Best practices in bioinformatics training for life scientists
Identifieur interne : 000334 ( Main/Curation ); précédent : 000333; suivant : 000335Best practices in bioinformatics training for life scientists
Auteurs : Allegra Via ; Thomas Blicher ; Erik Bongcam-Rudloff ; Michelle D. Brazas ; Cath Brooksbank ; Aidan Budd ; Javier De Las Rivas ; Jacqueline Dreyer ; Pedro L. Fernandes ; Celia Van Gelder ; Joachim Jacob ; Rafael C. Jimenez ; Jane Loveland ; Federico Moran ; Nicola Mulder ; Tommi Nyrönen ; Kristian Rother ; Maria Victoria Schneider ; Teresa K. AttwoodSource :
- Briefings in Bioinformatics [ 1467-5463 ] ; 2013.
Abstract
The mountains of data thrusting from the new landscape of modern high-throughput biology are irrevocably changing biomedical research and creating a near-insatiable demand for training in data management and manipulation and data mining and analysis. Among life scientists, from clinicians to environmental researchers, a common theme is the need not just to use, and gain familiarity with, bioinformatics tools and resources but also to understand their underlying fundamental theoretical and practical concepts. Providing bioinformatics training to empower life scientists to handle and analyse their data efficiently, and progress their research, is a challenge across the globe. Delivering good training goes beyond traditional lectures and resource-centric demos, using interactivity, problem-solving exercises and cooperative learning to substantially enhance training quality and learning outcomes. In this context, this article discusses various pragmatic criteria for identifying training needs and learning objectives, for selecting suitable trainees and trainers, for developing and maintaining training skills and evaluating training quality. Adherence to these criteria may help not only to guide course organizers and trainers on the path towards bioinformatics training excellence but, importantly, also to improve the training experience for life scientists.
Url:
DOI: 10.1093/bib/bbt043
PubMed: 23803301
PubMed Central: 3771230
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Brazas</name></author><author><name sortKey="Brooksbank, Cath" sort="Brooksbank, Cath" uniqKey="Brooksbank C" first="Cath" last="Brooksbank">Cath Brooksbank</name></author><author><name sortKey="Budd, Aidan" sort="Budd, Aidan" uniqKey="Budd A" first="Aidan" last="Budd">Aidan Budd</name></author><author><name sortKey="De Las Rivas, Javier" sort="De Las Rivas, Javier" uniqKey="De Las Rivas J" first="Javier" last="De Las Rivas">Javier De Las Rivas</name></author><author><name sortKey="Dreyer, Jacqueline" sort="Dreyer, Jacqueline" uniqKey="Dreyer J" first="Jacqueline" last="Dreyer">Jacqueline Dreyer</name></author><author><name sortKey="Fernandes, Pedro L" sort="Fernandes, Pedro L" uniqKey="Fernandes P" first="Pedro L." last="Fernandes">Pedro L. Fernandes</name></author><author><name sortKey="Van Gelder, Celia" sort="Van Gelder, Celia" uniqKey="Van Gelder C" first="Celia" last="Van Gelder">Celia Van Gelder</name></author><author><name sortKey="Jacob, Joachim" sort="Jacob, Joachim" uniqKey="Jacob J" first="Joachim" last="Jacob">Joachim Jacob</name></author><author><name sortKey="Jimenez, Rafael C" sort="Jimenez, Rafael C" uniqKey="Jimenez R" first="Rafael C." last="Jimenez">Rafael C. 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Attwood</name></author></analytic><series><title level="j">Briefings in Bioinformatics</title><idno type="ISSN">1467-5463</idno><idno type="eISSN">1477-4054</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The mountains of data thrusting from the new landscape of modern high-throughput biology are irrevocably changing biomedical research and creating a near-insatiable demand for training in data management and manipulation and data mining and analysis. Among life scientists, from clinicians to environmental researchers, a common theme is the need not just to use, and gain familiarity with, bioinformatics tools and resources but also to understand their underlying fundamental theoretical and practical concepts. Providing bioinformatics training to empower life scientists to handle and analyse their data efficiently, and progress their research, is a challenge across the globe. Delivering good training goes beyond traditional lectures and resource-centric demos, using interactivity, problem-solving exercises and cooperative learning to substantially enhance training quality and learning outcomes. In this context, this article discusses various pragmatic criteria for identifying training needs and learning objectives, for selecting suitable trainees and trainers, for developing and maintaining training skills and evaluating training quality. Adherence to these criteria may help not only to guide course organizers and trainers on the path towards bioinformatics training excellence but, importantly, also to improve the training experience for life scientists.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Stoehr, Pj" uniqKey="Stoehr P">PJ Stoehr</name></author><author><name sortKey="Cameron, Gn" uniqKey="Cameron G">GN Cameron</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Attwood, Tk" uniqKey="Attwood T">TK Attwood</name></author><author><name sortKey="Gisel, A" uniqKey="Gisel A">A Gisel</name></author><author><name sortKey="Eriksson, Ne" uniqKey="Eriksson N">NE Eriksson</name></author><author><name sortKey="Bongcam Rudloff, E" uniqKey="Bongcam Rudloff E">E Bongcam-Rudloff</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mccahill, Mp" uniqKey="Mccahill M">MP McCahill</name></author><author><name sortKey="Anklesaria, Fx" uniqKey="Anklesaria F">FX Anklesaria</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lehvaslaiho, H" uniqKey="Lehvaslaiho H">H Lehvaslaiho</name></author><author><name sortKey="Harper, R" uniqKey="Harper R">R Harper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deutsch, P" uniqKey="Deutsch P">P Deutsch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Doelz, R" uniqKey="Doelz R">R Doelz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kell, Db" uniqKey="Kell D">DB Kell</name></author><author><name sortKey="Oliver, Sg" uniqKey="Oliver S">SG Oliver</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schneider, Mv" uniqKey="Schneider M">MV Schneider</name></author><author><name sortKey="Walter, P" uniqKey="Walter P">P Walter</name></author><author><name sortKey="Blatter, Mc" uniqKey="Blatter M">MC Blatter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schneider, Mv" uniqKey="Schneider M">MV Schneider</name></author><author><name sortKey="Watson, J" uniqKey="Watson J">J Watson</name></author><author><name sortKey="Attwood, T" uniqKey="Attwood T">T Attwood</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Via, A" uniqKey="Via A">A Via</name></author><author><name sortKey="De Las Rivas, J" uniqKey="De Las Rivas J">J De Las Rivas</name></author><author><name sortKey="Attwood, Tk" uniqKey="Attwood T">TK Attwood</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Schneider, Mv" uniqKey="Schneider M">MV Schneider</name></author><author><name sortKey="Jimenez, Rc" uniqKey="Jimenez R">RC Jimenez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pevzner, Pa" uniqKey="Pevzner P">PA Pevzner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bloom, Bs" uniqKey="Bloom B">BS Bloom</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fernandes, P" uniqKey="Fernandes P">P Fernandes</name></author><author><name sortKey="Jain, P" uniqKey="Jain P">P Jain</name></author><author><name sortKey="Moita, C" uniqKey="Moita C">C Moita</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Beck, K" uniqKey="Beck K">K Beck</name></author><author><name sortKey="Beedle, M" uniqKey="Beedle M">M Beedle</name></author><author><name sortKey="Bennekum, A" uniqKey="Bennekum A">A Bennekum</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amfahr, J" uniqKey="Amfahr J">J Amfahr</name></author><author><name sortKey="Bustamante, A" uniqKey="Bustamante A">A Bustamante</name></author><author><name sortKey="Rome, P" uniqKey="Rome P">P Rome</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kane, Dw" uniqKey="Kane D">DW Kane</name></author><author><name sortKey="Hohman, Mm" uniqKey="Hohman M">MM Hohman</name></author><author><name sortKey="Cerami, Eg" uniqKey="Cerami E">EG Cerami</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wilson, G" uniqKey="Wilson G">G Wilson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="O Ullivan, B" uniqKey="O Ullivan B">B O’Sullivan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rother, K" uniqKey="Rother K">K Rother</name></author><author><name sortKey="Potrzebowski, W" uniqKey="Potrzebowski W">W Potrzebowski</name></author><author><name sortKey="Puton, T" uniqKey="Puton T">T Puton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zeller, A" uniqKey="Zeller A">A Zeller</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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