Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis
Identifieur interne : 000604 ( Istex/Corpus ); précédent : 000603; suivant : 000605Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis
Auteurs : Jan Šev K ; David Kasp K ; Andrea T ThováSource :
- Systematic Entomology [ 0307-6970 ] ; 2013-10.
Abstract
The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.
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DOI: 10.1111/syen.12023
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<front><div type="abstract">The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</div>
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<notesStmt><note>Table S1. List of fungus gnat specimens used for DNA extraction, with specimen identification number and GenBank accession numbers. More information about the specimens is listed in the supporting information. All the specimens are males.Table S2. List of additional taxa and sequences used in the extended dataset for Bayesian analysis of Mycetophilidae, with GenBank accession numbers.Table S3. List of primers used for sequencing 12S ribosomal RNA, 16S ribosomal RNA, 28S ribosomal RNA, cytochrome oxidase subunit I (COI) and subunit II (COII), cytochrome b (Cytb) and internal transcribed spacer 2 (ITS2).Table S4. List of specimens included in the phylogenetic analysis.Figure S1. Bayesian hypothesis for Mycetophilidae relationships based on DNA sequence data, including additional data from GenBank. Values of posterior probability (PP) over 0.5 are given above node numbers. The long branch leading to Paramanota has been shortened by half to fit it into the graphic. The image is of Manota unifurcata (Lundström), a representative of the Manotinae.</note>
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<abstractGroup><abstract type="main" xml:id="syen12023-abs-0001"><title type="main">Abstract</title>
<p xml:id="syen12023-para-0001">The phylogeny of selected genera from four subfamilies of fungus gnats (<fc>D</fc>
iptera: <fc>M</fc>
ycetophilidae) – <fc>M</fc>
anotinae, <fc>L</fc>
eiinae, <fc>S</fc>
ciophilinae and <fc>G</fc>
noristinae (including <fc>M</fc>
etanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (<fc><i>12S</i>
</fc>
, <fc><i>16S</i>
</fc>
, <fc><i>COI</i>
</fc>
, <fc><i>COII</i>
</fc>
, <fc><i>cytB</i>
</fc>
) and two nuclear (<fc><i>28S</i>
</fc>
, <fc><i>ITS2</i>
</fc>
) gene markers. Results of the different analyses all support <fc>M</fc>
anotinae as a monophyletic group, with <fc>L</fc>
eiinae as the sister group. <fi>Allactoneura</fi>
<fc>DeMeijere</fc>
is nested in the monophyletic and strongly supported clade of <fc>L</fc>
eiinae. The tribe <fc>M</fc>
etanepsiini is revealed as paraphyletic and the genera <fi>Metanepsia</fi>
<fc>E</fc>
dwards and <fi>Chalastonepsia</fi>
<fc>S</fc>
øli do not appear to be closely related. The genera <fi>Docosia</fi>
<fc>W</fc>
innertz, <fi>Ectrepesthoneura</fi>
<fc>E</fc>
nderlein, <fi>Novakia</fi>
<fc>S</fc>
trobl and <fi>Syntemna</fi>
<fc>W</fc>
innertz were placed with a group of genera included traditionally in the <fc>G</fc>
noristinae. The monophyly of <fi>Dziedzickia</fi>
<fc>J</fc>
ohannsen and <fi>Phthinia</fi>
<fc>W</fc>
innertz is not supported. The genera of <fc>S</fc>
ciophilinae (excluding <fi>Paratinia</fi>
<fc>M</fc>
ik but including <fi>Eudicrana</fi>
<fc>L</fc>
oew) form a monophyletic group in the <fc>B</fc>
ayesian model.</p>
</abstract>
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<mods version="3.6"><titleInfo lang="en"><title>Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title>
</titleInfo>
<titleInfo type="abbreviated" lang="en"><title>Molecular phylogeny of fungus gnats revisited</title>
</titleInfo>
<titleInfo type="alternative" contentType="CDATA" lang="en"><title>Molecular phylogeny of fungus gnats (Diptera: Mycetophilidae) revisited: position of Manotinae, Metanepsiini, and other enigmatic taxa as inferred from multigene analysis</title>
</titleInfo>
<name type="personal"><namePart type="given">JAN</namePart>
<namePart type="family">ŠEVČÍK</namePart>
<affiliation>Department of Biology and Ecology, University of Ostrava, Ostrava, Czech Republic</affiliation>
<description>Correspondence: Jan Ševčík, Department of Biology and Ecology, University of Ostrava, Chittussiho 10, CZ‐710 00 Ostrava & Silesian Museum, Tyršova 1, CZ‐746 01 Opava, Czech Republic. E‐mail: </description>
<role><roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal"><namePart type="given">DAVID</namePart>
<namePart type="family">KASPŘÁK</namePart>
<affiliation>Life Science Research Centre, University of Ostrava, Ostrava, Czech Republic</affiliation>
<role><roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal"><namePart type="given">ANDREA</namePart>
<namePart type="family">TÓTHOVÁ</namePart>
<affiliation>Department of Botany and Zoology, Masaryk University, Brno, Czech Republic</affiliation>
<role><roleTerm type="text">author</roleTerm>
</role>
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<typeOfResource>text</typeOfResource>
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<originInfo><publisher>Blackwell Publishing Ltd</publisher>
<place><placeTerm type="text">Oxford, UK</placeTerm>
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<dateIssued encoding="w3cdtf">2013-10</dateIssued>
<dateCreated encoding="w3cdtf">2013-05-28</dateCreated>
<dateValid encoding="w3cdtf">2013-04-03</dateValid>
<copyrightDate encoding="w3cdtf">2013</copyrightDate>
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<languageTerm type="code" authority="iso639-2b">eng</languageTerm>
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<abstract>The phylogeny of selected genera from four subfamilies of fungus gnats (Diptera: Mycetophilidae) – Manotinae, Leiinae, Sciophilinae and Gnoristinae (including Metanepsiini) – is reconstructed based on the combined analysis of five mitochondrial (12S, 16S, COI, COII, cytB) and two nuclear (28S, ITS2) gene markers. Results of the different analyses all support Manotinae as a monophyletic group, with Leiinae as the sister group. Allactoneura DeMeijere is nested in the monophyletic and strongly supported clade of Leiinae. The tribe Metanepsiini is revealed as paraphyletic and the genera Metanepsia Edwards and Chalastonepsia Søli do not appear to be closely related. The genera Docosia Winnertz, Ectrepesthoneura Enderlein, Novakia Strobl and Syntemna Winnertz were placed with a group of genera included traditionally in the Gnoristinae. The monophyly of Dziedzickia Johannsen and Phthinia Winnertz is not supported. The genera of Sciophilinae (excluding Paratinia Mik but including Eudicrana Loew) form a monophyletic group in the Bayesian model.</abstract>
<note type="additional physical form">Table S1. List of fungus gnat specimens used for DNA extraction, with specimen identification number and GenBank accession numbers. More information about the specimens is listed in the supporting information. All the specimens are males.Table S2. List of additional taxa and sequences used in the extended dataset for Bayesian analysis of Mycetophilidae, with GenBank accession numbers.Table S3. List of primers used for sequencing 12S ribosomal RNA, 16S ribosomal RNA, 28S ribosomal RNA, cytochrome oxidase subunit I (COI) and subunit II (COII), cytochrome b (Cytb) and internal transcribed spacer 2 (ITS2).Table S4. List of specimens included in the phylogenetic analysis.Figure S1. Bayesian hypothesis for Mycetophilidae relationships based on DNA sequence data, including additional data from GenBank. Values of posterior probability (PP) over 0.5 are given above node numbers. The long branch leading to Paramanota has been shortened by half to fit it into the graphic. The image is of Manota unifurcata (Lundström), a representative of the Manotinae.</note>
<note type="funding">Life Science Research Centre at the University of Ostrava</note>
<note type="funding">Silesian Museum in Opava (Czech Republic) - No. IGS201103; </note>
<note type="funding">U.S. National Science Foundation - No. DEB‐0542864; </note>
<note type="funding">National Research Council of Thailand</note>
<note type="funding">Department of National Parks, Wildlife and Plant Conservation, Thailand</note>
<note type="funding">CIPRES</note>
<relatedItem type="host"><titleInfo><title>Systematic Entomology</title>
</titleInfo>
<titleInfo type="abbreviated"><title>Syst Entomol</title>
</titleInfo>
<genre type="journal">journal</genre>
<subject><genre>article-category</genre>
<topic>Original Article</topic>
</subject>
<identifier type="ISSN">0307-6970</identifier>
<identifier type="eISSN">1365-3113</identifier>
<identifier type="DOI">10.1111/(ISSN)1365-3113</identifier>
<identifier type="PublisherID">SYEN</identifier>
<part><date>2013</date>
<detail type="volume"><caption>vol.</caption>
<number>38</number>
</detail>
<detail type="issue"><caption>no.</caption>
<number>4</number>
</detail>
<extent unit="pages"><start>654</start>
<end>660</end>
<total>7</total>
</extent>
</part>
</relatedItem>
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<identifier type="DOI">10.1111/syen.12023</identifier>
<identifier type="ArticleID">SYEN12023</identifier>
<accessCondition type="use and reproduction" contentType="copyright">© 2013 The Royal Entomological Society© 2013 The Royal Entomological Society</accessCondition>
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