Biological Imaging Software Tools
Identifieur interne : 000525 ( Main/Exploration ); précédent : 000524; suivant : 000526Biological Imaging Software Tools
Auteurs : Kevin W. Eliceiri [États-Unis] ; Michael R. Berthold [Allemagne] ; Ilya G. Goldberg [États-Unis] ; Luis Ibá Ez [États-Unis] ; B. S. Manjunath [États-Unis] ; Maryann E. Martone [États-Unis] ; Robert F. Murphy [États-Unis] ; Hanchuan Peng ; Anne L. Plant [États-Unis] ; Badrinath Roysam ; Nico Stuurman [États-Unis] ; Jason R. Swedlow [Royaume-Uni] ; Pavel Tomancak [Allemagne] ; Anne E. Carpenter [États-Unis]Source :
- Nature methods [ 1548-7091 ] ; 2012.
Abstract
Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis, and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the challenges in that domain, and the overall status of available software for bioimage informatics, focusing on open source options.
Url:
DOI: 10.1038/nmeth.2084
PubMed: 22743775
PubMed Central: 3659807
Affiliations:
- Allemagne, Royaume-Uni, États-Unis
- Bade-Wurtemberg, Californie, District de Dresde, District de Fribourg-en-Brisgau, Maryland, Massachusetts, Pennsylvanie, Saxe (Land), Wisconsin, État de New York
- Constance (Allemagne), Dresde, Pittsburgh
- Université Carnegie-Mellon
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000434
- to stream Pmc, to step Curation: 000434
- to stream Pmc, to step Checkpoint: 000437
- to stream Ncbi, to step Merge: 000328
- to stream Ncbi, to step Curation: 000328
- to stream Ncbi, to step Checkpoint: 000328
- to stream Main, to step Merge: 000526
- to stream Main, to step Curation: 000525
Le document en format XML
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<front><div type="abstract" xml:lang="en"><p id="P1">Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis, and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the challenges in that domain, and the overall status of available software for bioimage informatics, focusing on open source options.</p>
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<name sortKey="Carpenter, Anne E" sort="Carpenter, Anne E" uniqKey="Carpenter A" first="Anne E." last="Carpenter">Anne E. Carpenter</name>
<name sortKey="Goldberg, Ilya G" sort="Goldberg, Ilya G" uniqKey="Goldberg I" first="Ilya G." last="Goldberg">Ilya G. Goldberg</name>
<name sortKey="Iba Ez, Luis" sort="Iba Ez, Luis" uniqKey="Iba Ez L" first="Luis" last="Ibá Ez">Luis Ibá Ez</name>
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<country name="Royaume-Uni"><noRegion><name sortKey="Swedlow, Jason R" sort="Swedlow, Jason R" uniqKey="Swedlow J" first="Jason R." last="Swedlow">Jason R. Swedlow</name>
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