to stream Pmc, to step Curation: 000580
- to stream Pmc, to step Checkpoint: 000361
- to stream Ncbi, to step Merge: 000372
- to stream Ncbi, to step Curation: 000372
Links to Exploration step
PMC:3531168Le document en format XML
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<series><title level="j">Nucleic Acids Research</title>
<idno type="ISSN">0305-1048</idno>
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<front><div type="abstract" xml:lang="en"><p>The metaMicrobesOnline database (freely available at <ext-link ext-link-type="uri" xlink:href="http://meta.MicrobesOnline.org">http://meta.MicrobesOnline.org</ext-link>
) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam. Such gene trees allow for rapid homologue analysis and subfamily comparison of genes from multiple metagenomes and comparisons with genes from microbial isolates. Additionally, the genome browser permits genome context comparisons, which may be used to determine the closest sequenced genome or suggest functionally associated genes. Lastly, the domain browser permits rapid comparison of protein domain organization within genes of interest from metagenomes and complete microbial genomes.</p>
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