Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases
Identifieur interne : 000271 ( Pmc/Checkpoint ); précédent : 000270; suivant : 000272Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases
Auteurs : Mark J. Costello [Nouvelle-Zélande] ; Philippe Bouchet [France] ; Geoff Boxshall [Royaume-Uni] ; Kristian Fauchald [États-Unis] ; Dennis Gordon [Nouvelle-Zélande] ; Bert W. Hoeksema [Pays-Bas] ; Gary C. B. Poore [Australie] ; Rob W. M. Van Soest [Pays-Bas] ; Sabine Stöhr [Suède] ; T. Chad Walter [États-Unis] ; Bart Vanhoorne [Belgique] ; Wim Decock [Belgique] ; Ward Appeltans [Belgique]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The World Register of Marine Species is an over 90% complete open-access inventory of all marine species names. Here we illustrate the scale of the problems with species names, synonyms, and their classification, and describe how WoRMS publishes online quality assured information on marine species.
Within WoRMS, over 100 global, 12 regional and 4 thematic species databases are integrated with a common taxonomy. Over 240 editors from 133 institutions and 31 countries manage the content. To avoid duplication of effort, content is exchanged with 10 external databases. At present WoRMS contains 460,000 taxonomic names (from Kingdom to subspecies), 368,000 species level combinations of which 215,000 are currently accepted marine species names, and 26,000 related but non-marine species. Associated information includes 150,000 literature sources, 20,000 images, and locations of 44,000 specimens. Usage has grown linearly since its launch in 2007, with about 600,000 unique visitors to the website in 2011, and at least 90 organisations from 12 countries using WoRMS for their data management.
By providing easy access to expert-validated content, WoRMS improves quality control in the use of species names, with consequent benefits to taxonomy, ecology, conservation and marine biodiversity research and management. The service manages information on species names that would otherwise be overly costly for individuals, and thus minimises errors in the application of nomenclature standards. WoRMS' content is expanding to include host-parasite relationships, additional literature sources, locations of specimens, images, distribution range, ecological, and biological data. Species are being categorised as introduced (alien, invasive), of conservation importance, and on other attributes. These developments have a multiplier effect on its potential as a resource for biodiversity research and management. As a consequence of WoRMS, we are witnessing improved communication within the scientific community, and anticipate increased taxonomic efficiency and quality control in marine biodiversity research and management.
Url:
DOI: 10.1371/journal.pone.0051629
PubMed: 23505408
PubMed Central: 3541386
Affiliations:
- Australie, Belgique, France, Nouvelle-Zélande, Pays-Bas, Royaume-Uni, Suède, États-Unis
- Angleterre, Grand Londres, Hollande-Méridionale, Svealand
- Leyde, Londres, Paris, Stockholm
Links toward previous steps (curation, corpus...)
Links to Exploration step
PMC:3541386Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>The World Register of Marine Species is an over 90% complete open-access inventory of all marine species names. Here we illustrate the scale of the problems with species names, synonyms, and their classification, and describe how WoRMS publishes online quality assured information on marine species.</p>
<p>Within WoRMS, over 100 global, 12 regional and 4 thematic species databases are integrated with a common taxonomy. Over 240 editors from 133 institutions and 31 countries manage the content. To avoid duplication of effort, content is exchanged with 10 external databases. At present WoRMS contains 460,000 taxonomic names (from Kingdom to subspecies), 368,000 species level combinations of which 215,000 are currently accepted marine species names, and 26,000 related but non-marine species. Associated information includes 150,000 literature sources, 20,000 images, and locations of 44,000 specimens. Usage has grown linearly since its launch in 2007, with about 600,000 unique visitors to the website in 2011, and at least 90 organisations from 12 countries using WoRMS for their data management.</p>
<p>By providing easy access to expert-validated content, WoRMS improves quality control in the use of species names, with consequent benefits to taxonomy, ecology, conservation and marine biodiversity research and management. The service manages information on species names that would otherwise be overly costly for individuals, and thus minimises errors in the application of nomenclature standards. WoRMS' content is expanding to include host-parasite relationships, additional literature sources, locations of specimens, images, distribution range, ecological, and biological data. Species are being categorised as introduced (alien, invasive), of conservation importance, and on other attributes. These developments have a multiplier effect on its potential as a resource for biodiversity research and management. As a consequence of WoRMS, we are witnessing improved communication within the scientific community, and anticipate increased taxonomic efficiency and quality control in marine biodiversity research and management.</p>
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</author>
<author><name sortKey="Halpin, Pn" uniqKey="Halpin P">PN Halpin</name>
</author>
<author><name sortKey="Ojaveer, H" uniqKey="Ojaveer H">H Ojaveer</name>
</author>
<author><name sortKey="Miloslavich, P" uniqKey="Miloslavich P">P Miloslavich</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gollner, S" uniqKey="Gollner S">S Gollner</name>
</author>
<author><name sortKey="Ivanenko, Vn" uniqKey="Ivanenko V">VN Ivanenko</name>
</author>
<author><name sortKey="Arbizu, Pm" uniqKey="Arbizu P">PM Arbizu</name>
</author>
<author><name sortKey="Bright, M" uniqKey="Bright M">M Bright</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Van Bruggen, Ac" uniqKey="Van Bruggen A">AC van Bruggen</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id>
<journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id>
<journal-title-group><journal-title>PLoS ONE</journal-title>
</journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher><publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">23505408</article-id>
<article-id pub-id-type="pmc">3541386</article-id>
<article-id pub-id-type="publisher-id">PONE-D-12-18478</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0051629</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Overview</subject>
</subj-group>
<subj-group subj-group-type="Discipline-v2"><subject>Biology</subject>
<subj-group><subject>Ecology</subject>
<subj-group><subject>Ecological Metrics</subject>
<subj-group><subject>Species Diversity</subject>
<subject>Species Richness</subject>
</subj-group>
</subj-group>
<subj-group><subject>Biodiversity</subject>
<subject>Biota</subject>
<subject>Biogeography</subject>
<subject>Ecosystems</subject>
<subject>Evolutionary Ecology</subject>
<subject>Macroecology</subject>
<subject>Marine Ecology</subject>
</subj-group>
</subj-group>
<subj-group><subject>Evolutionary Biology</subject>
<subj-group><subject>Evolutionary Systematics</subject>
</subj-group>
</subj-group>
<subj-group><subject>Marine Biology</subject>
<subj-group><subject>Coastal Ecology</subject>
<subject>Corals</subject>
<subject>Fisheries Science</subject>
<subject>Freshwater Ecology</subject>
<subject>Phycology</subject>
</subj-group>
</subj-group>
<subj-group><subject>Plant Science</subject>
<subj-group><subject>Plant Ecology</subject>
<subject>Plant Taxonomy</subject>
</subj-group>
</subj-group>
<subj-group><subject>Zoology</subject>
<subj-group><subject>Animal Taxonomy</subject>
<subject>Helminthology</subject>
</subj-group>
</subj-group>
</subj-group>
<subj-group subj-group-type="Discipline-v2"><subject>Computer Science</subject>
<subj-group><subject>Computing Systems</subject>
</subj-group>
<subj-group><subject>Information Technology</subject>
</subj-group>
</subj-group>
<subj-group subj-group-type="Discipline-v2"><subject>Veterinary Science</subject>
<subj-group><subject>Veterinary Informatics</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group><article-title>Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases</article-title>
<alt-title alt-title-type="running-head">The World Register of Marine Species</alt-title>
</title-group>
<contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Costello</surname>
<given-names>Mark J.</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup>
</xref>
<xref ref-type="corresp" rid="cor1"><sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Bouchet</surname>
<given-names>Philippe</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Boxshall</surname>
<given-names>Geoff</given-names>
</name>
<xref ref-type="aff" rid="aff3"><sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Fauchald</surname>
<given-names>Kristian</given-names>
</name>
<xref ref-type="aff" rid="aff4"><sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Gordon</surname>
<given-names>Dennis</given-names>
</name>
<xref ref-type="aff" rid="aff5"><sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Hoeksema</surname>
<given-names>Bert W.</given-names>
</name>
<xref ref-type="aff" rid="aff6"><sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Poore</surname>
<given-names>Gary C. B.</given-names>
</name>
<xref ref-type="aff" rid="aff7"><sup>7</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>van Soest</surname>
<given-names>Rob W. M.</given-names>
</name>
<xref ref-type="aff" rid="aff6"><sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Stöhr</surname>
<given-names>Sabine</given-names>
</name>
<xref ref-type="aff" rid="aff8"><sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Walter</surname>
<given-names>T. Chad</given-names>
</name>
<xref ref-type="aff" rid="aff4"><sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Vanhoorne</surname>
<given-names>Bart</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Decock</surname>
<given-names>Wim</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup>
</xref>
</contrib>
<contrib contrib-type="author" equal-contrib="yes"><name><surname>Appeltans</surname>
<given-names>Ward</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup>
</xref>
<xref ref-type="aff" rid="aff10"><sup>10</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1"><label>1</label>
<addr-line>Leigh Marine Laboratory, University of Auckland, Auckland, New Zealand</addr-line>
</aff>
<aff id="aff2"><label>2</label>
<addr-line>Muséum National d'Histoire Naturelle, Paris, France</addr-line>
</aff>
<aff id="aff3"><label>3</label>
<addr-line>The Natural History Museum, London, United Kingdom</addr-line>
</aff>
<aff id="aff4"><label>4</label>
<addr-line>Smithsonian Institution, Washington, District of Columbia, United States of America</addr-line>
</aff>
<aff id="aff5"><label>5</label>
<addr-line>Aquatic Biodiversity & Biosecurity, National Institute of Water & Atmospheric Research, Wellington, New Zealand</addr-line>
</aff>
<aff id="aff6"><label>6</label>
<addr-line>Naturalis Biodiversity Center, Leiden, The Netherlands</addr-line>
</aff>
<aff id="aff7"><label>7</label>
<addr-line>Museum Victoria, Melbourne, Victoria, Australia</addr-line>
</aff>
<aff id="aff8"><label>8</label>
<addr-line>Swedish Museum of Natural History; Department of Invertebrate Zoology, Stockholm, Sweden</addr-line>
</aff>
<aff id="aff9"><label>9</label>
<addr-line>Flanders Marine Institute, Ostend, Belgium</addr-line>
</aff>
<aff id="aff10"><label>10</label>
<addr-line>Intergovernmental Oceanographic Commission of UNESCO; IOC Project Office for IODE, Ostend, Belgium</addr-line>
</aff>
<contrib-group><contrib contrib-type="editor"><name><surname>Browman</surname>
<given-names>Howard</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1"><addr-line>Institute of Marine Research, Norway</addr-line>
</aff>
<author-notes><corresp id="cor1">* E-mail: <email>m.costello@auckland.ac.nz</email>
</corresp>
<fn fn-type="conflict"><p><bold>Competing Interests: </bold>
The authors have declared that no competing interests exist.</p>
</fn>
<fn fn-type="con"><p>Conceived and designed the experiments: MJC PB GB KF DG BWH GCBP RWMvS SS TCW BV WA. Analyzed the data: MJC BV WD WA. Wrote the paper: MJC PB GB KF DG BWH GCBP RWMvS SS TCW BV WD WA.</p>
</fn>
</author-notes>
<pub-date pub-type="collection"><year>2013</year>
</pub-date>
<pub-date pub-type="epub"><day>9</day>
<month>1</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="ecorrected"><day>5</day>
<month>3</month>
<year>2013</year>
</pub-date>
<volume>8</volume>
<issue>1</issue>
<elocation-id>e51629</elocation-id>
<history><date date-type="received"><day>23</day>
<month>6</month>
<year>2012</year>
</date>
<date date-type="accepted"><day>8</day>
<month>11</month>
<year>2012</year>
</date>
</history>
<permissions><copyright-year>2013</copyright-year>
<copyright-holder>Costello et al</copyright-holder>
<license><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<abstract><p>The World Register of Marine Species is an over 90% complete open-access inventory of all marine species names. Here we illustrate the scale of the problems with species names, synonyms, and their classification, and describe how WoRMS publishes online quality assured information on marine species.</p>
<p>Within WoRMS, over 100 global, 12 regional and 4 thematic species databases are integrated with a common taxonomy. Over 240 editors from 133 institutions and 31 countries manage the content. To avoid duplication of effort, content is exchanged with 10 external databases. At present WoRMS contains 460,000 taxonomic names (from Kingdom to subspecies), 368,000 species level combinations of which 215,000 are currently accepted marine species names, and 26,000 related but non-marine species. Associated information includes 150,000 literature sources, 20,000 images, and locations of 44,000 specimens. Usage has grown linearly since its launch in 2007, with about 600,000 unique visitors to the website in 2011, and at least 90 organisations from 12 countries using WoRMS for their data management.</p>
<p>By providing easy access to expert-validated content, WoRMS improves quality control in the use of species names, with consequent benefits to taxonomy, ecology, conservation and marine biodiversity research and management. The service manages information on species names that would otherwise be overly costly for individuals, and thus minimises errors in the application of nomenclature standards. WoRMS' content is expanding to include host-parasite relationships, additional literature sources, locations of specimens, images, distribution range, ecological, and biological data. Species are being categorised as introduced (alien, invasive), of conservation importance, and on other attributes. These developments have a multiplier effect on its potential as a resource for biodiversity research and management. As a consequence of WoRMS, we are witnessing improved communication within the scientific community, and anticipate increased taxonomic efficiency and quality control in marine biodiversity research and management.</p>
</abstract>
<funding-group><funding-statement>The development of WoRMS has benefited from major funding from the European commission research programme: FP4 Marine Science and Technology programme for ERMS(MAS3-CT97-0146), Species 2000 europa, FP6 Marine biodiversity and Ecosystem Function (MarBEF) network of excellence, FP6 PESI and FP7 4D4 life. Funding has also been provided by the National Science Foundation CORONA project, Ocean Biogeographic Information system, Census of Marine Life Synthesis project and Global Biodiversity Information Facility. SMEBD acknowledges financial contributions from Musee Cantonal de Zoologie (Switzerland);Universite Pierre & Marie Curie(France);School of computer Science & Statitics, Lloyds Institute; Trinity College, Dublin(Ireland), Academia Sinica, Biodiversity Research Centre (Taiwan); Future of Marine Animal Program, Department of Biological Sciences, Dalhousie University (Canada); and the University of Aucklan's Leigh Marine Laboratory (New Zealand). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement>
</funding-group>
<counts><page-count count="20"></page-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Australie</li>
<li>Belgique</li>
<li>France</li>
<li>Nouvelle-Zélande</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>Suède</li>
<li>États-Unis</li>
</country>
<region><li>Angleterre</li>
<li>Grand Londres</li>
<li>Hollande-Méridionale</li>
<li>Svealand</li>
</region>
<settlement><li>Leyde</li>
<li>Londres</li>
<li>Paris</li>
<li>Stockholm</li>
</settlement>
</list>
<tree><country name="Nouvelle-Zélande"><noRegion><name sortKey="Costello, Mark J" sort="Costello, Mark J" uniqKey="Costello M" first="Mark J." last="Costello">Mark J. Costello</name>
</noRegion>
<name sortKey="Gordon, Dennis" sort="Gordon, Dennis" uniqKey="Gordon D" first="Dennis" last="Gordon">Dennis Gordon</name>
</country>
<country name="France"><noRegion><name sortKey="Bouchet, Philippe" sort="Bouchet, Philippe" uniqKey="Bouchet P" first="Philippe" last="Bouchet">Philippe Bouchet</name>
</noRegion>
</country>
<country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Boxshall, Geoff" sort="Boxshall, Geoff" uniqKey="Boxshall G" first="Geoff" last="Boxshall">Geoff Boxshall</name>
</region>
</country>
<country name="États-Unis"><noRegion><name sortKey="Fauchald, Kristian" sort="Fauchald, Kristian" uniqKey="Fauchald K" first="Kristian" last="Fauchald">Kristian Fauchald</name>
</noRegion>
<name sortKey="Walter, T Chad" sort="Walter, T Chad" uniqKey="Walter T" first="T. Chad" last="Walter">T. Chad Walter</name>
</country>
<country name="Pays-Bas"><region name="Hollande-Méridionale"><name sortKey="Hoeksema, Bert W" sort="Hoeksema, Bert W" uniqKey="Hoeksema B" first="Bert W." last="Hoeksema">Bert W. Hoeksema</name>
</region>
<name sortKey="Van Soest, Rob W M" sort="Van Soest, Rob W M" uniqKey="Van Soest R" first="Rob W. M." last="Van Soest">Rob W. M. Van Soest</name>
</country>
<country name="Australie"><noRegion><name sortKey="Poore, Gary C B" sort="Poore, Gary C B" uniqKey="Poore G" first="Gary C. B." last="Poore">Gary C. B. Poore</name>
</noRegion>
</country>
<country name="Suède"><region name="Svealand"><name sortKey="Stohr, Sabine" sort="Stohr, Sabine" uniqKey="Stohr S" first="Sabine" last="Stöhr">Sabine Stöhr</name>
</region>
</country>
<country name="Belgique"><noRegion><name sortKey="Vanhoorne, Bart" sort="Vanhoorne, Bart" uniqKey="Vanhoorne B" first="Bart" last="Vanhoorne">Bart Vanhoorne</name>
</noRegion>
<name sortKey="Appeltans, Ward" sort="Appeltans, Ward" uniqKey="Appeltans W" first="Ward" last="Appeltans">Ward Appeltans</name>
<name sortKey="Appeltans, Ward" sort="Appeltans, Ward" uniqKey="Appeltans W" first="Ward" last="Appeltans">Ward Appeltans</name>
<name sortKey="Decock, Wim" sort="Decock, Wim" uniqKey="Decock W" first="Wim" last="Decock">Wim Decock</name>
</country>
</tree>
</affiliations>
</record>
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