Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Identifieur interne : 001217 ( Main/Merge ); précédent : 001216; suivant : 001218Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Auteurs : Simon Roux [États-Unis] ; Steven J. Hallam [Canada] ; Tanja Woyke [États-Unis] ; Matthew B. Sullivan [États-Unis]Source :
- eLife [ 2050-084X ] ; ????.
Abstract
The ecological importance of viruses is now widely recognized, yet our limited knowledge of viral sequence space and virus–host interactions precludes accurate prediction of their roles and impacts. In this study, we mined publicly available bacterial and archaeal genomic data sets to identify 12,498 high-confidence viral genomes linked to their microbial hosts. These data augment public data sets 10-fold, provide first viral sequences for 13 new bacterial phyla including ecologically abundant phyla, and help taxonomically identify 7–38% of ‘unknown’ sequence space in viromes. Genome- and network-based classification was largely consistent with accepted viral taxonomy and suggested that (i) 264 new viral genera were identified (doubling known genera) and (ii) cross-taxon genomic recombination is limited. Further analyses provided empirical data on extrachromosomal prophages and coinfection prevalences, as well as evaluation of in silico virus–host linkage predictions. Together these findings illustrate the value of mining viral signal from microbial genomes.
Url:
DOI: 10.7554/eLife.08490
PubMed: 26200428
PubMed Central: 4533152
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000092
- to stream Pmc, to step Curation: 000092
- to stream Pmc, to step Checkpoint: 000720
- to stream Ncbi, to step Merge: 000654
- to stream Ncbi, to step Curation: 000654
- to stream Ncbi, to step Checkpoint: 000654
Links to Exploration step
PMC:4533152Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Viral dark matter and virus–host interactions resolved from publicly available microbial genomes</title><author><name sortKey="Roux, Simon" sort="Roux, Simon" uniqKey="Roux S" first="Simon" last="Roux">Simon Roux</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution content-type="dept">Department of Ecology and Evolutionary Biology</institution>,<institution>University of Arizona</institution>,<addr-line>Tucson</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hallam, Steven J" sort="Hallam, Steven J" uniqKey="Hallam S" first="Steven J" last="Hallam">Steven J. Hallam</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution content-type="dept">Department of Microbiology and Immunology</institution>,<institution>University of British Columbia</institution>,<addr-line>Vancouver</addr-line>,<country>Canada</country></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution content-type="dept">Graduate Program in Bioinformatics</institution>,<institution>University of British Columbia</institution>,<addr-line>Vancouver</addr-line>,<country>Canada</country></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Woyke, Tanja" sort="Woyke, Tanja" uniqKey="Woyke T" first="Tanja" last="Woyke">Tanja Woyke</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>U.S Department of Energy Joint Genome Institute</institution>,<addr-line>Walnut Creek</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sullivan, Matthew B" sort="Sullivan, Matthew B" uniqKey="Sullivan M" first="Matthew B" last="Sullivan">Matthew B. Sullivan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution content-type="dept">Department of Ecology and Evolutionary Biology</institution>,<institution>University of Arizona</institution>,<addr-line>Tucson</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26200428</idno><idno type="pmc">4533152</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4533152</idno><idno type="RBID">PMC:4533152</idno><idno type="doi">10.7554/eLife.08490</idno><date when="????">????</date><idno type="wicri:Area/Pmc/Corpus">000092</idno><idno type="wicri:Area/Pmc/Curation">000092</idno><idno type="wicri:Area/Pmc/Checkpoint">000720</idno><idno type="wicri:Area/Ncbi/Merge">000654</idno><idno type="wicri:Area/Ncbi/Curation">000654</idno><idno type="wicri:Area/Ncbi/Checkpoint">000654</idno><idno type="wicri:doubleKey">2050-084X:????:Roux S:viral:dark:matter</idno><idno type="wicri:Area/Main/Merge">001217</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Viral dark matter and virus–host interactions resolved from publicly available microbial genomes</title><author><name sortKey="Roux, Simon" sort="Roux, Simon" uniqKey="Roux S" first="Simon" last="Roux">Simon Roux</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution content-type="dept">Department of Ecology and Evolutionary Biology</institution>,<institution>University of Arizona</institution>,<addr-line>Tucson</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hallam, Steven J" sort="Hallam, Steven J" uniqKey="Hallam S" first="Steven J" last="Hallam">Steven J. Hallam</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution content-type="dept">Department of Microbiology and Immunology</institution>,<institution>University of British Columbia</institution>,<addr-line>Vancouver</addr-line>,<country>Canada</country></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution content-type="dept">Graduate Program in Bioinformatics</institution>,<institution>University of British Columbia</institution>,<addr-line>Vancouver</addr-line>,<country>Canada</country></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Woyke, Tanja" sort="Woyke, Tanja" uniqKey="Woyke T" first="Tanja" last="Woyke">Tanja Woyke</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>U.S Department of Energy Joint Genome Institute</institution>,<addr-line>Walnut Creek</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sullivan, Matthew B" sort="Sullivan, Matthew B" uniqKey="Sullivan M" first="Matthew B" last="Sullivan">Matthew B. Sullivan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution content-type="dept">Department of Ecology and Evolutionary Biology</institution>,<institution>University of Arizona</institution>,<addr-line>Tucson</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">eLife</title><idno type="ISSN">2050-084X</idno><idno type="eISSN">2050-084X</idno><imprint><date when="????">????</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The ecological importance of viruses is now widely recognized, yet our limited knowledge of viral sequence space and virus–host interactions precludes accurate prediction of their roles and impacts. In this study, we mined publicly available bacterial and archaeal genomic data sets to identify 12,498 high-confidence viral genomes linked to their microbial hosts. These data augment public data sets 10-fold, provide first viral sequences for 13 new bacterial phyla including ecologically abundant phyla, and help taxonomically identify 7–38% of ‘unknown’ sequence space in viromes. Genome- and network-based classification was largely consistent with accepted viral taxonomy and suggested that (i) 264 new viral genera were identified (doubling known genera) and (ii) cross-taxon genomic recombination is limited. Further analyses provided empirical data on extrachromosomal prophages and coinfection prevalences, as well as evaluation of in silico virus–host linkage predictions. Together these findings illustrate the value of mining viral signal from microbial genomes.</p><p><bold>DOI:</bold><ext-link ext-link-type="doi" xlink:href="10.7554/eLife.08490.001">http://dx.doi.org/10.7554/eLife.08490.001</ext-link></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abedon, St" uniqKey="Abedon S">ST Abedon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Akhter, S" uniqKey="Akhter S">S Akhter</name></author><author><name sortKey="Aziz, Rk" uniqKey="Aziz R">RK Aziz</name></author><author><name sortKey="Edwards, Ra" uniqKey="Edwards R">RA Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allers, E" uniqKey="Allers E">E Allers</name></author><author><name sortKey="Moraru, C" uniqKey="Moraru C">C Moraru</name></author><author><name sortKey="Duhaime, Mb" uniqKey="Duhaime M">MB Duhaime</name></author><author><name sortKey="Beneze, E" uniqKey="Beneze E">E Beneze</name></author><author><name sortKey="Solonenko, N" uniqKey="Solonenko N">N Solonenko</name></author><author><name sortKey="Canosa, Jb" uniqKey="Canosa J">JB Canosa</name></author><author><name sortKey="Amann, R" uniqKey="Amann R">R Amann</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allers, E" uniqKey="Allers E">E Allers</name></author><author><name sortKey="Wright, Jj" uniqKey="Wright J">JJ Wright</name></author><author><name sortKey="Konwar, Km" uniqKey="Konwar K">KM Konwar</name></author><author><name sortKey="Howes, Cg" uniqKey="Howes C">CG Howes</name></author><author><name sortKey="Beneze, E" uniqKey="Beneze E">E Beneze</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Andersson, Af" uniqKey="Andersson A">AF Andersson</name></author><author><name sortKey="Banfield, Jf" uniqKey="Banfield J">JF Banfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bankevich, A" uniqKey="Bankevich A">A Bankevich</name></author><author><name sortKey="Nurk, S" uniqKey="Nurk S">S Nurk</name></author><author><name sortKey="Antipov, D" uniqKey="Antipov D">D Antipov</name></author><author><name sortKey="Gurevich, Aa" uniqKey="Gurevich A">AA Gurevich</name></author><author><name sortKey="Dvorkin, M" uniqKey="Dvorkin M">M Dvorkin</name></author><author><name sortKey="Kulikov, As" uniqKey="Kulikov A">AS Kulikov</name></author><author><name sortKey="Lesin, Vm" uniqKey="Lesin V">VM Lesin</name></author><author><name sortKey="Nikolenko, Si" uniqKey="Nikolenko S">SI Nikolenko</name></author><author><name sortKey="Pham, S" uniqKey="Pham S">S Pham</name></author><author><name sortKey="Prjibelski, Ad" uniqKey="Prjibelski A">AD Prjibelski</name></author><author><name sortKey="Pyshkin, Av" uniqKey="Pyshkin A">AV Pyshkin</name></author><author><name sortKey="Sirotkin, Av" uniqKey="Sirotkin A">AV Sirotkin</name></author><author><name sortKey="Vyahhi, N" uniqKey="Vyahhi N">N Vyahhi</name></author><author><name sortKey="Tesler, G" uniqKey="Tesler G">G Tesler</name></author><author><name sortKey="Alekseyev, Ma" uniqKey="Alekseyev M">MA Alekseyev</name></author><author><name sortKey="Pevzner, Pa" uniqKey="Pevzner P">PA Pevzner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bastias, R" uniqKey="Bastias R">R Bastías</name></author><author><name sortKey="Higuera, G" uniqKey="Higuera G">G Higuera</name></author><author><name sortKey="Sierralta, W" uniqKey="Sierralta W">W Sierralta</name></author><author><name sortKey="Espejo, Rt" uniqKey="Espejo R">RT Espejo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brum, J" uniqKey="Brum J">J Brum</name></author><author><name sortKey="Ignacio Espinoza, J" uniqKey="Ignacio Espinoza J">J Ignacio-Espinoza</name></author><author><name sortKey="Roux, S" uniqKey="Roux S">S Roux</name></author><author><name sortKey="Doulcier, G" uniqKey="Doulcier G">G Doulcier</name></author><author><name sortKey="Acinas, Sg" uniqKey="Acinas S">SG Acinas</name></author><author><name sortKey="Alberti, A" uniqKey="Alberti A">A Alberti</name></author><author><name sortKey="Chaffron, S" uniqKey="Chaffron S">S Chaffron</name></author><author><name sortKey="Cruaud, C" uniqKey="Cruaud C">C Cruaud</name></author><author><name sortKey="De Vargas, C" uniqKey="De Vargas C">C de Vargas</name></author><author><name sortKey="Gasol, Jm" uniqKey="Gasol J">JM Gasol</name></author><author><name sortKey="Gorsky, G" uniqKey="Gorsky G">G Gorsky</name></author><author><name sortKey="Gregory, Ac" uniqKey="Gregory A">AC Gregory</name></author><author><name sortKey="Ogata, H" uniqKey="Ogata H">H Ogata</name></author><author><name sortKey="Pesant, S" uniqKey="Pesant S">S Pesant</name></author><author><name sortKey="Poulos, Bt" uniqKey="Poulos B">BT Poulos</name></author><author><name sortKey="Schwenck, Sm" uniqKey="Schwenck S">SM Schwenck</name></author><author><name sortKey="Speich, S" uniqKey="Speich S">S Speich</name></author><author><name sortKey="Dimier, C" uniqKey="Dimier C">C Dimier</name></author><author><name sortKey="Kandels Lewis, S" uniqKey="Kandels Lewis S">S Kandels-Lewis</name></author><author><name sortKey="Picheral, M" uniqKey="Picheral M">M Picheral</name></author><author><name sortKey="Searson, S" uniqKey="Searson S">S Searson</name></author><author><name sortKey="Bork, P" uniqKey="Bork P">P Bork</name></author><author><name sortKey="Bowler, C" uniqKey="Bowler C">C Bowler</name></author><author><name sortKey="Sunagawa, S" uniqKey="Sunagawa S">S Sunagawa</name></author><author><name sortKey="Wincker, P" uniqKey="Wincker P">P Wincker</name></author><author><name sortKey="Karsenti, E" uniqKey="Karsenti E">E Karsenti</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brum, Jr" uniqKey="Brum J">JR Brum</name></author><author><name sortKey="Jeffrey Morris, J" uniqKey="Jeffrey Morris J">J Jeffrey Morris</name></author><author><name sortKey="Decima, M" uniqKey="Decima M">M Décima</name></author><author><name sortKey="Stukel, Mr" uniqKey="Stukel M">MR Stukel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brum, Jr" uniqKey="Brum J">JR Brum</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Canchaya, C" uniqKey="Canchaya C">C Canchaya</name></author><author><name sortKey="Fournous, G" uniqKey="Fournous G">G Fournous</name></author><author><name sortKey="Brussow, H" uniqKey="Brussow H">H Brüssow</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carbone, A" uniqKey="Carbone A">A Carbone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cardinale, Dj" uniqKey="Cardinale D">DJ Cardinale</name></author><author><name sortKey="Duffy, S" uniqKey="Duffy S">S Duffy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carey Smith, Gv" uniqKey="Carey Smith G">GV Carey-Smith</name></author><author><name sortKey="Billington, C" uniqKey="Billington C">C Billington</name></author><author><name sortKey="Cornelius, Aj" uniqKey="Cornelius A">AJ Cornelius</name></author><author><name sortKey="Hudson, Ja" uniqKey="Hudson J">JA Hudson</name></author><author><name sortKey="Heinemann, Ja" uniqKey="Heinemann J">JA Heinemann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Casjens, S" uniqKey="Casjens S">S Casjens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Castelle, Cj" uniqKey="Castelle C">CJ Castelle</name></author><author><name sortKey="Hug, La" uniqKey="Hug L">LA Hug</name></author><author><name sortKey="Wrighton, Kc" uniqKey="Wrighton K">KC Wrighton</name></author><author><name sortKey="Thomas, Bc" uniqKey="Thomas B">BC Thomas</name></author><author><name sortKey="Williams, Kh" uniqKey="Williams K">KH Williams</name></author><author><name sortKey="Wu, D" uniqKey="Wu D">D Wu</name></author><author><name sortKey="Tringe, Sg" uniqKey="Tringe S">SG Tringe</name></author><author><name sortKey="Singer, Sw" uniqKey="Singer S">SW Singer</name></author><author><name sortKey="Eisen, Ja" uniqKey="Eisen J">JA Eisen</name></author><author><name sortKey="Banfield, Jf" uniqKey="Banfield J">JF Banfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Clemente, Jc" uniqKey="Clemente J">JC Clemente</name></author><author><name sortKey="Ursell, Lk" uniqKey="Ursell L">LK Ursell</name></author><author><name sortKey="Parfrey, Lw" uniqKey="Parfrey L">LW Parfrey</name></author><author><name sortKey="Knight, R" uniqKey="Knight R">R Knight</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Davis, Ma" uniqKey="Davis M">MA Davis</name></author><author><name sortKey="Martin, Ka" uniqKey="Martin K">KA Martin</name></author><author><name sortKey="Austin, Sj" uniqKey="Austin S">SJ Austin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF DeLong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deng, L" uniqKey="Deng L">L Deng</name></author><author><name sortKey="Ignacio Espinoza, Jc" uniqKey="Ignacio Espinoza J">JC Ignacio-Espinoza</name></author><author><name sortKey="Gregory, A" uniqKey="Gregory A">A Gregory</name></author><author><name sortKey="Poulos, Bt" uniqKey="Poulos B">BT Poulos</name></author><author><name sortKey="Weitz, Js" uniqKey="Weitz J">JS Weitz</name></author><author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Diemer, Gs" uniqKey="Diemer G">GS Diemer</name></author><author><name sortKey="Stedman, Km" uniqKey="Stedman K">KM Stedman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Emerson, Jb" uniqKey="Emerson J">JB Emerson</name></author><author><name sortKey="Thomas, Bc" uniqKey="Thomas B">BC Thomas</name></author><author><name sortKey="Alvarez, W" uniqKey="Alvarez W">W Alvarez</name></author><author><name sortKey="Banfield, Jf" uniqKey="Banfield J">JF Banfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Enav, H" uniqKey="Enav H">H Enav</name></author><author><name sortKey="Beja, O" uniqKey="Beja O">O Béjà</name></author><author><name sortKey="Mandel Gutfreund, Y" uniqKey="Mandel Gutfreund Y">Y Mandel-Gutfreund</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Enright, Aj" uniqKey="Enright A">AJ Enright</name></author><author><name sortKey="Van Dongen, S" uniqKey="Van Dongen S">S Van Dongen</name></author><author><name sortKey="Ouzounis, Ca" uniqKey="Ouzounis C">CA Ouzounis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Falkowski, Pg" uniqKey="Falkowski P">PG Falkowski</name></author><author><name sortKey="Fenchel, T" uniqKey="Fenchel T">T Fenchel</name></author><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF Delong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fischer, Cr" uniqKey="Fischer C">CR Fischer</name></author><author><name sortKey="Yoichi, M" uniqKey="Yoichi M">M Yoichi</name></author><author><name sortKey="Unno, H" uniqKey="Unno H">H Unno</name></author><author><name sortKey="Tanji, Y" uniqKey="Tanji Y">Y Tanji</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Flores, Co" uniqKey="Flores C">CO Flores</name></author><author><name sortKey="Meyer, Jr" uniqKey="Meyer J">JR Meyer</name></author><author><name sortKey="Valverde, S" uniqKey="Valverde S">S Valverde</name></author><author><name sortKey="Farr, L" uniqKey="Farr L">L Farr</name></author><author><name sortKey="Weitz, Js" uniqKey="Weitz J">JS Weitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Flores, Co" uniqKey="Flores C">CO Flores</name></author><author><name sortKey="Valverde, S" uniqKey="Valverde S">S Valverde</name></author><author><name sortKey="Weitz, Js" uniqKey="Weitz J">JS Weitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Forterre, P" uniqKey="Forterre P">P Forterre</name></author><author><name sortKey="Prangishvili, D" uniqKey="Prangishvili D">D Prangishvili</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fouts, De" uniqKey="Fouts D">DE Fouts</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garrett, Ra" uniqKey="Garrett R">RA Garrett</name></author><author><name sortKey="Prangishvili, D" uniqKey="Prangishvili D">D Prangishvili</name></author><author><name sortKey="Shah, Sa" uniqKey="Shah S">SA Shah</name></author><author><name sortKey="Reuter, M" uniqKey="Reuter M">M Reuter</name></author><author><name sortKey="Stetter, Ko" uniqKey="Stetter K">KO Stetter</name></author><author><name sortKey="Peng, X" uniqKey="Peng X">X Peng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hanson, Ca" uniqKey="Hanson C">CA Hanson</name></author><author><name sortKey="Fuhrman, Ja" uniqKey="Fuhrman J">JA Fuhrman</name></author><author><name sortKey="Horner Devine, Mc" uniqKey="Horner Devine M">MC Horner-Devine</name></author><author><name sortKey="Martiny, Jb" uniqKey="Martiny J">JB Martiny</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hendrix, Rw" uniqKey="Hendrix R">RW Hendrix</name></author><author><name sortKey="Smith, Mc" uniqKey="Smith M">MC Smith</name></author><author><name sortKey="Burns, Rn" uniqKey="Burns R">RN Burns</name></author><author><name sortKey="Ford, Me" uniqKey="Ford M">ME Ford</name></author><author><name sortKey="Hatfull, Gf" uniqKey="Hatfull G">GF Hatfull</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hurwitz, Bl" uniqKey="Hurwitz B">BL Hurwitz</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hurwitz, Bl" uniqKey="Hurwitz B">BL Hurwitz</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ignacio Espinoza, Jc" uniqKey="Ignacio Espinoza J">JC Ignacio-Espinoza</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jia, B" uniqKey="Jia B">B Jia</name></author><author><name sortKey="Xuan, L" uniqKey="Xuan L">L Xuan</name></author><author><name sortKey="Cai, K" uniqKey="Cai K">K Cai</name></author><author><name sortKey="Hu, Z" uniqKey="Hu Z">Z Hu</name></author><author><name sortKey="Ma, L" uniqKey="Ma L">L Ma</name></author><author><name sortKey="Wei, C" uniqKey="Wei C">C Wei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kamke, J" uniqKey="Kamke J">J Kamke</name></author><author><name sortKey="Sczyrba, A" uniqKey="Sczyrba A">A Sczyrba</name></author><author><name sortKey="Ivanova, N" uniqKey="Ivanova N">N Ivanova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kashtan, N" uniqKey="Kashtan N">N Kashtan</name></author><author><name sortKey="Roggensack, Se" uniqKey="Roggensack S">SE Roggensack</name></author><author><name sortKey="Rodrigue, S" uniqKey="Rodrigue S">S Rodrigue</name></author><author><name sortKey="Thompson, Jw" uniqKey="Thompson J">JW Thompson</name></author><author><name sortKey="Biller, Sj" uniqKey="Biller S">SJ Biller</name></author><author><name sortKey="Coe, A" uniqKey="Coe A">A Coe</name></author><author><name sortKey="Ding, H" uniqKey="Ding H">H Ding</name></author><author><name sortKey="Marttinen, P" uniqKey="Marttinen P">P Marttinen</name></author><author><name sortKey="Malmstrom, Rr" uniqKey="Malmstrom R">RR Malmstrom</name></author><author><name sortKey="Stocker, R" uniqKey="Stocker R">R Stocker</name></author><author><name sortKey="Follows, Mj" uniqKey="Follows M">MJ Follows</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author><author><name sortKey="Chisholm, Sw" uniqKey="Chisholm S">SW Chisholm</name></author><author><name sortKey="Biller, J" uniqKey="Biller J">J Biller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kim, Ms" uniqKey="Kim M">MS Kim</name></author><author><name sortKey="Park, Ej" uniqKey="Park E">EJ Park</name></author><author><name sortKey="Roh, Sw" uniqKey="Roh S">SW Roh</name></author><author><name sortKey="Bae, Jw" uniqKey="Bae J">JW Bae</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name></author><author><name sortKey="Senkevich, Tg" uniqKey="Senkevich T">TG Senkevich</name></author><author><name sortKey="Dolja, Vv" uniqKey="Dolja V">VV Dolja</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krupovic, M" uniqKey="Krupovic M">M Krupovic</name></author><author><name sortKey="Zhi, N" uniqKey="Zhi N">N Zhi</name></author><author><name sortKey="Li, J" uniqKey="Li J">J Li</name></author><author><name sortKey="Hu, G" uniqKey="Hu G">G Hu</name></author><author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name></author><author><name sortKey="Wong, S" uniqKey="Wong S">S Wong</name></author><author><name sortKey="Shevchenko, S" uniqKey="Shevchenko S">S Shevchenko</name></author><author><name sortKey="Zhao, K" uniqKey="Zhao K">K Zhao</name></author><author><name sortKey="Young, Ns" uniqKey="Young N">NS Young</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Labonte, Jm" uniqKey="Labonte J">JM Labonté</name></author><author><name sortKey="Swan, Bk" uniqKey="Swan B">BK Swan</name></author><author><name sortKey="Poulos, Bt" uniqKey="Poulos B">BT Poulos</name></author><author><name sortKey="Luo, H" uniqKey="Luo H">H Luo</name></author><author><name sortKey="Koren, S" uniqKey="Koren S">S Koren</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author><author><name sortKey="Woyke, T" uniqKey="Woyke T">T Woyke</name></author><author><name sortKey="Wommack, Ek" uniqKey="Wommack E">EK Wommack</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Labonte, Jm" uniqKey="Labonte J">JM Labonté</name></author><author><name sortKey="Suttle, Ca" uniqKey="Suttle C">CA Suttle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leplae, R" uniqKey="Leplae R">R Leplae</name></author><author><name sortKey="Lima Mendez, G" uniqKey="Lima Mendez G">G Lima-Mendez</name></author><author><name sortKey="Toussaint, A" uniqKey="Toussaint A">A Toussaint</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lima Mendez, G" uniqKey="Lima Mendez G">G Lima-Mendez</name></author><author><name sortKey="Van Helden, J" uniqKey="Van Helden J">J Van Helden</name></author><author><name sortKey="Toussaint, A" uniqKey="Toussaint A">A Toussaint</name></author><author><name sortKey="Leplae, R" uniqKey="Leplae R">R Leplae</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lima Mendez, G" uniqKey="Lima Mendez G">G Lima-Mendez</name></author><author><name sortKey="Van Helden, J" uniqKey="Van Helden J">J Van Helden</name></author><author><name sortKey="Toussaint, A" uniqKey="Toussaint A">A Toussaint</name></author><author><name sortKey="Leplae, R" uniqKey="Leplae R">R Leplae</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marcais, G" uniqKey="Marcais G">G Marçais</name></author><author><name sortKey="Kingsford, C" uniqKey="Kingsford C">C Kingsford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marston, Mf" uniqKey="Marston M">MF Marston</name></author><author><name sortKey="Pierciey, Fj" uniqKey="Pierciey F">FJ Pierciey</name></author><author><name sortKey="Shepard, A" uniqKey="Shepard A">A Shepard</name></author><author><name sortKey="Gearin, G" uniqKey="Gearin G">G Gearin</name></author><author><name sortKey="Qi, J" uniqKey="Qi J">J Qi</name></author><author><name sortKey="Yandava, C" uniqKey="Yandava C">C Yandava</name></author><author><name sortKey="Schuster, Sc" uniqKey="Schuster S">SC Schuster</name></author><author><name sortKey="Henn, Mr" uniqKey="Henn M">MR Henn</name></author><author><name sortKey="Martiny, Jb" uniqKey="Martiny J">JB Martiny</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Middelboe, M" uniqKey="Middelboe M">M Middelboe</name></author><author><name sortKey="Holmfeldt, K" uniqKey="Holmfeldt K">K Holmfeldt</name></author><author><name sortKey="Riemann, L" uniqKey="Riemann L">L Riemann</name></author><author><name sortKey="Nybroe, O" uniqKey="Nybroe O">O Nybroe</name></author><author><name sortKey="Haaber, J" uniqKey="Haaber J">J Haaber</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Minot, S" uniqKey="Minot S">S Minot</name></author><author><name sortKey="Grunberg, S" uniqKey="Grunberg S">S Grunberg</name></author><author><name sortKey="Wu, Gd" uniqKey="Wu G">GD Wu</name></author><author><name sortKey="Lewis, Jd" uniqKey="Lewis J">JD Lewis</name></author><author><name sortKey="Bushman, Fd" uniqKey="Bushman F">FD Bushman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mizuno, Cm" uniqKey="Mizuno C">CM Mizuno</name></author><author><name sortKey="Rodriguez Valera, F" uniqKey="Rodriguez Valera F">F Rodriguez-Valera</name></author><author><name sortKey="Kimes, Ne" uniqKey="Kimes N">NE Kimes</name></author><author><name sortKey="Ghai, R" uniqKey="Ghai R">R Ghai</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mosig, G" uniqKey="Mosig G">G Mosig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pace, Nr" uniqKey="Pace N">NR Pace</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Peng, Y" uniqKey="Peng Y">Y Peng</name></author><author><name sortKey="Leung, Hc" uniqKey="Leung H">HC Leung</name></author><author><name sortKey="Yiu, Sm" uniqKey="Yiu S">SM Yiu</name></author><author><name sortKey="Chin, Fy" uniqKey="Chin F">FY Chin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pride, Dt" uniqKey="Pride D">DT Pride</name></author><author><name sortKey="Wassenaar, Tm" uniqKey="Wassenaar T">TM Wassenaar</name></author><author><name sortKey="Ghose, C" uniqKey="Ghose C">C Ghose</name></author><author><name sortKey="Blaser, Mj" uniqKey="Blaser M">MJ Blaser</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pruitt, Kd" uniqKey="Pruitt K">KD Pruitt</name></author><author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T Tatusova</name></author><author><name sortKey="Klimke, W" uniqKey="Klimke W">W Klimke</name></author><author><name sortKey="Maglott, Dr" uniqKey="Maglott D">DR Maglott</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rakonjac, J" uniqKey="Rakonjac J">J Rakonjac</name></author><author><name sortKey="Bennett, Nj" uniqKey="Bennett N">NJ Bennett</name></author><author><name sortKey="Spagnuolo, J" uniqKey="Spagnuolo J">J Spagnuolo</name></author><author><name sortKey="Gagic, D" uniqKey="Gagic D">D Gagic</name></author><author><name sortKey="Russel, M" uniqKey="Russel M">M Russel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rappe, Ms" uniqKey="Rappe M">MS Rappé</name></author><author><name sortKey="Giovannoni, Sj" uniqKey="Giovannoni S">SJ Giovannoni</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reyes, A" uniqKey="Reyes A">A Reyes</name></author><author><name sortKey="Semenkovich, Np" uniqKey="Semenkovich N">NP Semenkovich</name></author><author><name sortKey="Whiteson, K" uniqKey="Whiteson K">K Whiteson</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Gordon, Ji" uniqKey="Gordon J">JI Gordon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rice, P" uniqKey="Rice P">P Rice</name></author><author><name sortKey="Longden, I" uniqKey="Longden I">I Longden</name></author><author><name sortKey="Bleasby, A" uniqKey="Bleasby A">A Bleasby</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rinke, C" uniqKey="Rinke C">C Rinke</name></author><author><name sortKey="Schwientek, P" uniqKey="Schwientek P">P Schwientek</name></author><author><name sortKey="Sczyrba, A" uniqKey="Sczyrba A">A Sczyrba</name></author><author><name sortKey="Ivanova, Nn" uniqKey="Ivanova N">NN Ivanova</name></author><author><name sortKey="Anderson, Ij" uniqKey="Anderson I">IJ Anderson</name></author><author><name sortKey="Cheng, Jf" uniqKey="Cheng J">JF Cheng</name></author><author><name sortKey="Darling, A" uniqKey="Darling A">A Darling</name></author><author><name sortKey="Malfatti, S" uniqKey="Malfatti S">S Malfatti</name></author><author><name sortKey="Swan, Bk" uniqKey="Swan B">BK Swan</name></author><author><name sortKey="Gies, Ea" uniqKey="Gies E">EA Gies</name></author><author><name sortKey="Dodsworth, Ja" uniqKey="Dodsworth J">JA Dodsworth</name></author><author><name sortKey="Hedlund, Bp" uniqKey="Hedlund B">BP Hedlund</name></author><author><name sortKey="Tsiamis, G" uniqKey="Tsiamis G">G Tsiamis</name></author><author><name sortKey="Sievert, Sm" uniqKey="Sievert S">SM Sievert</name></author><author><name sortKey="Liu, Wt" uniqKey="Liu W">WT Liu</name></author><author><name sortKey="Eisen, Ja" uniqKey="Eisen J">JA Eisen</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Kyrpides, Nc" uniqKey="Kyrpides N">NC Kyrpides</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author><author><name sortKey="Rubin, Em" uniqKey="Rubin E">EM Rubin</name></author><author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name></author><author><name sortKey="Woyke, T" uniqKey="Woyke T">T Woyke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rodriguez Valera, F" uniqKey="Rodriguez Valera F">F Rodriguez-Valera</name></author><author><name sortKey="Martin Cuadrado, Ab" uniqKey="Martin Cuadrado A">AB Martin-Cuadrado</name></author><author><name sortKey="Rodriguez Brito, B" uniqKey="Rodriguez Brito B">B Rodriguez-Brito</name></author><author><name sortKey="Pasi, L" uniqKey="Pasi L">L Pasić</name></author><author><name sortKey="Thingstad, Tf" uniqKey="Thingstad T">TF Thingstad</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Mira, A" uniqKey="Mira A">A Mira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Edwards, R" uniqKey="Edwards R">R Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roux, S" uniqKey="Roux S">S Roux</name></author><author><name sortKey="Enault, F" uniqKey="Enault F">F Enault</name></author><author><name sortKey="Bronner, G" uniqKey="Bronner G">G Bronner</name></author><author><name sortKey="Vaulot, D" uniqKey="Vaulot D">D Vaulot</name></author><author><name sortKey="Forterre, P" uniqKey="Forterre P">P Forterre</name></author><author><name sortKey="Krupovic, M" uniqKey="Krupovic M">M Krupovic</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roux, S" uniqKey="Roux S">S Roux</name></author><author><name sortKey="Enault, F" uniqKey="Enault F">F Enault</name></author><author><name sortKey="Hurwitz, Bl" uniqKey="Hurwitz B">BL Hurwitz</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roux, S" uniqKey="Roux S">S Roux</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Woyke, T" uniqKey="Woyke T">T Woyke</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roux, S" uniqKey="Roux S">S Roux</name></author><author><name sortKey="Hawley, Ak" uniqKey="Hawley A">AK Hawley</name></author><author><name sortKey="Torres Beltran, M" uniqKey="Torres Beltran M">M Torres Beltran</name></author><author><name sortKey="Scofield, M" uniqKey="Scofield M">M Scofield</name></author><author><name sortKey="Schwientek, P" uniqKey="Schwientek P">P Schwientek</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author><author><name sortKey="Woyke, T" uniqKey="Woyke T">T Woyke</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saint Girons, I" uniqKey="Saint Girons I">I Saint Girons</name></author><author><name sortKey="Bourhy, P" uniqKey="Bourhy P">P Bourhy</name></author><author><name sortKey="Ottone, C" uniqKey="Ottone C">C Ottone</name></author><author><name sortKey="Picardeau, M" uniqKey="Picardeau M">M Picardeau</name></author><author><name sortKey="Yelton, D" uniqKey="Yelton D">D Yelton</name></author><author><name sortKey="Hendrix, Rw" uniqKey="Hendrix R">RW Hendrix</name></author><author><name sortKey="Glaser, P" uniqKey="Glaser P">P Glaser</name></author><author><name sortKey="Charon, N" uniqKey="Charon N">N Charon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Salim, O" uniqKey="Salim O">O Salim</name></author><author><name sortKey="Skilton, Rj" uniqKey="Skilton R">RJ Skilton</name></author><author><name sortKey="Lambden, Pr" uniqKey="Lambden P">PR Lambden</name></author><author><name sortKey="Fane, Ba" uniqKey="Fane B">BA Fane</name></author><author><name sortKey="Clarke, In" uniqKey="Clarke I">IN Clarke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sencilo, A" uniqKey="Sencilo A">A Sencilo</name></author><author><name sortKey="Paulin, L" uniqKey="Paulin L">L Paulin</name></author><author><name sortKey="Kellner, S" uniqKey="Kellner S">S Kellner</name></author><author><name sortKey="Helm, M" uniqKey="Helm M">M Helm</name></author><author><name sortKey="Roine, E" uniqKey="Roine E">E Roine</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sims, Ge" uniqKey="Sims G">GE Sims</name></author><author><name sortKey="Jun, Sr" uniqKey="Jun S">SR Jun</name></author><author><name sortKey="Wu, Ga" uniqKey="Wu G">GA Wu</name></author><author><name sortKey="Kim, Sh" uniqKey="Kim S">SH Kim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sternberg, N" uniqKey="Sternberg N">N Sternberg</name></author><author><name sortKey="Austin, S" uniqKey="Austin S">S Austin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sullivan, Mj" uniqKey="Sullivan M">MJ Sullivan</name></author><author><name sortKey="Petty, Nk" uniqKey="Petty N">NK Petty</name></author><author><name sortKey="Beatson, Sa" uniqKey="Beatson S">SA Beatson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Suttle, Ca" uniqKey="Suttle C">CA Suttle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tadmor, Ad" uniqKey="Tadmor A">AD Tadmor</name></author><author><name sortKey="Ottesen, Ea" uniqKey="Ottesen E">EA Ottesen</name></author><author><name sortKey="Leadbetter, Jr" uniqKey="Leadbetter J">JR Leadbetter</name></author><author><name sortKey="Phillips, R" uniqKey="Phillips R">R Phillips</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Weitz, Js" uniqKey="Weitz J">JS Weitz</name></author><author><name sortKey="Poisot, T" uniqKey="Poisot T">T Poisot</name></author><author><name sortKey="Meyer, Jr" uniqKey="Meyer J">JR Meyer</name></author><author><name sortKey="Flores, Co" uniqKey="Flores C">CO Flores</name></author><author><name sortKey="Valverde, S" uniqKey="Valverde S">S Valverde</name></author><author><name sortKey="Sullivan, Mb" uniqKey="Sullivan M">MB Sullivan</name></author><author><name sortKey="Hochberg, Me" uniqKey="Hochberg M">ME Hochberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Whitman, Wb" uniqKey="Whitman W">WB Whitman</name></author><author><name sortKey="Coleman, Dc" uniqKey="Coleman D">DC Coleman</name></author><author><name sortKey="Wiebe, Wj" uniqKey="Wiebe W">WJ Wiebe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wright, Jj" uniqKey="Wright J">JJ Wright</name></author><author><name sortKey="Konwar, Km" uniqKey="Konwar K">KM Konwar</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wrighton, K" uniqKey="Wrighton K">K Wrighton</name></author><author><name sortKey="Thomas, B" uniqKey="Thomas B">B Thomas</name></author><author><name sortKey="Sharon, I" uniqKey="Sharon I">I Sharon</name></author><author><name sortKey="Miller, Cs" uniqKey="Miller C">CS Miller</name></author><author><name sortKey="Castelle, Cj" uniqKey="Castelle C">CJ Castelle</name></author><author><name sortKey="Verberkmoes, Nc" uniqKey="Verberkmoes N">NC VerBerkmoes</name></author><author><name sortKey="Wilkins, Mj" uniqKey="Wilkins M">MJ Wilkins</name></author><author><name sortKey="Hettich, Rl" uniqKey="Hettich R">RL Hettich</name></author><author><name sortKey="Lipton, Ms" uniqKey="Lipton M">MS Lipton</name></author><author><name sortKey="Williams, Kh" uniqKey="Williams K">KH Williams</name></author><author><name sortKey="Long, Pe" uniqKey="Long P">PE Long</name></author><author><name sortKey="Banfield, Jf" uniqKey="Banfield J">JF Banfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yoon, Hs" uniqKey="Yoon H">HS Yoon</name></author><author><name sortKey="Price, Dc" uniqKey="Price D">DC Price</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author><author><name sortKey="Rajah, Vd" uniqKey="Rajah V">VD Rajah</name></author><author><name sortKey="Sieracki, Me" uniqKey="Sieracki M">ME Sieracki</name></author><author><name sortKey="Wilson, Wh" uniqKey="Wilson W">WH Wilson</name></author><author><name sortKey="Yang, Ec" uniqKey="Yang E">EC Yang</name></author><author><name sortKey="Duffy, S" uniqKey="Duffy S">S Duffy</name></author><author><name sortKey="Bhattacharya, D" uniqKey="Bhattacharya D">D Bhattacharya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Youle, M" uniqKey="Youle M">M Youle</name></author><author><name sortKey="Haynes, M" uniqKey="Haynes M">M Haynes</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, Y" uniqKey="Zhou Y">Y Zhou</name></author><author><name sortKey="Liang, Y" uniqKey="Liang Y">Y Liang</name></author><author><name sortKey="Lynch, Kh" uniqKey="Lynch K">KH Lynch</name></author><author><name sortKey="Dennis, Jj" uniqKey="Dennis J">JJ Dennis</name></author><author><name sortKey="Wishart, Ds" uniqKey="Wishart D">DS Wishart</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001217 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 001217 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Ticri/CIDE
|area= CyberinfraV1
|flux= Main
|étape= Merge
|type= RBID
|clé= PMC:4533152
|texte= Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:26200428" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \
| NlmPubMed2Wicri -a CyberinfraV1
| This area was generated with Dilib version V0.6.25. |  |