Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
Identifieur interne : 000904 ( Main/Exploration ); précédent : 000903; suivant : 000905Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
Auteurs : Shulei Sun ; Jing Chen ; Weizhong Li ; Ilkay Altintas ; Abel Lin ; Steve Peltier ; Karen Stocks ; Eric E. Allen ; Mark Ellisman ; Jeffrey Grethe ; John WooleySource :
- Nucleic Acids Research [ 0305-1048 ] ; 2010.
English descriptors
- KwdEn :
- MESH :
Abstract
The Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA,
Url:
DOI: 10.1093/nar/gkq1102
PubMed: 21045053
PubMed Central: 3013694
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource</title><author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name></author><author><name sortKey="Chen, Jing" sort="Chen, Jing" uniqKey="Chen J" first="Jing" last="Chen">Jing Chen</name></author><author><name sortKey="Li, Weizhong" sort="Li, Weizhong" uniqKey="Li W" first="Weizhong" last="Li">Weizhong Li</name></author><author><name sortKey="Altintas, Ilkay" sort="Altintas, Ilkay" uniqKey="Altintas I" first="Ilkay" last="Altintas">Ilkay Altintas</name></author><author><name sortKey="Lin, Abel" sort="Lin, Abel" uniqKey="Lin A" first="Abel" last="Lin">Abel Lin</name></author><author><name sortKey="Peltier, Steve" sort="Peltier, Steve" uniqKey="Peltier S" first="Steve" last="Peltier">Steve Peltier</name></author><author><name sortKey="Stocks, Karen" sort="Stocks, Karen" uniqKey="Stocks K" first="Karen" last="Stocks">Karen Stocks</name></author><author><name sortKey="Allen, Eric E" sort="Allen, Eric E" uniqKey="Allen E" first="Eric E." last="Allen">Eric E. Allen</name></author><author><name sortKey="Ellisman, Mark" sort="Ellisman, Mark" uniqKey="Ellisman M" first="Mark" last="Ellisman">Mark Ellisman</name></author><author><name sortKey="Grethe, Jeffrey" sort="Grethe, Jeffrey" uniqKey="Grethe J" first="Jeffrey" last="Grethe">Jeffrey Grethe</name></author><author><name sortKey="Wooley, John" sort="Wooley, John" uniqKey="Wooley J" first="John" last="Wooley">John Wooley</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21045053</idno><idno type="pmc">3013694</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013694</idno><idno type="RBID">PMC:3013694</idno><idno type="doi">10.1093/nar/gkq1102</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000583</idno><idno type="wicri:Area/Pmc/Curation">000583</idno><idno type="wicri:Area/Pmc/Checkpoint">000591</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000058</idno><idno type="wicri:Area/PubMed/Curation">000058</idno><idno type="wicri:Area/PubMed/Checkpoint">000058</idno><idno type="wicri:Area/Ncbi/Merge">000172</idno><idno type="wicri:Area/Ncbi/Curation">000172</idno><idno type="wicri:Area/Ncbi/Checkpoint">000172</idno><idno type="wicri:doubleKey">0305-1048:2010:Sun S:community:cyberinfrastructure:for</idno><idno type="wicri:Area/Main/Merge">000907</idno><idno type="wicri:Area/Main/Curation">000904</idno><idno type="wicri:Area/Main/Exploration">000904</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource</title><author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name></author><author><name sortKey="Chen, Jing" sort="Chen, Jing" uniqKey="Chen J" first="Jing" last="Chen">Jing Chen</name></author><author><name sortKey="Li, Weizhong" sort="Li, Weizhong" uniqKey="Li W" first="Weizhong" last="Li">Weizhong Li</name></author><author><name sortKey="Altintas, Ilkay" sort="Altintas, Ilkay" uniqKey="Altintas I" first="Ilkay" last="Altintas">Ilkay Altintas</name></author><author><name sortKey="Lin, Abel" sort="Lin, Abel" uniqKey="Lin A" first="Abel" last="Lin">Abel Lin</name></author><author><name sortKey="Peltier, Steve" sort="Peltier, Steve" uniqKey="Peltier S" first="Steve" last="Peltier">Steve Peltier</name></author><author><name sortKey="Stocks, Karen" sort="Stocks, Karen" uniqKey="Stocks K" first="Karen" last="Stocks">Karen Stocks</name></author><author><name sortKey="Allen, Eric E" sort="Allen, Eric E" uniqKey="Allen E" first="Eric E." last="Allen">Eric E. Allen</name></author><author><name sortKey="Ellisman, Mark" sort="Ellisman, Mark" uniqKey="Ellisman M" first="Mark" last="Ellisman">Mark Ellisman</name></author><author><name sortKey="Grethe, Jeffrey" sort="Grethe, Jeffrey" uniqKey="Grethe J" first="Jeffrey" last="Grethe">Jeffrey Grethe</name></author><author><name sortKey="Wooley, John" sort="Wooley, John" uniqKey="Wooley J" first="John" last="Wooley">John Wooley</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Genetic</term><term>Environment</term><term>Metagenome</term><term>Metagenomics</term><term>Software</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Environment</term><term>Metagenome</term><term>Metagenomics</term><term>Software</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA, <ext-link ext-link-type="uri" xlink:href="http://camera.calit2.net/">http://camera.calit2.net/</ext-link>) is a database and associated computational infrastructure that provides a single system for depositing, locating, analyzing, visualizing and sharing data about microbial biology through an advanced web-based analysis portal. CAMERA collects and links metadata relevant to environmental metagenome data sets with annotation in a semantically-aware environment allowing users to write expressive semantic queries against the database. To meet the needs of the research community, users are able to query metadata categories such as habitat, sample type, time, location and other environmental physicochemical parameters. CAMERA is compliant with the standards promulgated by the Genomic Standards Consortium (GSC), and sustains a role within the GSC in extending standards for content and format of the metagenomic data and metadata and its submission to the CAMERA repository. To ensure wide, ready access to data and annotation, CAMERA also provides data submission tools to allow researchers to share and forward data to other metagenomics sites and community data archives such as GenBank. It has multiple interfaces for easy submission of large or complex data sets, and supports pre-registration of samples for sequencing. CAMERA integrates a growing list of tools and viewers for querying, analyzing, annotating and comparing metagenome and genome data.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Handelsman, J" uniqKey="Handelsman J">J Handelsman</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author><author><name sortKey="Alvarez Cohen, L" uniqKey="Alvarez Cohen L">L Alvarez-Cohen</name></author><author><name sortKey="Ashburner, M" uniqKey="Ashburner M">M Ashburner</name></author><author><name sortKey="Cann, Iko" uniqKey="Cann I">IKO Cann</name></author><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF Delong</name></author><author><name sortKey="Doolittle, Wf" uniqKey="Doolittle W">WF Doolittle</name></author><author><name sortKey="Fraser Liggett, Cm" uniqKey="Fraser Liggett C">CM Fraser-Liggett</name></author><author><name sortKey="Godzik, A" uniqKey="Godzik A">A Godzik</name></author><author><name 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uniqKey="Peplies J">J Peplies</name></author><author><name sortKey="Glockner, Fo" uniqKey="Glockner F">FO Glöckner</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Allen, Eric E" sort="Allen, Eric E" uniqKey="Allen E" first="Eric E." last="Allen">Eric E. Allen</name><name sortKey="Altintas, Ilkay" sort="Altintas, Ilkay" uniqKey="Altintas I" first="Ilkay" last="Altintas">Ilkay Altintas</name><name sortKey="Chen, Jing" sort="Chen, Jing" uniqKey="Chen J" first="Jing" last="Chen">Jing Chen</name><name sortKey="Ellisman, Mark" sort="Ellisman, Mark" uniqKey="Ellisman M" first="Mark" last="Ellisman">Mark Ellisman</name><name sortKey="Grethe, Jeffrey" sort="Grethe, Jeffrey" uniqKey="Grethe J" first="Jeffrey" last="Grethe">Jeffrey Grethe</name><name sortKey="Li, Weizhong" sort="Li, Weizhong" uniqKey="Li W" first="Weizhong" last="Li">Weizhong Li</name><name sortKey="Lin, Abel" sort="Lin, Abel" uniqKey="Lin A" first="Abel" last="Lin">Abel Lin</name><name sortKey="Peltier, Steve" sort="Peltier, Steve" uniqKey="Peltier S" first="Steve" last="Peltier">Steve Peltier</name><name sortKey="Stocks, Karen" sort="Stocks, Karen" uniqKey="Stocks K" first="Karen" last="Stocks">Karen Stocks</name><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name><name sortKey="Wooley, John" sort="Wooley, John" uniqKey="Wooley J" first="John" last="Wooley">John Wooley</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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