Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis
Identifieur interne : 000604 ( Istex/Corpus ); précédent : 000603; suivant : 000605Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis
Auteurs : Jan Šev K ; David Kasp K ; Andrea T ThováSource :
- Systematic Entomology [ 0307-6970 ] ; 2013-10.
Abstract
The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.
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DOI: 10.1111/syen.12023
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<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title><author><name sortKey="Sev K, Jan" sort="Sev K, Jan" uniqKey="Sev K J" first="Jan" last="Šev K">Jan Šev K</name><affiliation><mods:affiliation>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</mods:affiliation></affiliation></author><author><name sortKey="Kasp K, David" sort="Kasp K, David" uniqKey="Kasp K D" first="David" last="Kasp K">David Kasp K</name><affiliation><mods:affiliation>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</mods:affiliation></affiliation></author><author><name sortKey="T Thova, Andrea" sort="T Thova, Andrea" uniqKey="T Thova A" first="Andrea" last="T Thová">Andrea T Thová</name><affiliation><mods:affiliation>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</mods:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0</idno><date when="2013" year="2013">2013</date><idno type="doi">10.1111/syen.12023</idno><idno type="url">https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/fulltext/pdf</idno><idno type="wicri:Area/Istex/Corpus">000604</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title><author><name sortKey="Sev K, Jan" sort="Sev K, Jan" uniqKey="Sev K J" first="Jan" last="Šev K">Jan Šev K</name><affiliation><mods:affiliation>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</mods:affiliation></affiliation></author><author><name sortKey="Kasp K, David" sort="Kasp K, David" uniqKey="Kasp K D" first="David" last="Kasp K">David Kasp K</name><affiliation><mods:affiliation>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</mods:affiliation></affiliation></author><author><name sortKey="T Thova, Andrea" sort="T Thova, Andrea" uniqKey="T Thova A" first="Andrea" last="T Thová">Andrea T Thová</name><affiliation><mods:affiliation>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Systematic Entomology</title><title level="j" type="abbrev">Syst Entomol</title><idno type="ISSN">0307-6970</idno><idno type="eISSN">1365-3113</idno><imprint><publisher>Blackwell Publishing Ltd</publisher><pubPlace>Oxford, UK</pubPlace><date type="published" when="2013-10">2013-10</date><biblScope unit="volume">38</biblScope><biblScope unit="issue">4</biblScope><biblScope unit="page" from="654">654</biblScope><biblScope unit="page" to="660">660</biblScope></imprint><idno type="ISSN">0307-6970</idno></series><idno type="istex">BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0</idno><idno type="DOI">10.1111/syen.12023</idno><idno type="ArticleID">SYEN12023</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0307-6970</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract">The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</div></front></TEI><istex><corpusName>wiley</corpusName><author><json:item><name>JAN ŠEVČÍK</name><affiliations><json:string>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</json:string></affiliations></json:item><json:item><name>DAVID KASPŘÁK</name><affiliations><json:string>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</json:string></affiliations></json:item><json:item><name>ANDREA TÓTHOVÁ</name><affiliations><json:string>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</json:string></affiliations></json:item></author><articleId><json:string>SYEN12023</json:string></articleId><language><json:string>eng</json:string></language><originalGenre><json:string>article</json:string></originalGenre><abstract>The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</abstract><qualityIndicators><score>6.405</score><pdfVersion>1.3</pdfVersion><pdfPageSize>595.276 x 790.866 pts</pdfPageSize><refBibsNative>true</refBibsNative><keywordCount>0</keywordCount><abstractCharCount>1051</abstractCharCount><pdfWordCount>4605</pdfWordCount><pdfCharCount>29500</pdfCharCount><pdfPageCount>7</pdfPageCount><abstractWordCount>150</abstractWordCount></qualityIndicators><title>Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title><genre><json:string>article</json:string></genre><host><volume>38</volume><publisherId><json:string>SYEN</json:string></publisherId><pages><total>7</total><last>660</last><first>654</first></pages><issn><json:string>0307-6970</json:string></issn><issue>4</issue><subject><json:item><value>Original Article</value></json:item></subject><genre><json:string>journal</json:string></genre><language><json:string>unknown</json:string></language><eissn><json:string>1365-3113</json:string></eissn><title>Systematic Entomology</title><doi><json:string>10.1111/(ISSN)1365-3113</json:string></doi></host><publicationDate>2013</publicationDate><copyrightDate>2013</copyrightDate><doi><json:string>10.1111/syen.12023</json:string></doi><id>BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0</id><score>0.11838593</score><fulltext><json:item><original>true</original><mimetype>application/pdf</mimetype><extension>pdf</extension><uri>https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/fulltext/pdf</uri></json:item><json:item><original>false</original><mimetype>application/zip</mimetype><extension>zip</extension><uri>https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/fulltext/zip</uri></json:item><istex:fulltextTEI uri="https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/fulltext/tei"><teiHeader><fileDesc><titleStmt><title level="a" type="main" xml:lang="en">Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title></titleStmt><publicationStmt><authority>ISTEX</authority><publisher>Blackwell Publishing Ltd</publisher><pubPlace>Oxford, UK</pubPlace><availability><p>© 2013 The Royal Entomological Society© 2013 The Royal Entomological Society</p></availability><date>2013-05-28</date></publicationStmt><notesStmt><note>Table S1. List of fungus gnat specimens used for DNA extraction, with specimen identification number and GenBank accession numbers. More information about the specimens is listed in the supporting information. All the specimens are males.Table S2. List of additional taxa and sequences used in the extended dataset for Bayesian analysis of Mycetophilidae, with GenBank accession numbers.Table S3. List of primers used for sequencing 12S ribosomal RNA, 16S ribosomal RNA, 28S ribosomal RNA, cytochrome oxidase subunit I (COI) and subunit II (COII), cytochrome b (Cytb) and internal transcribed spacer 2 (ITS2).Table S4. List of specimens included in the phylogenetic analysis.Figure S1. Bayesian hypothesis for Mycetophilidae relationships based on DNA sequence data, including additional data from GenBank. Values of posterior probability (PP) over 0.5 are given above node numbers. The long branch leading to Paramanota has been shortened by half to fit it into the graphic. The image is of Manota unifurcata (Lundström), a representative of the Manotinae.</note><note>Life Science Research Centre at the University of Ostrava</note><note>Silesian Museum in Opava (Czech Republic) - No. IGS201103;</note><note>U.S. National Science Foundation - No. DEB‐0542864;</note><note>National Research Council of Thailand</note><note>Department of National Parks, Wildlife and Plant Conservation, Thailand</note><note>CIPRES</note></notesStmt><sourceDesc><biblStruct type="inbook"><analytic><title level="a" type="main" xml:lang="en">Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title><author xml:id="author-1"><persName><forename type="first">JAN</forename><surname>ŠEVČÍK</surname></persName><note type="correspondence"><p>Correspondence: Jan Ševčík, Department of Biology and Ecology, University of Ostrava, Chittussiho 10, CZ‐710 00 Ostrava & Silesian Museum, Tyršova 1, CZ‐746 01 Opava, Czech Republic. E‐mail:</p></note><affiliation>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</affiliation></author><author xml:id="author-2"><persName><forename type="first">DAVID</forename><surname>KASPŘÁK</surname></persName><affiliation>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</affiliation></author><author xml:id="author-3"><persName><forename type="first">ANDREA</forename><surname>TÓTHOVÁ</surname></persName><affiliation>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</affiliation></author></analytic><monogr><title level="j">Systematic Entomology</title><title level="j" type="abbrev">Syst Entomol</title><idno type="pISSN">0307-6970</idno><idno type="eISSN">1365-3113</idno><idno type="DOI">10.1111/(ISSN)1365-3113</idno><imprint><publisher>Blackwell Publishing Ltd</publisher><pubPlace>Oxford, UK</pubPlace><date type="published" when="2013-10"></date><biblScope unit="volume">38</biblScope><biblScope unit="issue">4</biblScope><biblScope unit="page" from="654">654</biblScope><biblScope unit="page" to="660">660</biblScope></imprint></monogr><idno type="istex">BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0</idno><idno type="DOI">10.1111/syen.12023</idno><idno type="ArticleID">SYEN12023</idno></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>2013-05-28</date></creation><langUsage><language ident="en">en</language></langUsage><abstract><p>The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</p></abstract><textClass><keywords scheme="Journal Subject"><list><head>article-category</head><item><term>Original Article</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="2013-04-03">Registration</change><change when="2013-05-28">Created</change><change when="2013-10">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><original>false</original><mimetype>text/plain</mimetype><extension>txt</extension><uri>https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/fulltext/txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Wiley, elements deleted: body"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" standalone="yes"</istex:xmlDeclaration><istex:document><component type="serialArticle" version="2.0" xml:lang="en" xml:id="syen12023"><header><publicationMeta level="product"><publisherInfo><publisherName>Blackwell Publishing Ltd</publisherName><publisherLoc>Oxford, UK</publisherLoc></publisherInfo><doi>10.1111/(ISSN)1365-3113</doi><issn type="print">0307-6970</issn><issn type="electronic">1365-3113</issn><idGroup><id type="product" value="SYEN"></id></idGroup><titleGroup><title type="main" sort="SYSTEMATIC ENTOMOLOGY">Systematic Entomology</title><title type="short">Syst Entomol</title></titleGroup></publicationMeta><publicationMeta level="part" position="10104"><doi origin="wiley">10.1111/syen.2013.38.issue-4</doi><copyright ownership="thirdParty">© 2013 The Royal Entomological Society</copyright><numberingGroup><numbering type="journalVolume" number="38">38</numbering><numbering type="journalIssue">4</numbering></numberingGroup><coverDate startDate="2013-10">October 2013</coverDate></publicationMeta><publicationMeta level="unit" position="20" type="article" status="forIssue"><doi>10.1111/syen.12023</doi><idGroup><id type="unit" value="SYEN12023"></id></idGroup><countGroup><count type="pageTotal" number="7"></count></countGroup><titleGroup><title type="articleCategory">Original Article</title><title type="tocHeading1">Original Articles</title></titleGroup><copyright ownership="thirdParty">© 2013 The Royal Entomological Society</copyright><eventGroup><event type="manuscriptAccepted" date="2013-04-03"></event><event type="xmlCreated" agent="Laserwords Private Ltd." date="2013-05-28"></event><event type="publishedOnlineEarlyUnpaginated" date="2013-06-19"></event><event type="firstOnline" date="2013-06-19"></event><event type="publishedOnlineFinalForm" date="2013-09-04"></event><event type="xmlConverted" agent="Converter:WILEY_ML3G_TO_WILEY_ML3GV2 version:3.8.8" date="2014-02-10"></event><event type="xmlConverted" agent="Converter:WML3G_To_WML3G version:4.6.4 mode:FullText" date="2015-10-02"></event></eventGroup><numberingGroup><numbering type="pageFirst">654</numbering><numbering type="pageLast">660</numbering></numberingGroup><correspondenceTo>Correspondence: Jan Ševčík, Department of Biology and Ecology, University of Ostrava, Chittussiho 10, CZ‐710 00 Ostrava & Silesian Museum, Tyršova 1, CZ‐746 01 Opava, Czech Republic. E‐mail: <email>sevcikjan@hotmail.com</email></correspondenceTo><linkGroup><link type="toTypesetVersion" href="file:SYEN.SYEN12023.pdf"></link></linkGroup></publicationMeta><contentMeta><titleGroup><title type="main">Molecular phylogeny of fungus gnats (<fc>D</fc>iptera: <fc>M</fc>ycetophilidae) revisited: position of <fc>M</fc>anotinae, <fc>M</fc>etanepsiini, and other enigmatic taxa as inferred from multigene analysis</title><title type="short">Molecular phylogeny of fungus gnats revisited</title><title type="shortAuthors">J. Ševčík et al</title></titleGroup><creators><creator creatorRole="author" xml:id="syen12023-cr-0001" affiliationRef="#syen12023-aff-0001" corresponding="yes"><personName><givenNames>JAN</givenNames><familyName>ŠEVČÍK</familyName></personName></creator><creator creatorRole="author" xml:id="syen12023-cr-0002" affiliationRef="#syen12023-aff-0002"><personName><givenNames>DAVID</givenNames><familyName>KASPŘÁK</familyName></personName></creator><creator creatorRole="author" xml:id="syen12023-cr-0003" affiliationRef="#syen12023-aff-0003"><personName><givenNames>ANDREA</givenNames><familyName>TÓTHOVÁ</familyName></personName></creator></creators><affiliationGroup xml:id="syen12023-affgp-0001"><affiliation countryCode="CZ" type="organization" xml:id="syen12023-aff-0001"><orgDiv>Department of Biology and Ecology</orgDiv><orgName>University of Ostrava</orgName><address><city>Ostrava</city><country>Czech Republic</country></address></affiliation><affiliation countryCode="CZ" type="organization" xml:id="syen12023-aff-0002"><orgDiv>Life Science Research Centre</orgDiv><orgName>University of Ostrava</orgName><address><city>Ostrava</city><country>Czech Republic</country></address></affiliation><affiliation countryCode="CZ" type="organization" xml:id="syen12023-aff-0003"><orgDiv>Department of Botany and Zoology</orgDiv><orgName>Masaryk University</orgName><address><city>Brno</city><country>Czech Republic</country></address></affiliation></affiliationGroup><fundingInfo><fundingAgency>Life Science Research Centre at the University of Ostrava</fundingAgency></fundingInfo><fundingInfo><fundingAgency>Silesian Museum in Opava (Czech Republic)</fundingAgency><fundingNumber>IGS201103</fundingNumber></fundingInfo><fundingInfo><fundingAgency>U.S. National Science Foundation</fundingAgency><fundingNumber>DEB‐0542864</fundingNumber></fundingInfo><fundingInfo><fundingAgency>National Research Council of Thailand</fundingAgency></fundingInfo><fundingInfo><fundingAgency>Department of National Parks, Wildlife and Plant Conservation, Thailand</fundingAgency></fundingInfo><fundingInfo><fundingAgency>CIPRES</fundingAgency></fundingInfo><supportingInformation xml:id="syen12023-supinf-0001"><supportingInfoItem xml:id="syen12023-supitem-0001"><mediaResource alt="supplementary data" mimeType="application/unknown" rendition="webOriginal" href="urn-x:wiley:03076970:media:syen12023:syen12023-sup-0001-TableS1"></mediaResource><caption>Table S1. List of fungus gnat specimens used for DNA extraction, with specimen identification number and GenBank accession numbers. More information about the specimens is listed in the supporting information. All the specimens are males.</caption></supportingInfoItem><supportingInfoItem xml:id="syen12023-supitem-0002"><mediaResource alt="supplementary data" mimeType="application/unknown" rendition="webOriginal" href="urn-x:wiley:03076970:media:syen12023:syen12023-sup-0002-TableS2"></mediaResource><caption>Table S2. List of additional taxa and sequences used in the extended dataset for <fc>B</fc>ayesian analysis of <fc>M</fc>ycetophilidae, with <fc>G</fc>enBank accession numbers.</caption></supportingInfoItem><supportingInfoItem xml:id="syen12023-supitem-0003"><mediaResource alt="supplementary data" mimeType="application/unknown" rendition="webOriginal" href="urn-x:wiley:03076970:media:syen12023:syen12023-sup-0003-TableS3"></mediaResource><caption>Table S3. List of primers used for sequencing <i>12S</i> ribosomal RNA, <i>16S</i> ribosomal RNA, <i>28S</i> ribosomal RNA, cytochrome oxidase subunit I (<i>COI</i>) and subunit II (<i>COII</i>), cytochrome b (<i>Cytb</i>) and internal transcribed spacer 2 (<i>ITS2</i>).</caption></supportingInfoItem><supportingInfoItem xml:id="syen12023-supitem-0004"><mediaResource alt="supplementary data" mimeType="application/unknown" rendition="webOriginal" href="urn-x:wiley:03076970:media:syen12023:syen12023-sup-0004-TableS4"></mediaResource><caption>Table S4. List of specimens included in the phylogenetic analysis.</caption></supportingInfoItem><supportingInfoItem xml:id="syen12023-supitem-0005"><mediaResource alt="supplementary data" mimeType="application/unknown" rendition="webOriginal" href="urn-x:wiley:03076970:media:syen12023:syen12023-sup-0005-FigureS1"></mediaResource><caption>Figure S1. Bayesian hypothesis for Mycetophilidae relationships based on DNA sequence data, including additional data from GenBank. Values of posterior probability (PP) over 0.5 are given above node numbers. The long branch leading to <i>Paramanota</i> has been shortened by half to fit it into the graphic. The image is of <i>Manota unifurcata</i> (Lundström), a representative of the Manotinae.</caption></supportingInfoItem></supportingInformation><abstractGroup><abstract type="main" xml:id="syen12023-abs-0001"><title type="main">Abstract</title><p xml:id="syen12023-para-0001">The phylogeny of selected genera from four subfamilies of fungus gnats (<fc>D</fc>iptera: <fc>M</fc>ycetophilidae) – <fc>M</fc>anotinae, <fc>L</fc>eiinae, <fc>S</fc>ciophilinae and <fc>G</fc>noristinae (including <fc>M</fc>etanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (<fc><i>12S</i></fc>, <fc><i>16S</i></fc>, <fc><i>COI</i></fc>, <fc><i>COII</i></fc>, <fc><i>cytB</i></fc>) and two nuclear (<fc><i>28S</i></fc>, <fc><i>ITS2</i></fc>) gene markers. Results of the different analyses all support <fc>M</fc>anotinae as a monophyletic group, with <fc>L</fc>eiinae as the sister group. <fi>Allactoneura</fi> <fc>DeMeijere</fc> is nested in the monophyletic and strongly supported clade of <fc>L</fc>eiinae. The tribe <fc>M</fc>etanepsiini is revealed as paraphyletic and the genera <fi>Metanepsia</fi> <fc>E</fc>dwards and <fi>Chalastonepsia</fi> <fc>S</fc>øli do not appear to be closely related. The genera <fi>Docosia</fi> <fc>W</fc>innertz, <fi>Ectrepesthoneura</fi> <fc>E</fc>nderlein, <fi>Novakia</fi> <fc>S</fc>trobl and <fi>Syntemna</fi> <fc>W</fc>innertz were placed with a group of genera included traditionally in the <fc>G</fc>noristinae. The monophyly of <fi>Dziedzickia</fi> <fc>J</fc>ohannsen and <fi>Phthinia</fi> <fc>W</fc>innertz is not supported. The genera of <fc>S</fc>ciophilinae (excluding <fi>Paratinia</fi> <fc>M</fc>ik but including <fi>Eudicrana</fi> <fc>L</fc>oew) form a monophyletic group in the <fc>B</fc>ayesian model.</p></abstract></abstractGroup></contentMeta></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title></titleInfo><titleInfo type="abbreviated" lang="en"><title>Molecular phylogeny of fungus gnats revisited</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title></titleInfo><name type="personal"><namePart type="given">JAN</namePart><namePart type="family">ŠEVČÍK</namePart><affiliation>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</affiliation><description>Correspondence: Jan Ševčík, Department of Biology and Ecology, University of Ostrava, Chittussiho 10, CZ‐710 00 Ostrava & Silesian Museum, Tyršova 1, CZ‐746 01 Opava, Czech Republic. E‐mail: </description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">DAVID</namePart><namePart type="family">KASPŘÁK</namePart><affiliation>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">ANDREA</namePart><namePart type="family">TÓTHOVÁ</namePart><affiliation>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article"></genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><place><placeTerm type="text">Oxford, UK</placeTerm></place><dateIssued encoding="w3cdtf">2013-10</dateIssued><dateCreated encoding="w3cdtf">2013-05-28</dateCreated><dateValid encoding="w3cdtf">2013-04-03</dateValid><copyrightDate encoding="w3cdtf">2013</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract>The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</abstract><note type="additional physical form">Table S1. List of fungus gnat specimens used for DNA extraction, with specimen identification number and GenBank accession numbers. More information about the specimens is listed in the supporting information. All the specimens are males.Table S2. List of additional taxa and sequences used in the extended dataset for Bayesian analysis of Mycetophilidae, with GenBank accession numbers.Table S3. List of primers used for sequencing 12S ribosomal RNA, 16S ribosomal RNA, 28S ribosomal RNA, cytochrome oxidase subunit I (COI) and subunit II (COII), cytochrome b (Cytb) and internal transcribed spacer 2 (ITS2).Table S4. List of specimens included in the phylogenetic analysis.Figure S1. Bayesian hypothesis for Mycetophilidae relationships based on DNA sequence data, including additional data from GenBank. Values of posterior probability (PP) over 0.5 are given above node numbers. The long branch leading to Paramanota has been shortened by half to fit it into the graphic. The image is of Manota unifurcata (Lundström), a representative of the Manotinae.</note><note type="funding">Life Science Research Centre at the University of Ostrava</note><note type="funding">Silesian Museum in Opava (Czech Republic) - No. IGS201103; </note><note type="funding">U.S. National Science Foundation - No. DEB‐0542864; </note><note type="funding">National Research Council of Thailand</note><note type="funding">Department of National Parks, Wildlife and Plant Conservation, Thailand</note><note type="funding">CIPRES</note><relatedItem type="host"><titleInfo><title>Systematic Entomology</title></titleInfo><titleInfo type="abbreviated"><title>Syst Entomol</title></titleInfo><genre type="journal">journal</genre><subject><genre>article-category</genre><topic>Original Article</topic></subject><identifier type="ISSN">0307-6970</identifier><identifier type="eISSN">1365-3113</identifier><identifier type="DOI">10.1111/(ISSN)1365-3113</identifier><identifier type="PublisherID">SYEN</identifier><part><date>2013</date><detail type="volume"><caption>vol.</caption><number>38</number></detail><detail type="issue"><caption>no.</caption><number>4</number></detail><extent unit="pages"><start>654</start><end>660</end><total>7</total></extent></part></relatedItem><identifier type="istex">BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0</identifier><identifier type="DOI">10.1111/syen.12023</identifier><identifier type="ArticleID">SYEN12023</identifier><accessCondition type="use and reproduction" contentType="copyright">© 2013 The Royal Entomological Society© 2013 The Royal Entomological Society</accessCondition><recordInfo><recordContentSource>WILEY</recordContentSource><recordOrigin>Blackwell Publishing Ltd</recordOrigin></recordInfo></mods></metadata><enrichments><json:item><type>multicat</type><uri>https://api.istex.fr/document/BFC68CE8C08E71DD7E1659CAACC4B201146CC1F0/enrichments/multicat</uri></json:item></enrichments><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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