Mining Biological Pathways Using WikiPathways Web Services
Identifieur interne : 000B93 ( Main/Exploration ); précédent : 000B92; suivant : 000B94Mining Biological Pathways Using WikiPathways Web Services
Auteurs : Thomas Kelder [Pays-Bas] ; Alexander R. Pico [États-Unis] ; Kristina Hanspers [États-Unis] ; Martijn P. Van Iersel [Pays-Bas] ; Chris Evelo [Pays-Bas] ; Bruce R. Conklin [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2009.
Abstract
WikiPathways is a platform for creating, updating, and sharing biological pathways
Url:
DOI: 10.1371/journal.pone.0006447
PubMed: 19649250
PubMed Central: 2714472
Affiliations:
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Pico</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Gladstone Institute of Cardiovascular Disease, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Gladstone Institute of Cardiovascular Disease, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Hanspers, Kristina" sort="Hanspers, Kristina" uniqKey="Hanspers K" first="Kristina" last="Hanspers">Kristina Hanspers</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Gladstone Institute of Cardiovascular Disease, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Gladstone Institute of Cardiovascular Disease, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Van Iersel, Martijn P" sort="Van Iersel, Martijn P" uniqKey="Van Iersel M" first="Martijn P." last="Van Iersel">Martijn P. Van Iersel</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht</wicri:regionArea><wicri:noRegion>Maastricht</wicri:noRegion></affiliation></author><author><name sortKey="Evelo, Chris" sort="Evelo, Chris" uniqKey="Evelo C" first="Chris" last="Evelo">Chris Evelo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht</wicri:regionArea><wicri:noRegion>Maastricht</wicri:noRegion></affiliation></author><author><name sortKey="Conklin, Bruce R" sort="Conklin, Bruce R" uniqKey="Conklin B" first="Bruce R." last="Conklin">Bruce R. Conklin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Gladstone Institute of Cardiovascular Disease, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Gladstone Institute of Cardiovascular Disease, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Departments of Medicine, and Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>WikiPathways is a platform for creating, updating, and sharing biological pathways <xref ref-type="bibr" rid="pone.0006447-Pico1">[1]</xref>. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the functionality that this web service offers and discuss several use cases in detail. Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Pico, Ar" uniqKey="Pico A">AR Pico</name></author><author><name sortKey="Kelder, T" uniqKey="Kelder T">T Kelder</name></author><author><name sortKey="Van Iersel, Mp" uniqKey="Van Iersel M">MP van Iersel</name></author><author><name sortKey="Hanspers, K" uniqKey="Hanspers K">K Hanspers</name></author><author><name sortKey="Conklin, Br" uniqKey="Conklin B">BR Conklin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Iersel, Mp" uniqKey="Van Iersel M">MP van Iersel</name></author><author><name sortKey="Kelder, T" uniqKey="Kelder T">T Kelder</name></author><author><name sortKey="Pico, Ar" uniqKey="Pico A">AR Pico</name></author><author><name sortKey="Hanspers, K" uniqKey="Hanspers K">K Hanspers</name></author><author><name sortKey="Coort, S" uniqKey="Coort S">S Coort</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kanehisa, M" uniqKey="Kanehisa M">M Kanehisa</name></author><author><name sortKey="Goto, S" uniqKey="Goto S">S Goto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matthews, L" uniqKey="Matthews L">L Matthews</name></author><author><name sortKey="Gopinath, G" uniqKey="Gopinath G">G Gopinath</name></author><author><name sortKey="Gillespie, M" uniqKey="Gillespie M">M Gillespie</name></author><author><name sortKey="Caudy, M" uniqKey="Caudy M">M Caudy</name></author><author><name sortKey="Croft, D" uniqKey="Croft D">D Croft</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Huss, Jw" uniqKey="Huss J">JW Huss</name></author><author><name sortKey="Orozco, C" uniqKey="Orozco C">C 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Lawlor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nam, D" uniqKey="Nam D">D Nam</name></author><author><name sortKey="Kim, S Y" uniqKey="Kim S">S-Y Kim</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Pays-Bas</li><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="Pays-Bas"><noRegion><name sortKey="Kelder, Thomas" sort="Kelder, Thomas" uniqKey="Kelder T" first="Thomas" last="Kelder">Thomas Kelder</name></noRegion><name sortKey="Evelo, Chris" sort="Evelo, Chris" uniqKey="Evelo C" first="Chris" last="Evelo">Chris Evelo</name><name sortKey="Van Iersel, Martijn P" sort="Van Iersel, Martijn P" uniqKey="Van Iersel M" first="Martijn P." last="Van Iersel">Martijn P. Van Iersel</name></country><country name="États-Unis"><region name="Californie"><name sortKey="Pico, Alexander R" sort="Pico, Alexander R" uniqKey="Pico A" first="Alexander R." last="Pico">Alexander R. Pico</name></region><name sortKey="Conklin, Bruce R" sort="Conklin, Bruce R" uniqKey="Conklin B" first="Bruce R." last="Conklin">Bruce R. Conklin</name><name sortKey="Conklin, Bruce R" sort="Conklin, Bruce R" uniqKey="Conklin B" first="Bruce R." last="Conklin">Bruce R. Conklin</name><name sortKey="Hanspers, Kristina" sort="Hanspers, Kristina" uniqKey="Hanspers K" first="Kristina" last="Hanspers">Kristina Hanspers</name><name sortKey="Hanspers, Kristina" sort="Hanspers, Kristina" uniqKey="Hanspers K" first="Kristina" last="Hanspers">Kristina Hanspers</name><name sortKey="Pico, Alexander R" sort="Pico, Alexander R" uniqKey="Pico A" first="Alexander R." last="Pico">Alexander R. Pico</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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