TCW: Transcriptome Computational Workbench
Identifieur interne : 000283 ( Main/Curation ); précédent : 000282; suivant : 000284TCW: Transcriptome Computational Workbench
Auteurs : Carol Soderlund [États-Unis] ; William Nelson [États-Unis] ; Mark Willer [États-Unis] ; David R. Gang [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The analysis of transcriptome data involves many steps and various programs, along with organization of large amounts of data and results. Without a methodical approach for storage, analysis and query, the resulting ad hoc analysis can lead to human error, loss of data and results, inefficient use of time, and lack of verifiability, repeatability, and extensibility.
The Transcriptome Computational Workbench (TCW) provides Java graphical interfaces for methodical analysis for both single and comparative transcriptome data without the use of a reference genome (e.g. for non-model organisms). The singleTCW interface steps the user through importing transcript sequences (e.g. Illumina) or assembling long sequences (e.g. Sanger, 454, transcripts), annotating the sequences, and performing differential expression analysis using published statistical programs in R. The data, metadata, and results are stored in a MySQL database. The multiTCW interface builds a comparison database by importing sequence and annotation from one or more single TCW databases, executes the ESTscan program to translate the sequences into proteins, and then incorporates one or more clusterings, where the clustering options are to execute the orthoMCL program, compute transitive closure, or import clusters. Both singleTCW and multiTCW allow extensive query and display of the results, where singleTCW displays the alignment of annotation hits to transcript sequences, and multiTCW displays multiple transcript alignments with MUSCLE or pairwise alignments. The query programs can be executed on the desktop for fastest analysis, or from the web for sharing the results.
It is now affordable to buy a multi-processor machine, and easy to install Java and MySQL. By simply downloading the TCW, the user can interactively analyze, query and view their data. The TCW allows in-depth data mining of the results, which can lead to a better understanding of the transcriptome. TCW is freely available from
Url:
DOI: 10.1371/journal.pone.0069401
PubMed: 23874959
PubMed Central: 3714256
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000622
- to stream Pmc, to step Curation: Pour aller vers cette notice dans l'étape Curation :000622
- to stream Pmc, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000261
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000426
- to stream Ncbi, to step Curation: Pour aller vers cette notice dans l'étape Curation :000426
- to stream Ncbi, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000426
- to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :000283
Links to Exploration step
PMC:3714256Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">TCW: Transcriptome Computational Workbench</title>
<author><name sortKey="Soderlund, Carol" sort="Soderlund, Carol" uniqKey="Soderlund C" first="Carol" last="Soderlund">Carol Soderlund</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Nelson, William" sort="Nelson, William" uniqKey="Nelson W" first="William" last="Nelson">William Nelson</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Willer, Mark" sort="Willer, Mark" uniqKey="Willer M" first="Mark" last="Willer">Mark Willer</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Gang, David R" sort="Gang, David R" uniqKey="Gang D" first="David R." last="Gang">David R. Gang</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Washington State University, Pullman, Washington, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Washington State University, Pullman, Washington</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">23874959</idno>
<idno type="pmc">3714256</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3714256</idno>
<idno type="RBID">PMC:3714256</idno>
<idno type="doi">10.1371/journal.pone.0069401</idno>
<date when="2013">2013</date>
<idno type="wicri:Area/Pmc/Corpus">000622</idno>
<idno type="wicri:Area/Pmc/Curation">000622</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000261</idno>
<idno type="wicri:Area/Ncbi/Merge">000426</idno>
<idno type="wicri:Area/Ncbi/Curation">000426</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000426</idno>
<idno type="wicri:Area/Main/Merge">000283</idno>
<idno type="wicri:Area/Main/Curation">000283</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">TCW: Transcriptome Computational Workbench</title>
<author><name sortKey="Soderlund, Carol" sort="Soderlund, Carol" uniqKey="Soderlund C" first="Carol" last="Soderlund">Carol Soderlund</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Nelson, William" sort="Nelson, William" uniqKey="Nelson W" first="William" last="Nelson">William Nelson</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Willer, Mark" sort="Willer, Mark" uniqKey="Willer M" first="Mark" last="Willer">Mark Willer</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>BIO5 Institute, University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName><region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Gang, David R" sort="Gang, David R" uniqKey="Gang D" first="David R." last="Gang">David R. Gang</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Washington State University, Pullman, Washington, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Washington State University, Pullman, Washington</wicri:regionArea>
<placeName><region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2013">2013</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>The analysis of transcriptome data involves many steps and various programs, along with organization of large amounts of data and results. Without a methodical approach for storage, analysis and query, the resulting ad hoc analysis can lead to human error, loss of data and results, inefficient use of time, and lack of verifiability, repeatability, and extensibility.</p>
</sec>
<sec><title>Methodology</title>
<p>The Transcriptome Computational Workbench (TCW) provides Java graphical interfaces for methodical analysis for both single and comparative transcriptome data without the use of a reference genome (e.g. for non-model organisms). The singleTCW interface steps the user through importing transcript sequences (e.g. Illumina) or assembling long sequences (e.g. Sanger, 454, transcripts), annotating the sequences, and performing differential expression analysis using published statistical programs in R. The data, metadata, and results are stored in a MySQL database. The multiTCW interface builds a comparison database by importing sequence and annotation from one or more single TCW databases, executes the ESTscan program to translate the sequences into proteins, and then incorporates one or more clusterings, where the clustering options are to execute the orthoMCL program, compute transitive closure, or import clusters. Both singleTCW and multiTCW allow extensive query and display of the results, where singleTCW displays the alignment of annotation hits to transcript sequences, and multiTCW displays multiple transcript alignments with MUSCLE or pairwise alignments. The query programs can be executed on the desktop for fastest analysis, or from the web for sharing the results.</p>
</sec>
<sec><title>Conclusion</title>
<p>It is now affordable to buy a multi-processor machine, and easy to install Java and MySQL. By simply downloading the TCW, the user can interactively analyze, query and view their data. The TCW allows in-depth data mining of the results, which can lead to a better understanding of the transcriptome. TCW is freely available from <ext-link ext-link-type="uri" xlink:href="http://www.agcol.arizona.edu/software/tcw">www.agcol.arizona.edu/software/tcw</ext-link>
.</p>
</sec>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="The Go, Consortium" uniqKey="The Go C">Consortium The GO</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garber, M" uniqKey="Garber M">M Garber</name>
</author>
<author><name sortKey="Grabherr, Mg" uniqKey="Grabherr M">MG Grabherr</name>
</author>
<author><name sortKey="Guttman, M" uniqKey="Guttman M">M Guttman</name>
</author>
<author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C Trapnell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Conesa, A" uniqKey="Conesa A">A Conesa</name>
</author>
<author><name sortKey="Gotz, S" uniqKey="Gotz S">S Gotz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hunter, S" uniqKey="Hunter S">S Hunter</name>
</author>
<author><name sortKey="Jones, P" uniqKey="Jones P">P Jones</name>
</author>
<author><name sortKey="Mitchell, A" uniqKey="Mitchell A">A Mitchell</name>
</author>
<author><name sortKey="Apweiler, R" uniqKey="Apweiler R">R Apweiler</name>
</author>
<author><name sortKey="Attwood, Tk" uniqKey="Attwood T">TK Attwood</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lohse, M" uniqKey="Lohse M">M Lohse</name>
</author>
<author><name sortKey="Bolger, Am" uniqKey="Bolger A">AM Bolger</name>
</author>
<author><name sortKey="Nagel, A" uniqKey="Nagel A">A Nagel</name>
</author>
<author><name sortKey="Fernie, Ar" uniqKey="Fernie A">AR Fernie</name>
</author>
<author><name sortKey="Lunn, Je" uniqKey="Lunn J">JE Lunn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Robinson, Md" uniqKey="Robinson M">MD Robinson</name>
</author>
<author><name sortKey="Mccarthy, Dj" uniqKey="Mccarthy D">DJ McCarthy</name>
</author>
<author><name sortKey="Smyth, Gk" uniqKey="Smyth G">GK Smyth</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Anders, S" uniqKey="Anders S">S Anders</name>
</author>
<author><name sortKey="Huber, W" uniqKey="Huber W">W Huber</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Risso, D" uniqKey="Risso D">D Risso</name>
</author>
<author><name sortKey="Schwartz, K" uniqKey="Schwartz K">K Schwartz</name>
</author>
<author><name sortKey="Sherlock, G" uniqKey="Sherlock G">G Sherlock</name>
</author>
<author><name sortKey="Dudoit, S" uniqKey="Dudoit S">S Dudoit</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Langmead, B" uniqKey="Langmead B">B Langmead</name>
</author>
<author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C Trapnell</name>
</author>
<author><name sortKey="Pop, M" uniqKey="Pop M">M Pop</name>
</author>
<author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name>
</author>
<author><name sortKey="Feng, Z" uniqKey="Feng Z">Z Feng</name>
</author>
<author><name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
</author>
<author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Young, Md" uniqKey="Young M">MD Young</name>
</author>
<author><name sortKey="Wakefield, Mj" uniqKey="Wakefield M">MJ Wakefield</name>
</author>
<author><name sortKey="Smyth, Gk" uniqKey="Smyth G">GK Smyth</name>
</author>
<author><name sortKey="Oshlack, A" uniqKey="Oshlack A">A Oshlack</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Li, L" uniqKey="Li L">L Li</name>
</author>
<author><name sortKey="Stoeckert, Cj" uniqKey="Stoeckert C">CJ Stoeckert</name>
</author>
<author><name sortKey="Roos, Ds" uniqKey="Roos D">DS Roos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ostlund, G" uniqKey="Ostlund G">G Ostlund</name>
</author>
<author><name sortKey="Schmitt, T" uniqKey="Schmitt T">T Schmitt</name>
</author>
<author><name sortKey="Forslund, K" uniqKey="Forslund K">K Forslund</name>
</author>
<author><name sortKey="Kostler, T" uniqKey="Kostler T">T Kostler</name>
</author>
<author><name sortKey="Messina, Dn" uniqKey="Messina D">DN Messina</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Linard, B" uniqKey="Linard B">B Linard</name>
</author>
<author><name sortKey="Thompson, Jd" uniqKey="Thompson J">JD Thompson</name>
</author>
<author><name sortKey="Poch, O" uniqKey="Poch O">O Poch</name>
</author>
<author><name sortKey="Lecompte, O" uniqKey="Lecompte O">O Lecompte</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Howe, Ea" uniqKey="Howe E">EA Howe</name>
</author>
<author><name sortKey="Sinha, R" uniqKey="Sinha R">R Sinha</name>
</author>
<author><name sortKey="Schlauch, D" uniqKey="Schlauch D">D Schlauch</name>
</author>
<author><name sortKey="Quackenbush, J" uniqKey="Quackenbush J">J Quackenbush</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Giardine, B" uniqKey="Giardine B">B Giardine</name>
</author>
<author><name sortKey="Riemer, C" uniqKey="Riemer C">C Riemer</name>
</author>
<author><name sortKey="Hardison, Rc" uniqKey="Hardison R">RC Hardison</name>
</author>
<author><name sortKey="Burhans, R" uniqKey="Burhans R">R Burhans</name>
</author>
<author><name sortKey="Elnitski, L" uniqKey="Elnitski L">L Elnitski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Goff, Sa" uniqKey="Goff S">SA Goff</name>
</author>
<author><name sortKey="Vaughn, M" uniqKey="Vaughn M">M Vaughn</name>
</author>
<author><name sortKey="Mckay, S" uniqKey="Mckay S">S McKay</name>
</author>
<author><name sortKey="Lyons, E" uniqKey="Lyons E">E Lyons</name>
</author>
<author><name sortKey="Stapleton, Ae" uniqKey="Stapleton A">AE Stapleton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Goncalves, A" uniqKey="Goncalves A">A Goncalves</name>
</author>
<author><name sortKey="Tikhonov, A" uniqKey="Tikhonov A">A Tikhonov</name>
</author>
<author><name sortKey="Brazma, A" uniqKey="Brazma A">A Brazma</name>
</author>
<author><name sortKey="Kapushesky, M" uniqKey="Kapushesky M">M Kapushesky</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Langmead, B" uniqKey="Langmead B">B Langmead</name>
</author>
<author><name sortKey="Hansen, Kd" uniqKey="Hansen K">KD Hansen</name>
</author>
<author><name sortKey="Leek, Jt" uniqKey="Leek J">JT Leek</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Soderlund, C" uniqKey="Soderlund C">C Soderlund</name>
</author>
<author><name sortKey="Johnson, E" uniqKey="Johnson E">E Johnson</name>
</author>
<author><name sortKey="Bomhoff, M" uniqKey="Bomhoff M">M Bomhoff</name>
</author>
<author><name sortKey="Descour, A" uniqKey="Descour A">A Descour</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="He, R" uniqKey="He R">R He</name>
</author>
<author><name sortKey="Kim, Mj" uniqKey="Kim M">MJ Kim</name>
</author>
<author><name sortKey="Nelson, W" uniqKey="Nelson W">W Nelson</name>
</author>
<author><name sortKey="Balbuena, Ts" uniqKey="Balbuena T">TS Balbuena</name>
</author>
<author><name sortKey="Kim, R" uniqKey="Kim R">R Kim</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Huang, X" uniqKey="Huang X">X Huang</name>
</author>
<author><name sortKey="Madan, A" uniqKey="Madan A">A Madan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dimmer, Ec" uniqKey="Dimmer E">EC Dimmer</name>
</author>
<author><name sortKey="Huntley, Rp" uniqKey="Huntley R">RP Huntley</name>
</author>
<author><name sortKey="Alam Faruque, Y" uniqKey="Alam Faruque Y">Y Alam-Faruque</name>
</author>
<author><name sortKey="Sawford, T" uniqKey="Sawford T">T Sawford</name>
</author>
<author><name sortKey="O Onovan, C" uniqKey="O Onovan C">C O’Donovan</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Bairoch, A" uniqKey="Bairoch A">A Bairoch</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Punta, M" uniqKey="Punta M">M Punta</name>
</author>
<author><name sortKey="Coggill, Pc" uniqKey="Coggill P">PC Coggill</name>
</author>
<author><name sortKey="Eberhardt, Ry" uniqKey="Eberhardt R">RY Eberhardt</name>
</author>
<author><name sortKey="Mistry, J" uniqKey="Mistry J">J Mistry</name>
</author>
<author><name sortKey="Tate, J" uniqKey="Tate J">J Tate</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mortazavi, A" uniqKey="Mortazavi A">A Mortazavi</name>
</author>
<author><name sortKey="Williams, Ba" uniqKey="Williams B">BA Williams</name>
</author>
<author><name sortKey="Mccue, K" uniqKey="Mccue K">K McCue</name>
</author>
<author><name sortKey="Schaeffer, L" uniqKey="Schaeffer L">L Schaeffer</name>
</author>
<author><name sortKey="Wold, B" uniqKey="Wold B">B Wold</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stekel, Dj" uniqKey="Stekel D">DJ Stekel</name>
</author>
<author><name sortKey="Git, Y" uniqKey="Git Y">Y Git</name>
</author>
<author><name sortKey="Falciani, F" uniqKey="Falciani F">F Falciani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hardcastle, Tj" uniqKey="Hardcastle T">TJ Hardcastle</name>
</author>
<author><name sortKey="Kelly, Ka" uniqKey="Kelly K">KA Kelly</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smedley, D" uniqKey="Smedley D">D Smedley</name>
</author>
<author><name sortKey="Haider, S" uniqKey="Haider S">S Haider</name>
</author>
<author><name sortKey="Ballester, B" uniqKey="Ballester B">B Ballester</name>
</author>
<author><name sortKey="Holland, R" uniqKey="Holland R">R Holland</name>
</author>
<author><name sortKey="London, D" uniqKey="London D">D London</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rhee, Sy" uniqKey="Rhee S">SY Rhee</name>
</author>
<author><name sortKey="Wood, V" uniqKey="Wood V">V Wood</name>
</author>
<author><name sortKey="Dolinski, K" uniqKey="Dolinski K">K Dolinski</name>
</author>
<author><name sortKey="Draghici, S" uniqKey="Draghici S">S Draghici</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gentleman, Rc" uniqKey="Gentleman R">RC Gentleman</name>
</author>
<author><name sortKey="Carey, Vj" uniqKey="Carey V">VJ Carey</name>
</author>
<author><name sortKey="Bates, Dm" uniqKey="Bates D">DM Bates</name>
</author>
<author><name sortKey="Bolstad, B" uniqKey="Bolstad B">B Bolstad</name>
</author>
<author><name sortKey="Dettling, M" uniqKey="Dettling M">M Dettling</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zhang, H" uniqKey="Zhang H">H Zhang</name>
</author>
<author><name sortKey="Jin, J" uniqKey="Jin J">J Jin</name>
</author>
<author><name sortKey="Tang, L" uniqKey="Tang L">L Tang</name>
</author>
<author><name sortKey="Zhao, Y" uniqKey="Zhao Y">Y Zhao</name>
</author>
<author><name sortKey="Gu, X" uniqKey="Gu X">X Gu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sarachu, M" uniqKey="Sarachu M">M Sarachu</name>
</author>
<author><name sortKey="Colet, M" uniqKey="Colet M">M Colet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zheng, Y" uniqKey="Zheng Y">Y Zheng</name>
</author>
<author><name sortKey="Zhao, L" uniqKey="Zhao L">L Zhao</name>
</author>
<author><name sortKey="Gao, J" uniqKey="Gao J">J Gao</name>
</author>
<author><name sortKey="Fei, Z" uniqKey="Fei Z">Z Fei</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Darling, Ac" uniqKey="Darling A">AC Darling</name>
</author>
<author><name sortKey="Mau, B" uniqKey="Mau B">B Mau</name>
</author>
<author><name sortKey="Blattner, Fr" uniqKey="Blattner F">FR Blattner</name>
</author>
<author><name sortKey="Perna, Nt" uniqKey="Perna N">NT Perna</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Soderlund, C" uniqKey="Soderlund C">C Soderlund</name>
</author>
<author><name sortKey="Bomhoff, M" uniqKey="Bomhoff M">M Bomhoff</name>
</author>
<author><name sortKey="Nelson, Wm" uniqKey="Nelson W">WM Nelson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Theocharidis, A" uniqKey="Theocharidis A">A Theocharidis</name>
</author>
<author><name sortKey="Van Dongen, S" uniqKey="Van Dongen S">S van Dongen</name>
</author>
<author><name sortKey="Enright, Aj" uniqKey="Enright A">AJ Enright</name>
</author>
<author><name sortKey="Freeman, Tc" uniqKey="Freeman T">TC Freeman</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000283 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000283 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= CyberinfraV1 |flux= Main |étape= Curation |type= RBID |clé= PMC:3714256 |texte= TCW: Transcriptome Computational Workbench }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:23874959" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \ | NlmPubMed2Wicri -a CyberinfraV1
This area was generated with Dilib version V0.6.25. |