BioSEME: A Semantically-Integrated Content Management System for Cancer Research
Identifieur interne : 000502 ( Istex/Corpus ); précédent : 000501; suivant : 000503BioSEME: A Semantically-Integrated Content Management System for Cancer Research
Auteurs : Mihai StancuSource :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2011.
Abstract
Abstract: In this project, we propose a paradigm shift from the use of relational databases and traditional web publishing tools to a Semantically-Integrated Research Content Management System augmented with research collaboration functionality for curation of cancer research data. By using a prototype called BioSEME, we will aggregate cancer biomarker-related PubMed literature data using term-specific data feeds. The data will then be annotated by designated users using the standardized taxonomy and vocabulary derived from known ontologies and cancer-related literature, which is subsequently associated and published through the semantically-enhanced user interface. We believe that in the future such online collaborative-research community and semantically-integrated virtual scientific knowledge environment will help support the cancer research community.
Url:
DOI: 10.1007/978-3-642-21657-2_30
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ISTEX:71F931A27A5FD39240359DDEEA0EF5716504E30BLe document en format XML
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By using a prototype called BioSEME, we will aggregate cancer biomarker-related PubMed literature data using term-specific data feeds. The data will then be annotated by designated users using the standardized taxonomy and vocabulary derived from known ontologies and cancer-related literature, which is subsequently associated and published through the semantically-enhanced user interface. We believe that in the future such online collaborative-research community and semantically-integrated virtual scientific knowledge environment will help support the cancer research community.</p></abstract><textClass><keywords scheme="Book-Subject-Collection"><list><label>SUCO11645</label><item><term>Computer Science</term></item></list></keywords></textClass><textClass><keywords scheme="Book-Subject-Group"><list><label>I</label><label>I18067</label><item><term>Computer Science</term></item><item><term>User Interfaces and Human Computer Interaction</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="2011">Published</change><change xml:id="refBibs-istex" who="#ISTEX-API" when="2016-09-22">References 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Plastira 100, Vassilika Vouton</Street><Postcode>70013</Postcode><City>Heraklion</City><State>Crete</State><Country>Greece</Country></OrgAddress></Affiliation></EditorGroup></BookHeader><Part ID="Part3"><PartInfo TocLevels="0"><PartID>3</PartID><PartNumber>Part III</PartNumber><PartSequenceNumber>3</PartSequenceNumber><PartTitle>Universal Access in Complex Working Environments</PartTitle><PartChapterCount>13</PartChapterCount><PartContext><SeriesID>558</SeriesID><BookTitle>Universal Access in Human-Computer Interaction</BookTitle></PartContext></PartInfo><Chapter ID="Chap30" Language="En"><ChapterInfo ChapterType="OriginalPaper" ContainsESM="No" NumberingDepth="2" NumberingStyle="ContentOnly" TocLevels="0"><ChapterID>30</ChapterID><ChapterDOI>10.1007/978-3-642-21657-2_30</ChapterDOI><ChapterSequenceNumber>30</ChapterSequenceNumber><ChapterTitle Language="En">BioSEME: A Semantically-Integrated Content Management System for Cancer Research</ChapterTitle><ChapterFirstPage>282</ChapterFirstPage><ChapterLastPage>291</ChapterLastPage><ChapterCopyright><CopyrightHolderName>Springer-Verlag Berlin Heidelberg</CopyrightHolderName><CopyrightYear>2011</CopyrightYear></ChapterCopyright><ChapterGrants Type="Regular"><MetadataGrant Grant="OpenAccess"></MetadataGrant><AbstractGrant Grant="OpenAccess"></AbstractGrant><BodyPDFGrant Grant="Restricted"></BodyPDFGrant><BodyHTMLGrant Grant="Restricted"></BodyHTMLGrant><BibliographyGrant Grant="Restricted"></BibliographyGrant><ESMGrant Grant="Restricted"></ESMGrant></ChapterGrants><ChapterContext><SeriesID>558</SeriesID><PartID>3</PartID><BookID>978-3-642-21657-2</BookID><BookTitle>Universal Access in Human-Computer Interaction</BookTitle></ChapterContext></ChapterInfo><ChapterHeader><AuthorGroup><Author AffiliationIDS="Aff17"><AuthorName DisplayOrder="Western"><GivenName>Ionut</GivenName><GivenName>Mihai</GivenName><FamilyName>Stancu</FamilyName></AuthorName><Contact><Email>imstancu@umail.iu.edu</Email></Contact></Author><Affiliation ID="Aff17"><OrgName>Indiana University - School of Informatics</OrgName><OrgAddress><City>Indianapolis</City><State>Indiana</State><Country>USA</Country></OrgAddress></Affiliation></AuthorGroup><Abstract ID="Abs1" Language="En"><Heading>Abstract</Heading><Para>In this project, we propose a paradigm shift from the use of relational databases and traditional web publishing tools to a Semantically-Integrated Research Content Management System augmented with research collaboration functionality for curation of cancer research data. By using a prototype called BioSEME, we will aggregate cancer biomarker-related PubMed literature data using term-specific data feeds. The data will then be annotated by designated users using the standardized taxonomy and vocabulary derived from known ontologies and cancer-related literature, which is subsequently associated and published through the semantically-enhanced user interface. We believe that in the future such online collaborative-research community and semantically-integrated virtual scientific knowledge environment will help support the cancer research community.</Para></Abstract><KeywordGroup Language="En"><Heading>Keywords</Heading><Keyword>BioSEME</Keyword><Keyword>Semantically-Integrated Content Management System</Keyword><Keyword>Online Collaborative-Research Community</Keyword><Keyword>Virtual Scientific Research and Knowledge Environment</Keyword></KeywordGroup></ChapterHeader><NoBody></NoBody></Chapter></Part></Book></Series></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>BioSEME: A Semantically-Integrated Content Management System for Cancer Research</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>BioSEME: A Semantically-Integrated Content Management System for Cancer Research</title></titleInfo><name type="personal"><namePart type="given">Ionut</namePart><namePart type="given">Mihai</namePart><namePart type="family">Stancu</namePart><affiliation>Indiana University - School of Informatics, Indianapolis, Indiana, USA</affiliation><affiliation>E-mail: imstancu@umail.iu.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="conference" displayLabel="OriginalPaper"></genre><originInfo><publisher>Springer Berlin Heidelberg</publisher><place><placeTerm type="text">Berlin, Heidelberg</placeTerm></place><dateIssued encoding="w3cdtf">2011</dateIssued><copyrightDate encoding="w3cdtf">2011</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Abstract: In this project, we propose a paradigm shift from the use of relational databases and traditional web publishing tools to a Semantically-Integrated Research Content Management System augmented with research collaboration functionality for curation of cancer research data. By using a prototype called BioSEME, we will aggregate cancer biomarker-related PubMed literature data using term-specific data feeds. The data will then be annotated by designated users using the standardized taxonomy and vocabulary derived from known ontologies and cancer-related literature, which is subsequently associated and published through the semantically-enhanced user interface. We believe that in the future such online collaborative-research community and semantically-integrated virtual scientific knowledge environment will help support the cancer research community.</abstract><relatedItem type="host"><titleInfo><title>Universal Access in Human-Computer Interaction. Applications and Services</title><subTitle>6th International Conference, UAHCI 2011, Held as Part of HCI International 2011, Orlando, FL, USA, July 9-14, 2011, Proceedings, Part IV</subTitle></titleInfo><name type="personal"><namePart type="given">Constantine</namePart><namePart type="family">Stephanidis</namePart><affiliation>Institute of Computer Science, Foundation for Research and Technology - Hellas, N. Plastira 100, Vassilika Vouton, 70013, Heraklion, Crete, Greece</affiliation><affiliation>E-mail: cs@ics.forth.gr</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><genre type="book-series" displayLabel="Proceedings"></genre><originInfo><copyrightDate encoding="w3cdtf">2011</copyrightDate><issuance>monographic</issuance></originInfo><subject><genre>Book-Subject-Collection</genre><topic authority="SpringerSubjectCodes" authorityURI="SUCO11645">Computer Science</topic></subject><subject><genre>Book-Subject-Group</genre><topic authority="SpringerSubjectCodes" authorityURI="I">Computer Science</topic><topic authority="SpringerSubjectCodes" authorityURI="I18067">User Interfaces and Human Computer Interaction</topic></subject><identifier type="DOI">10.1007/978-3-642-21657-2</identifier><identifier type="ISBN">978-3-642-21656-5</identifier><identifier type="eISBN">978-3-642-21657-2</identifier><identifier type="ISSN">0302-9743</identifier><identifier type="eISSN">1611-3349</identifier><identifier type="BookTitleID">271023</identifier><identifier type="BookID">978-3-642-21657-2</identifier><identifier type="BookChapterCount">72</identifier><identifier type="BookVolumeNumber">6768</identifier><identifier type="BookSequenceNumber">6768</identifier><identifier type="PartChapterCount">13</identifier><part><date>2011</date><detail type="part"><title>Part III: Universal Access in Complex Working Environments</title></detail><detail type="volume"><number>6768</number><caption>vol.</caption></detail><extent unit="pages"><start>282</start><end>291</end></extent></part><recordInfo><recordOrigin>Springer-Verlag GmbH Berlin Heidelberg, 2011</recordOrigin></recordInfo></relatedItem><relatedItem type="series"><titleInfo><title>Lecture Notes in Computer Science</title></titleInfo><name type="personal"><namePart type="given">David</namePart><namePart type="family">Hutchison</namePart><affiliation>Lancaster University, Lancaster, UK</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Takeo</namePart><namePart type="family">Kanade</namePart><affiliation>Carnegie Mellon University, Pittsburgh, PA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Josef</namePart><namePart type="family">Kittler</namePart><affiliation>University of Surrey, Guildford, UK</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Jon</namePart><namePart type="given">M.</namePart><namePart type="family">Kleinberg</namePart><affiliation>Cornell University, Ithaca, NY, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Friedemann</namePart><namePart type="family">Mattern</namePart><affiliation>ETH Zurich, Zurich, Switzerland</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">John</namePart><namePart type="given">C.</namePart><namePart type="family">Mitchell</namePart><affiliation>Stanford University, Stanford, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Moni</namePart><namePart type="family">Naor</namePart><affiliation>Weizmann Institute of Science, Rehovot, Israel</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Oscar</namePart><namePart type="family">Nierstrasz</namePart><affiliation>University of Bern, Bern, Switzerland</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">C.</namePart><namePart type="family">Pandu Rangan</namePart><affiliation>Indian Institute of Technology, Madras, India</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Bernhard</namePart><namePart type="family">Steffen</namePart><affiliation>University of Dortmund, Dortmund, Germany</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Madhu</namePart><namePart type="family">Sudan</namePart><affiliation>Massachusetts Institute of Technology, MA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Demetri</namePart><namePart type="family">Terzopoulos</namePart><affiliation>University of California, Los Angeles, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Doug</namePart><namePart type="family">Tygar</namePart><affiliation>University of California, Berkeley, CA, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Moshe</namePart><namePart type="given">Y.</namePart><namePart type="family">Vardi</namePart><affiliation>Rice University, Houston, TX, USA</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><name type="personal"><namePart type="given">Gerhard</namePart><namePart type="family">Weikum</namePart><affiliation>Max-Planck Institute of Computer Science, Saarbrücken, Germany</affiliation><role><roleTerm type="text">editor</roleTerm></role></name><originInfo><copyrightDate encoding="w3cdtf">2011</copyrightDate><issuance>serial</issuance></originInfo><identifier type="ISSN">0302-9743</identifier><identifier type="eISSN">1611-3349</identifier><identifier type="SeriesID">558</identifier><part><detail type="volume"><number>Part III</number><caption>vol.</caption></detail></part><recordInfo><recordOrigin>Springer-Verlag GmbH Berlin Heidelberg, 2011</recordOrigin></recordInfo></relatedItem><identifier 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