The Genomic Standards Consortium
Identifieur interne : 000240 ( Ncbi/Checkpoint ); précédent : 000239; suivant : 000241The Genomic Standards Consortium
Auteurs : Dawn Field [Royaume-Uni] ; Linda Amaral-Zettler [États-Unis] ; Guy Cochrane [Royaume-Uni] ; James R. Cole [États-Unis] ; Peter Dawyndt [Belgique] ; George M. Garrity [États-Unis] ; Jack Gilbert [États-Unis] ; Frank Oliver Glöckner [Allemagne] ; Lynette Hirschman [États-Unis] ; Ilene Karsch-Mizrachi [États-Unis] ; Hans-Peter Klenk [Allemagne] ; Rob Knight [États-Unis] ; Renzo Kottmann [Allemagne] ; Nikos Kyrpides [États-Unis] ; Folker Meyer [États-Unis] ; Inigo San Gil [États-Unis] ; Susanna-Assunta Sansone [Royaume-Uni] ; Lynn M. Schriml [États-Unis] ; Peter Sterk [Royaume-Uni] ; Tatiana Tatusova [États-Unis] ; David W. Ussery [Danemark] ; Owen White [États-Unis] ; John Wooley [États-Unis]Source :
- PLoS Biology [ 1544-9173 ] ; 2011.
Abstract
A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major effort across the 'omics world. At the heart of this effort is the Genomic Standards Consortium (GSC), an open-membership organization that drives community-based standardization activities, Here we provide a short history of the GSC, provide an overview of its range of current activities, and make a call for the scientific community to join forces to improve the quality and quantity of contextual information about our public collections of genomes, metagenomes, and marker gene sequences.
Url:
DOI: 10.1371/journal.pbio.1001088
PubMed: 21713030
PubMed Central: 3119656
Affiliations:
- Allemagne, Belgique, Danemark, Royaume-Uni, États-Unis
- Angleterre, Brême (Land), Californie, Colorado, Illinois, Maryland, Massachusetts, Michigan, Nouveau-Mexique, Oxfordshire
- Brême, East Lansing, Oxford
- Université d'Oxford, Université d'État du Michigan
Links toward previous steps (curation, corpus...)
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PMC:3119656Le document en format XML
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<author><name sortKey="Amaral Zettler, Linda" sort="Amaral Zettler, Linda" uniqKey="Amaral Zettler L" first="Linda" last="Amaral-Zettler">Linda Amaral-Zettler</name>
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<author><name sortKey="Cochrane, Guy" sort="Cochrane, Guy" uniqKey="Cochrane G" first="Guy" last="Cochrane">Guy Cochrane</name>
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<author><name sortKey="Cole, James R" sort="Cole, James R" uniqKey="Cole J" first="James R." last="Cole">James R. Cole</name>
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<author><name sortKey="Dawyndt, Peter" sort="Dawyndt, Peter" uniqKey="Dawyndt P" first="Peter" last="Dawyndt">Peter Dawyndt</name>
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<author><name sortKey="Gilbert, Jack" sort="Gilbert, Jack" uniqKey="Gilbert J" first="Jack" last="Gilbert">Jack Gilbert</name>
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<country xml:lang="fr">États-Unis</country>
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<placeName><region type="state">Illinois</region>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Ecology and Evolution, University of Chicago, Chicago, Illinois</wicri:regionArea>
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<author><name sortKey="Glockner, Frank Oliver" sort="Glockner, Frank Oliver" uniqKey="Glockner F" first="Frank Oliver" last="Glöckner">Frank Oliver Glöckner</name>
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</nlm:aff>
<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Hirschman, Lynette" sort="Hirschman, Lynette" uniqKey="Hirschman L" first="Lynette" last="Hirschman">Lynette Hirschman</name>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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</affiliation>
</author>
<author><name sortKey="Karsch Mizrachi, Ilene" sort="Karsch Mizrachi, Ilene" uniqKey="Karsch Mizrachi I" first="Ilene" last="Karsch-Mizrachi">Ilene Karsch-Mizrachi</name>
<affiliation wicri:level="2"><nlm:aff id="aff11"><addr-line>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name>
<affiliation wicri:level="1"><nlm:aff id="aff12"><addr-line>DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany</addr-line>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig</wicri:regionArea>
<wicri:noRegion>Braunschweig</wicri:noRegion>
<wicri:noRegion>Braunschweig</wicri:noRegion>
<wicri:noRegion>Braunschweig</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name>
<affiliation wicri:level="2"><nlm:aff id="aff13"><addr-line>Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado</wicri:regionArea>
<placeName><region type="state">Colorado</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kottmann, Renzo" sort="Kottmann, Renzo" uniqKey="Kottmann R" first="Renzo" last="Kottmann">Renzo Kottmann</name>
<affiliation wicri:level="3"><nlm:aff id="aff9"><addr-line>Microbial Genomics Group, Max Planck Institute for Marine Microbiology and Jacobs University Bremen, Bremen, Germany</addr-line>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Microbial Genomics Group, Max Planck Institute for Marine Microbiology and Jacobs University Bremen, Bremen</wicri:regionArea>
<placeName><region type="land" nuts="3">Brême (Land)</region>
<settlement type="city">Brême</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kyrpides, Nikos" sort="Kyrpides, Nikos" uniqKey="Kyrpides N" first="Nikos" last="Kyrpides">Nikos Kyrpides</name>
<affiliation wicri:level="2"><nlm:aff id="aff14"><addr-line>DOE Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>DOE Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Meyer, Folker" sort="Meyer, Folker" uniqKey="Meyer F" first="Folker" last="Meyer">Folker Meyer</name>
<affiliation wicri:level="2"><nlm:aff id="aff7"><addr-line>Argonne National Laboratory, Argonne, Illinois, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Argonne National Laboratory, Argonne, Illinois</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff15"><addr-line>Computation Institute, University of Chicago, Chicago, Illinois, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Computation Institute, University of Chicago, Chicago, Illinois</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="San Gil, Inigo" sort="San Gil, Inigo" uniqKey="San Gil I" first="Inigo" last="San Gil">Inigo San Gil</name>
<affiliation wicri:level="2"><nlm:aff id="aff16"><addr-line>LTER Network Office, Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>LTER Network Office, Department of Biology, University of New Mexico, Albuquerque, New Mexico</wicri:regionArea>
<placeName><region type="state">Nouveau-Mexique</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<affiliation wicri:level="4"><nlm:aff id="aff17"><addr-line>University of Oxford, Oxford e-Research Centre, Oxford, United Kingdom</addr-line>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>University of Oxford, Oxford e-Research Centre, Oxford</wicri:regionArea>
<placeName><settlement type="city">Oxford</settlement>
<region type="country">Angleterre</region>
<region type="comté" nuts="2">Oxfordshire</region>
</placeName>
<orgName type="university">Université d'Oxford</orgName>
</affiliation>
</author>
<author><name sortKey="Schriml, Lynn M" sort="Schriml, Lynn M" uniqKey="Schriml L" first="Lynn M." last="Schriml">Lynn M. Schriml</name>
<affiliation wicri:level="2"><nlm:aff id="aff18"><addr-line>Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sterk, Peter" sort="Sterk, Peter" uniqKey="Sterk P" first="Peter" last="Sterk">Peter Sterk</name>
<affiliation wicri:level="1"><nlm:aff id="aff19"><addr-line>Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom</addr-line>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tatusova, Tatiana" sort="Tatusova, Tatiana" uniqKey="Tatusova T" first="Tatiana" last="Tatusova">Tatiana Tatusova</name>
<affiliation wicri:level="2"><nlm:aff id="aff11"><addr-line>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ussery, David W" sort="Ussery, David W" uniqKey="Ussery D" first="David W." last="Ussery">David W. Ussery</name>
<affiliation wicri:level="1"><nlm:aff id="aff20"><addr-line>Center for Biological Sequence Analysis, The Technical University of Denmark, Lyngby, Denmark</addr-line>
</nlm:aff>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea>Center for Biological Sequence Analysis, The Technical University of Denmark, Lyngby</wicri:regionArea>
<wicri:noRegion>Lyngby</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="White, Owen" sort="White, Owen" uniqKey="White O" first="Owen" last="White">Owen White</name>
<affiliation wicri:level="2"><nlm:aff id="aff18"><addr-line>Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wooley, John" sort="Wooley, John" uniqKey="Wooley J" first="John" last="Wooley">John Wooley</name>
<affiliation wicri:level="2"><nlm:aff id="aff21"><addr-line>University of California San Diego, La Jolla, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>University of California San Diego, La Jolla, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS Biology</title>
<idno type="ISSN">1544-9173</idno>
<idno type="eISSN">1545-7885</idno>
<imprint><date when="2011">2011</date>
</imprint>
</series>
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<profileDesc><textClass></textClass>
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</teiHeader>
<front><div type="abstract" xml:lang="en"><p>A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major effort across the 'omics world. At the heart of this effort is the Genomic Standards Consortium (GSC), an open-membership organization that drives community-based standardization activities, Here we provide a short history of the GSC, provide an overview of its range of current activities, and make a call for the scientific community to join forces to improve the quality and quantity of contextual information about our public collections of genomes, metagenomes, and marker gene sequences.</p>
</div>
</front>
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</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>Allemagne</li>
<li>Belgique</li>
<li>Danemark</li>
<li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
<region><li>Angleterre</li>
<li>Brême (Land)</li>
<li>Californie</li>
<li>Colorado</li>
<li>Illinois</li>
<li>Maryland</li>
<li>Massachusetts</li>
<li>Michigan</li>
<li>Nouveau-Mexique</li>
<li>Oxfordshire</li>
</region>
<settlement><li>Brême</li>
<li>East Lansing</li>
<li>Oxford</li>
</settlement>
<orgName><li>Université d'Oxford</li>
<li>Université d'État du Michigan</li>
</orgName>
</list>
<tree><country name="Royaume-Uni"><noRegion><name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
</noRegion>
<name sortKey="Cochrane, Guy" sort="Cochrane, Guy" uniqKey="Cochrane G" first="Guy" last="Cochrane">Guy Cochrane</name>
<name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<name sortKey="Sterk, Peter" sort="Sterk, Peter" uniqKey="Sterk P" first="Peter" last="Sterk">Peter Sterk</name>
</country>
<country name="États-Unis"><region name="Massachusetts"><name sortKey="Amaral Zettler, Linda" sort="Amaral Zettler, Linda" uniqKey="Amaral Zettler L" first="Linda" last="Amaral-Zettler">Linda Amaral-Zettler</name>
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<name sortKey="Cole, James R" sort="Cole, James R" uniqKey="Cole J" first="James R." last="Cole">James R. Cole</name>
<name sortKey="Garrity, George M" sort="Garrity, George M" uniqKey="Garrity G" first="George M." last="Garrity">George M. Garrity</name>
<name sortKey="Gilbert, Jack" sort="Gilbert, Jack" uniqKey="Gilbert J" first="Jack" last="Gilbert">Jack Gilbert</name>
<name sortKey="Gilbert, Jack" sort="Gilbert, Jack" uniqKey="Gilbert J" first="Jack" last="Gilbert">Jack Gilbert</name>
<name sortKey="Hirschman, Lynette" sort="Hirschman, Lynette" uniqKey="Hirschman L" first="Lynette" last="Hirschman">Lynette Hirschman</name>
<name sortKey="Karsch Mizrachi, Ilene" sort="Karsch Mizrachi, Ilene" uniqKey="Karsch Mizrachi I" first="Ilene" last="Karsch-Mizrachi">Ilene Karsch-Mizrachi</name>
<name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name>
<name sortKey="Kyrpides, Nikos" sort="Kyrpides, Nikos" uniqKey="Kyrpides N" first="Nikos" last="Kyrpides">Nikos Kyrpides</name>
<name sortKey="Meyer, Folker" sort="Meyer, Folker" uniqKey="Meyer F" first="Folker" last="Meyer">Folker Meyer</name>
<name sortKey="Meyer, Folker" sort="Meyer, Folker" uniqKey="Meyer F" first="Folker" last="Meyer">Folker Meyer</name>
<name sortKey="San Gil, Inigo" sort="San Gil, Inigo" uniqKey="San Gil I" first="Inigo" last="San Gil">Inigo San Gil</name>
<name sortKey="Schriml, Lynn M" sort="Schriml, Lynn M" uniqKey="Schriml L" first="Lynn M." last="Schriml">Lynn M. Schriml</name>
<name sortKey="Tatusova, Tatiana" sort="Tatusova, Tatiana" uniqKey="Tatusova T" first="Tatiana" last="Tatusova">Tatiana Tatusova</name>
<name sortKey="White, Owen" sort="White, Owen" uniqKey="White O" first="Owen" last="White">Owen White</name>
<name sortKey="Wooley, John" sort="Wooley, John" uniqKey="Wooley J" first="John" last="Wooley">John Wooley</name>
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<country name="Belgique"><noRegion><name sortKey="Dawyndt, Peter" sort="Dawyndt, Peter" uniqKey="Dawyndt P" first="Peter" last="Dawyndt">Peter Dawyndt</name>
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<country name="Allemagne"><region name="Brême (Land)"><name sortKey="Glockner, Frank Oliver" sort="Glockner, Frank Oliver" uniqKey="Glockner F" first="Frank Oliver" last="Glöckner">Frank Oliver Glöckner</name>
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<name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name>
<name sortKey="Kottmann, Renzo" sort="Kottmann, Renzo" uniqKey="Kottmann R" first="Renzo" last="Kottmann">Renzo Kottmann</name>
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<country name="Danemark"><noRegion><name sortKey="Ussery, David W" sort="Ussery, David W" uniqKey="Ussery D" first="David W." last="Ussery">David W. Ussery</name>
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</record>
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