WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.
Identifieur interne : 000100 ( Main/Exploration ); précédent : 000099; suivant : 000101WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.
Auteurs : Jacinte Beerten [Royaume-Uni] ; Joost Van Durme [Royaume-Uni] ; Rodrigo Gallardo [Royaume-Uni] ; Emidio Capriotti [Royaume-Uni] ; Louise Serpell [Royaume-Uni] ; Frederic Rousseau [Royaume-Uni] ; Joost Schymkowitz [Royaume-Uni]Source :
- Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Amyloid, Oligopeptides.
- chemical , ultrastructure : Amyloid.
- Algorithms, Amino Acid Sequence, Databases, Protein.
Abstract
Accurate prediction of amyloid-forming amino acid sequences remains an important challenge. We here present an online database that provides open access to the largest set of experimentally characterized amyloid forming hexapeptides. To this end, we expanded our previous set of 280 hexapeptides used to develop the Waltz algorithm with 89 peptides from literature review and by systematic experimental characterisation of the aggregation of 720 hexapeptides by transmission electron microscopy, dye binding and Fourier transform infrared spectroscopy. This brings the total number of experimentally characterized hexapeptides in the WALTZ-DB database to 1089, of which 244 are annotated as positive for amyloid formation.
DOI: 10.1093/bioinformatics/btv027
PubMed: 25600945
Affiliations:
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Le document en format XML
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<front><div type="abstract" xml:lang="en">Accurate prediction of amyloid-forming amino acid sequences remains an important challenge. We here present an online database that provides open access to the largest set of experimentally characterized amyloid forming hexapeptides. To this end, we expanded our previous set of 280 hexapeptides used to develop the Waltz algorithm with 89 peptides from literature review and by systematic experimental characterisation of the aggregation of 720 hexapeptides by transmission electron microscopy, dye binding and Fourier transform infrared spectroscopy. This brings the total number of experimentally characterized hexapeptides in the WALTZ-DB database to 1089, of which 244 are annotated as positive for amyloid formation.</div>
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<tree><country name="Royaume-Uni"><noRegion><name sortKey="Beerten, Jacinte" sort="Beerten, Jacinte" uniqKey="Beerten J" first="Jacinte" last="Beerten">Jacinte Beerten</name>
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<name sortKey="Capriotti, Emidio" sort="Capriotti, Emidio" uniqKey="Capriotti E" first="Emidio" last="Capriotti">Emidio Capriotti</name>
<name sortKey="Gallardo, Rodrigo" sort="Gallardo, Rodrigo" uniqKey="Gallardo R" first="Rodrigo" last="Gallardo">Rodrigo Gallardo</name>
<name sortKey="Rousseau, Frederic" sort="Rousseau, Frederic" uniqKey="Rousseau F" first="Frederic" last="Rousseau">Frederic Rousseau</name>
<name sortKey="Schymkowitz, Joost" sort="Schymkowitz, Joost" uniqKey="Schymkowitz J" first="Joost" last="Schymkowitz">Joost Schymkowitz</name>
<name sortKey="Serpell, Louise" sort="Serpell, Louise" uniqKey="Serpell L" first="Louise" last="Serpell">Louise Serpell</name>
<name sortKey="Van Durme, Joost" sort="Van Durme, Joost" uniqKey="Van Durme J" first="Joost" last="Van Durme">Joost Van Durme</name>
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</affiliations>
</record>
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