Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux
Identifieur interne : 000433 ( Istex/Corpus ); précédent : 000432; suivant : 000434Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux
Auteurs : J. F. Bowring ; N. M. Mclean ; S. A. BowringSource :
- Geochemistry, Geophysics, Geosystems [ 1525-2027 ] ; 2011-06.
Abstract
In the past decade, major advancements in precision and accuracy of U‐Pb geochronology, which stem from improved sample pretreatment and refined measurement techniques, have revealed previously unresolvable discrepancies among analyses from different laboratories. One solution to evaluating and resolving many of these discrepancies is the adoption of a common software platform that standardizes data‐processing protocols, enabling robust interlaboratory comparisons. We present the results of a collaboration to develop cyber infrastructure for high‐precision U‐Pb geochronology based on analyzing accessory minerals by isotope dilution‐thermal ionization mass spectrometry. This cyber infrastructure implements an architecture specifying the workflows of data acquisition, statistical filtering, analysis and interpretation, publication, community‐based archiving, and the compilation and comparison of data from different laboratories. The backbone of the cyber infrastructure consists of two open‐source software programs: Tripoli and U‐Pb_Redux. Tripoli interfaces with commercially available mass spectrometers using standardized protocols, statistical filtering, and interactive visualizations to aid the analyst in preparing raw data for analysis in U‐Pb_Redux. U‐Pb_Redux implements the architecture by orchestrating the analyst's workflow with interactive visualizations and provides data reduction and uncertainty propagation that support data interpretations. Finally, U‐Pb_Redux enables production of publication‐ready graphics and data tables, the archiving of results, and the comparative compilation of archived results to support cooperative science.
Url:
DOI: 10.1029/2010GC003479
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One solution to evaluating and resolving many of these discrepancies is the adoption of a common software platform that standardizes data‐processing protocols, enabling robust interlaboratory comparisons. We present the results of a collaboration to develop cyber infrastructure for high‐precision U‐Pb geochronology based on analyzing accessory minerals by isotope dilution‐thermal ionization mass spectrometry. This cyber infrastructure implements an architecture specifying the workflows of data acquisition, statistical filtering, analysis and interpretation, publication, community‐based archiving, and the compilation and comparison of data from different laboratories. The backbone of the cyber infrastructure consists of two open‐source software programs: Tripoli and U‐Pb_Redux. Tripoli interfaces with commercially available mass spectrometers using standardized protocols, statistical filtering, and interactive visualizations to aid the analyst in preparing raw data for analysis in U‐Pb_Redux. U‐Pb_Redux implements the architecture by orchestrating the analyst's workflow with interactive visualizations and provides data reduction and uncertainty propagation that support data interpretations. Finally, U‐Pb_Redux enables production of publication‐ready graphics and data tables, the archiving of results, and the comparative compilation of archived results to support cooperative science.</div></front></TEI><istex><corpusName>wiley</corpusName><author><json:item><name>J. F. Bowring</name><affiliations><json:string>Department of Computer Science, College of Charleston, 66 George Street,, South Carolina, 29424, Charleston, USA</json:string><json:string>E-mail: bowringj@cofc.edu</json:string></affiliations></json:item><json:item><name>N. M. 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F.</givenNames></author>, <author><givenNames>N. M.</givenNames> <familyName>McLean</familyName></author>, and <author><givenNames>S. A.</givenNames> <familyName>Bowring</familyName></author> (<pubYear year="2011">2011</pubYear>), <articleTitle>Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux</articleTitle>, <journalTitle>Geochem. Geophys. 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F.</givenNames> <familyName>Bowring</familyName></personName><contactDetails><email normalForm="bowringj@cofc.edu">bowringj@cofc.edu</email></contactDetails></creator><creator creatorRole="author" xml:id="ggge1933-cr-0002" affiliationRef="#ggge1933-aff-0002"><personName><givenNames>N. M.</givenNames> <familyName>McLean</familyName></personName></creator><creator creatorRole="author" xml:id="ggge1933-cr-0003" affiliationRef="#ggge1933-aff-0002"><personName><givenNames>S. A.</givenNames> <familyName>Bowring</familyName></personName></creator></creators><affiliationGroup><affiliation countryCode="US" type="organization" xml:id="ggge1933-aff-0001"><orgDiv>Department of Computer Science</orgDiv><orgName>College of Charleston</orgName><address><street>66 George Street,</street><city>Charleston</city><countryPart>South Carolina</countryPart><postCode>29424</postCode><country>USA</country></address></affiliation><affiliation countryCode="US" type="organization" xml:id="ggge1933-aff-0002"><orgDiv>Department of Earth, Atmospheric, and Planetary Sciences</orgDiv><orgName>MIT</orgName><address><street>Building 54‐1126,</street><city>Cambridge</city><countryPart>Massachusetts</countryPart><postCode>02139</postCode><country>USA</country></address></affiliation></affiliationGroup><keywordGroup type="author"><keyword xml:id="ggge1933-kwd-0001">cyber infrastructure</keyword><keyword xml:id="ggge1933-kwd-0002">geochronology</keyword><keyword xml:id="ggge1933-kwd-0003">software</keyword><keyword xml:id="ggge1933-kwd-0004">uncertainty propagation</keyword><keyword xml:id="ggge1933-kwd-0005">uranium lead</keyword></keywordGroup><abstractGroup><abstract type="main"><p xml:id="ggge1933-para-0001">In the past decade, major advancements in precision and accuracy of U‐Pb geochronology, which stem from improved sample pretreatment and refined measurement techniques, have revealed previously unresolvable discrepancies among analyses from different laboratories. One solution to evaluating and resolving many of these discrepancies is the adoption of a common software platform that standardizes data‐processing protocols, enabling robust interlaboratory comparisons. We present the results of a collaboration to develop cyber infrastructure for high‐precision U‐Pb geochronology based on analyzing accessory minerals by isotope dilution‐thermal ionization mass spectrometry. This cyber infrastructure implements an architecture specifying the workflows of data acquisition, statistical filtering, analysis and interpretation, publication, community‐based archiving, and the compilation and comparison of data from different laboratories. The backbone of the cyber infrastructure consists of two open‐source software programs: Tripoli and U‐Pb_Redux. Tripoli interfaces with commercially available mass spectrometers using standardized protocols, statistical filtering, and interactive visualizations to aid the analyst in preparing raw data for analysis in U‐Pb_Redux. U‐Pb_Redux implements the architecture by orchestrating the analyst's workflow with interactive visualizations and provides data reduction and uncertainty propagation that support data interpretations. Finally, U‐Pb_Redux enables production of publication‐ready graphics and data tables, the archiving of results, and the comparative compilation of archived results to support cooperative science.</p></abstract><abstract type="short"><title type="main">Key Points</title><p xml:id="ggge1933-para-0002"><list style="bulleted"><listItem>We present cyber infrastructure for high‐precision U‐Pb geochronology for ID‐TIMS</listItem><listItem>Tripoli processes mass spectrometer data by statistics interactive visualizations</listItem><listItem>U‐Pb_Redux manages U‐Pb data processing and visualizations</listItem></list></p></abstract></abstractGroup></contentMeta><noteGroup xml:id="ggge1933-ntgp-0000"><note xml:id="ggge1933-note-0000"><p xml:id="ggge1933-para-0000">This is a commentary on DOI:<accessionId ref="info:doi/10.1029/2010GC003478">10.1029/2010GC003478</accessionId></p></note></noteGroup></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux</title></titleInfo><titleInfo type="abbreviated" lang="en"><title>TRIPOLI AND U‐Pb_REDUX SOFTWARE</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux</title></titleInfo><name type="personal"><namePart type="given">J. F.</namePart><namePart type="family">Bowring</namePart><affiliation>Department of Computer Science, College of Charleston, 66 George Street,, South Carolina, 29424, Charleston, USA</affiliation><affiliation>E-mail: bowringj@cofc.edu</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">N. M.</namePart><namePart type="family">McLean</namePart><affiliation>Department of Earth, Atmospheric, and Planetary Sciences, MIT, Building 54‐1126,, Massachusetts, 02139, Cambridge, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">S. A.</namePart><namePart type="family">Bowring</namePart><affiliation>Department of Earth, Atmospheric, and Planetary Sciences, MIT, Building 54‐1126,, Massachusetts, 02139, Cambridge, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article"></genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><dateIssued encoding="w3cdtf">2011-06</dateIssued><dateCaptured encoding="w3cdtf">2010-12-21</dateCaptured><dateValid encoding="w3cdtf">2011-04-05</dateValid><edition>Bowring, J. F., N. M. McLean, and S. A. Bowring (2011), Engineering cyber infrastructure for U‐Pb geochronology: Tripoli and U‐Pb_Redux, Geochem. Geophys. Geosyst., 12, Q0AA19, doi:10.1029/2010GC003479.</edition><copyrightDate encoding="w3cdtf">2011</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType><extent unit="figures">10</extent><extent unit="words">10600</extent></physicalDescription><abstract>In the past decade, major advancements in precision and accuracy of U‐Pb geochronology, which stem from improved sample pretreatment and refined measurement techniques, have revealed previously unresolvable discrepancies among analyses from different laboratories. One solution to evaluating and resolving many of these discrepancies is the adoption of a common software platform that standardizes data‐processing protocols, enabling robust interlaboratory comparisons. We present the results of a collaboration to develop cyber infrastructure for high‐precision U‐Pb geochronology based on analyzing accessory minerals by isotope dilution‐thermal ionization mass spectrometry. This cyber infrastructure implements an architecture specifying the workflows of data acquisition, statistical filtering, analysis and interpretation, publication, community‐based archiving, and the compilation and comparison of data from different laboratories. The backbone of the cyber infrastructure consists of two open‐source software programs: Tripoli and U‐Pb_Redux. Tripoli interfaces with commercially available mass spectrometers using standardized protocols, statistical filtering, and interactive visualizations to aid the analyst in preparing raw data for analysis in U‐Pb_Redux. U‐Pb_Redux implements the architecture by orchestrating the analyst's workflow with interactive visualizations and provides data reduction and uncertainty propagation that support data interpretations. Finally, U‐Pb_Redux enables production of publication‐ready graphics and data tables, the archiving of results, and the comparative compilation of archived results to support cooperative science.</abstract><abstract type="short">We present cyber infrastructure for high‐precision U‐Pb geochronology for ID‐TIMS Tripoli processes mass spectrometer data by statistics interactive visualizations U‐Pb_Redux manages U‐Pb data processing and visualizations</abstract><subject><genre>keywords</genre><topic>cyber infrastructure</topic><topic>geochronology</topic><topic>software</topic><topic>uncertainty propagation</topic><topic>uranium lead</topic></subject><relatedItem type="host"><titleInfo><title>Geochemistry, Geophysics, Geosystems</title></titleInfo><titleInfo type="abbreviated"><title>Geochem. Geophys. Geosyst.</title></titleInfo><genre type="journal">journal</genre><subject><genre>index-terms</genre><topic authorityURI="http://psi.agu.org/specialSection/EARTHTIME1">EarthTime: Advances in Geochronological Technique</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1100">GEOCHRONOLOGY</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1115">Radioisotope geochronology</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1900">INFORMATICS</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1908">Cyberinfrastructure</topic><topic authorityURI="http://psi.agu.org/taxonomy5/1920">Emerging informatics technologies</topic></subject><identifier type="ISSN">1525-2027</identifier><identifier type="eISSN">1525-2027</identifier><identifier type="DOI">10.1002/(ISSN)1525-2027</identifier><identifier type="CODEN">GGGGFR</identifier><identifier type="PublisherID">GGGE</identifier><part><date>2011</date><detail type="title"><title>Geochemistry, Geophysics, Geosystems</title></detail><detail type="volume"><caption>vol.</caption><number>12</number></detail><detail type="issue"><caption>no.</caption><number>6</number></detail><extent unit="pages"><start>n/a</start><end>n/a</end><total>19</total></extent></part></relatedItem><identifier type="istex">CAFBDCAEF347FC05FB591B4DFCF6164558CC4515</identifier><identifier type="DOI">10.1029/2010GC003479</identifier><identifier type="ArticleID">2010GC003479</identifier><accessCondition type="use and reproduction" contentType="copyright">Copyright 2011 by the American Geophysical Union.</accessCondition><recordInfo><recordContentSource>WILEY</recordContentSource></recordInfo></mods></metadata><enrichments><json:item><type>multicat</type><uri>https://api.istex.fr/document/CAFBDCAEF347FC05FB591B4DFCF6164558CC4515/enrichments/multicat</uri></json:item></enrichments><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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