Structuring Strain Data for Storage and Retrieval of Information on Bacteria in MINE, the Microbial Information Network Europe
Identifieur interne : 001015 ( Istex/Corpus ); précédent : 001014; suivant : 001016Structuring Strain Data for Storage and Retrieval of Information on Bacteria in MINE, the Microbial Information Network Europe
Auteurs : J. A. Stalpers ; M. Kracht ; D. Janssens ; J. De Ley ; J. Van Der Toorn ; J. Smith ; D. Claus ; H. HippeSource :
- Systematic and Applied Microbiology [ 0723-2020 ] ; 1990.
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Abstract
Summary: A number of major European culture collections, supported by the “Biotechnology Action Programme” (BAP) of the European Community (EC) are involved in the establishment of the multinational “Microbial Information Network Europe” (MINE). It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.The format for bacteria is different to that previously published for fungi and yeasts (Gams et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. Five thesaurus files are envisaged to ensure consistency.
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DOI: 10.1016/S0723-2020(11)80185-2
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De Ley</name><affiliation><mods:affiliation>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</mods:affiliation></affiliation></author><author><name sortKey="Van Der Toorn, J" sort="Van Der Toorn, J" uniqKey="Van Der Toorn J" first="J." last="Van Der Toorn">J. Van Der Toorn</name><affiliation><mods:affiliation>Laboratorium voor Microbiologie, Technische Universiteit, 2628 BC Delft, The Netherlands</mods:affiliation></affiliation></author><author><name sortKey="Smith, J" sort="Smith, J" uniqKey="Smith J" first="J." last="Smith">J. Smith</name><affiliation><mods:affiliation>University of Amsterdam, Department for Medical Informatics, Academic Medical Centre, 1105 AZ Amsterdam, The Netherlands</mods:affiliation></affiliation></author><author><name sortKey="Claus, D" sort="Claus, D" uniqKey="Claus D" first="D." last="Claus">D. 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Hippe</name><affiliation><mods:affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Systematic and Applied Microbiology</title><title level="j" type="abbrev">SYAPM</title><idno type="ISSN">0723-2020</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1990">1990</date><biblScope unit="volume">13</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="92">92</biblScope><biblScope unit="page" to="103">103</biblScope></imprint><idno type="ISSN">0723-2020</idno></series><idno type="istex">6AC9FE28CB80B70AC39558A756A62B6399D24B5E</idno><idno type="DOI">10.1016/S0723-2020(11)80185-2</idno><idno type="PII">S0723-2020(11)80185-2</idno><idno type="ArticleID">80185</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0723-2020</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria</term><term>Bioinformatics</term><term>Format</term></keywords></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Summary: A number of major European culture collections, supported by the “Biotechnology Action Programme” (BAP) of the European Community (EC) are involved in the establishment of the multinational “Microbial Information Network Europe” (MINE). It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.The format for bacteria is different to that previously published for fungi and yeasts (Gams et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. Five thesaurus files are envisaged to ensure consistency.</div></front></TEI><istex><corpusName>elsevier</corpusName><author><json:item><name>J.A. 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It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.The format for bacteria is different to that previously published for fungi and yeasts (Gams et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. 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A. Stalpers, Centraalbureau voor Schimmelcultures, P.O. Box 273, 3740 AG Baarn, The Netherlands</affiliation></author><author xml:id="author-2"><persName><forename type="first">M.</forename><surname>Kracht</surname></persName><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation></author><author xml:id="author-3"><persName><forename type="first">D.</forename><surname>Janssens</surname></persName><affiliation>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</affiliation></author><author xml:id="author-4"><persName><forename type="first">J.</forename><surname>De Ley</surname></persName><affiliation>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</affiliation></author><author xml:id="author-5"><persName><forename type="first">J.</forename><surname>Van Der Toorn</surname></persName><affiliation>Laboratorium voor Microbiologie, Technische Universiteit, 2628 BC Delft, The Netherlands</affiliation></author><author xml:id="author-6"><persName><forename type="first">J.</forename><surname>Smith</surname></persName><affiliation>University of Amsterdam, Department for Medical Informatics, Academic Medical Centre, 1105 AZ Amsterdam, The Netherlands</affiliation></author><author xml:id="author-7"><persName><forename type="first">D.</forename><surname>Claus</surname></persName><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation></author><author xml:id="author-8"><persName><forename type="first">H.</forename><surname>Hippe</surname></persName><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation></author></analytic><monogr><title level="j">Systematic and Applied Microbiology</title><title level="j" type="abbrev">SYAPM</title><idno type="pISSN">0723-2020</idno><idno type="PII">S0723-2020(11)X8171-7</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1990"></date><biblScope unit="volume">13</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="92">92</biblScope><biblScope unit="page" to="103">103</biblScope></imprint></monogr><idno type="istex">6AC9FE28CB80B70AC39558A756A62B6399D24B5E</idno><idno type="DOI">10.1016/S0723-2020(11)80185-2</idno><idno type="PII">S0723-2020(11)80185-2</idno><idno type="ArticleID">80185</idno></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>1990</date></creation><langUsage><language ident="en">en</language></langUsage><abstract xml:lang="en"><p>Summary: A number of major European culture collections, supported by the “Biotechnology Action Programme” (BAP) of the European Community (EC) are involved in the establishment of the multinational “Microbial Information Network Europe” (MINE). It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.The format for bacteria is different to that previously published for fungi and yeasts (Gams et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. Five thesaurus files are envisaged to ensure consistency.</p></abstract><textClass xml:lang="en"><keywords scheme="keyword"><list><head>Key words</head><item><term>Bioinformatics</term></item><item><term>Bacteria</term></item><item><term>Format</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="1990">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><original>false</original><mimetype>text/plain</mimetype><extension>txt</extension><uri>https://api.istex.fr/document/6AC9FE28CB80B70AC39558A756A62B6399D24B5E/fulltext/txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Elsevier doc found" wicri:toSee="Elsevier, no converted or simple article"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" </istex:xmlDeclaration><istex:docType PUBLIC="-//ES//DTD journal article DTD version 5.1.0//EN//XML" URI="art510.dtd" name="istex:docType"></istex:docType><istex:document><article version="5.1" xml:lang="en" docsubtype="fla"><item-info><jid>SYAPM</jid><aid>80185</aid><ce:pii>S0723-2020(11)80185-2</ce:pii><ce:doi>10.1016/S0723-2020(11)80185-2</ce:doi><ce:copyright type="other" year="1990">Gustav Fischer Verlag, Stuttgart · New York</ce:copyright></item-info><head><ce:article-footnote><ce:label>*</ce:label><ce:note-para>MINE Technical Communication No. III</ce:note-para></ce:article-footnote><ce:title>Structuring Strain Data for Storage and Retrieval of Information on Bacteria in MINE, the Microbial Information Network Europe</ce:title><ce:author-group><ce:author><ce:given-name>J.A.</ce:given-name><ce:surname>Stalpers</ce:surname><ce:cross-ref refid="aff1"><ce:sup>1</ce:sup></ce:cross-ref><ce:cross-ref refid="fn1"><ce:sup>1</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>M.</ce:given-name><ce:surname>Kracht</ce:surname><ce:cross-ref refid="aff2"><ce:sup>2</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>D.</ce:given-name><ce:surname>Janssens</ce:surname><ce:cross-ref refid="aff3"><ce:sup>3</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>J.</ce:given-name><ce:surname>De Ley</ce:surname><ce:cross-ref refid="aff3"><ce:sup>3</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>J.</ce:given-name><ce:surname>Van Der Toorn</ce:surname><ce:cross-ref refid="aff4"><ce:sup>4</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>J.</ce:given-name><ce:surname>Smith</ce:surname><ce:cross-ref refid="aff5"><ce:sup>5</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>D.</ce:given-name><ce:surname>Claus</ce:surname><ce:cross-ref refid="aff2"><ce:sup>2</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>H.</ce:given-name><ce:surname>Hippe</ce:surname><ce:cross-ref refid="aff2"><ce:sup>2</ce:sup></ce:cross-ref></ce:author><ce:affiliation id="aff1"><ce:label>1</ce:label><ce:textfn>Centraalbureau voor Schimmelcultures, 3740 AG Baarn, The Netherlands</ce:textfn></ce:affiliation><ce:affiliation id="aff2"><ce:label>2</ce:label><ce:textfn>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</ce:textfn></ce:affiliation><ce:affiliation id="aff3"><ce:label>3</ce:label><ce:textfn>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</ce:textfn></ce:affiliation><ce:affiliation id="aff4"><ce:label>4</ce:label><ce:textfn>Laboratorium voor Microbiologie, Technische Universiteit, 2628 BC Delft, The Netherlands</ce:textfn></ce:affiliation><ce:affiliation id="aff5"><ce:label>5</ce:label><ce:textfn>University of Amsterdam, Department for Medical Informatics, Academic Medical Centre, 1105 AZ Amsterdam, The Netherlands</ce:textfn></ce:affiliation><ce:footnote id="fn1"><ce:label>1</ce:label><ce:note-para>Dr. <ce:italic>J. A. Stalpers</ce:italic>, Centraalbureau voor Schimmelcultures, P.O. Box 273, 3740 AG Baarn, The Netherlands</ce:note-para></ce:footnote></ce:author-group><ce:date-received day="14" month="10" year="1989"></ce:date-received><ce:abstract id="ab1" xml:lang="en"><ce:section-title>Summary</ce:section-title><ce:abstract-sec><ce:simple-para id="SP0005">A number of major European culture collections, supported by the “Biotechnology Action Programme” (BAP) of the European Community (EC) are involved in the establishment of the multinational “Microbial Information Network Europe” (MINE). It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.</ce:simple-para><ce:simple-para id="SP0010">The format for bacteria is different to that previously published for fungi and yeasts (<ce:italic>Gams</ce:italic> et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.</ce:simple-para><ce:simple-para id="SP0015">Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. Five thesaurus files are envisaged to ensure consistency.</ce:simple-para></ce:abstract-sec></ce:abstract><ce:keywords class="keyword"><ce:section-title>Key words</ce:section-title><ce:keyword><ce:text>Bioinformatics</ce:text></ce:keyword><ce:keyword><ce:text>Bacteria</ce:text></ce:keyword><ce:keyword><ce:text>Format</ce:text></ce:keyword></ce:keywords></head><tail><ce:bibliography id="R0005"><ce:section-title>References</ce:section-title><ce:bibliography-sec id="RS0005"><ce:bib-reference id="bib1"><ce:label>Environmental Resources Ltd., 1984</ce:label><sb:reference><sb:contribution><sb:authors><sb:collaboration>Environmental Resources Ltd.</sb:collaboration></sb:authors><sb:title><sb:maintitle>EEC Information System for microorganisms</sb:maintitle></sb:title></sb:contribution><sb:host><sb:issue><sb:series><sb:title><sb:maintitle>Report prepared for the Commission of the European Communities</sb:maintitle></sb:title></sb:series><sb:date>1984</sb:date></sb:issue></sb:host></sb:reference></ce:bib-reference><ce:bib-reference id="bib2"><ce:label>Enzyme Nomenclature, 1984</ce:label><sb:reference><sb:contribution><sb:authors><sb:collaboration>Enzyme Nomenclature</sb:collaboration></sb:authors></sb:contribution><sb:host><sb:book><sb:title><sb:maintitle>Recommendations (1984) of the Nomenclature Committee of the International Union of Biochemistry</sb:maintitle></sb:title><sb:date>1984</sb:date><sb:publisher><sb:name>Academic Press</sb:name><sb:location>Orlando</sb:location></sb:publisher></sb:book></sb:host></sb:reference></ce:bib-reference><ce:bib-reference id="bib3"><ce:label>Gams et al., 1988</ce:label><sb:reference><sb:contribution><sb:authors><sb:author><ce:given-name>W.</ce:given-name><ce:surname>Gams</ce:surname></sb:author><sb:author><ce:given-name>G.L.</ce:given-name><ce:surname>Hennebert</ce:surname></sb:author><sb:author><ce:given-name>J.A.</ce:given-name><ce:surname>Stalpers</ce:surname></sb:author><sb:author><ce:given-name>D.</ce:given-name><ce:surname>Janssens</ce:surname></sb:author><sb:author><ce:given-name>M.A.A.</ce:given-name><ce:surname>Schipper</ce:surname></sb:author><sb:author><ce:given-name>J.</ce:given-name><ce:surname>Smith</ce:surname></sb:author><sb:author><ce:given-name>D.</ce:given-name><ce:surname>Yarrow</ce:surname></sb:author></sb:authors><sb:title><sb:maintitle>Structuring strain data for storage and retrieval of information on fungi and yeasts in MINE, the Microbial Information Network Europe</sb:maintitle></sb:title></sb:contribution><sb:host><sb:issue><sb:series><sb:title><sb:maintitle>J. Gen. Microbiol.</sb:maintitle></sb:title><sb:volume-nr>134</sb:volume-nr></sb:series><sb:date>1988</sb:date></sb:issue><sb:pages><sb:first-page>1667</sb:first-page><sb:last-page>1689</sb:last-page></sb:pages></sb:host></sb:reference></ce:bib-reference><ce:bib-reference id="bib4"><ce:label>McGowan and Sherman, 1982</ce:label><sb:reference><sb:host><sb:edited-book><sb:editors><sb:editor><ce:given-name>V.F.</ce:given-name><ce:surname>McGowan</ce:surname></sb:editor><sb:editor><ce:given-name>V.B.D.</ce:given-name><ce:surname>Sherman</ce:surname></sb:editor></sb:editors><sb:title><sb:maintitle>World Directory of Collections of Cultures of Microorganisms</sb:maintitle></sb:title><sb:edition>2nd ed.</sb:edition><sb:date>1982</sb:date><sb:publisher><sb:name>Brisbane</sb:name></sb:publisher></sb:edited-book></sb:host></sb:reference></ce:bib-reference><ce:bib-reference id="bib5"><ce:label>Pridham, 1981</ce:label><sb:reference><sb:contribution><sb:authors><sb:author><ce:given-name>T.G.</ce:given-name><ce:surname>Pridham</ce:surname></sb:author></sb:authors><sb:title><sb:maintitle>Micro-organism culture collections: acronyms and abbreviations</sb:maintitle></sb:title></sb:contribution><sb:host><sb:edited-book><sb:title><sb:maintitle>Agricultural Reviews and Manuals ARM-NC-14</sb:maintitle></sb:title><sb:date>1981</sb:date><sb:publisher><sb:name>Agriculture Peoria, U.S. Dept.</sb:name></sb:publisher></sb:edited-book></sb:host></sb:reference></ce:bib-reference></ce:bibliography-sec></ce:bibliography></tail></article></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Structuring Strain Data for Storage and Retrieval of Information on Bacteria in MINE, the Microbial Information Network Europe</title></titleInfo><titleInfo type="alternative" lang="en" contentType="CDATA"><title>Structuring Strain Data for Storage and Retrieval of Information on Bacteria in MINE, the Microbial Information Network Europe</title></titleInfo><name type="personal"><namePart type="given">J.A.</namePart><namePart type="family">Stalpers</namePart><affiliation>Centraalbureau voor Schimmelcultures, 3740 AG Baarn, The Netherlands</affiliation><affiliation>1Dr. J. A. Stalpers, Centraalbureau voor Schimmelcultures, P.O. Box 273, 3740 AG Baarn, The Netherlands</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">M.</namePart><namePart type="family">Kracht</namePart><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">D.</namePart><namePart type="family">Janssens</namePart><affiliation>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.</namePart><namePart type="family">De Ley</namePart><affiliation>Laboratorium voor Microbiologie en Microbiële Genetica, 9000 Gent, Belgium</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.</namePart><namePart type="family">Van Der Toorn</namePart><affiliation>Laboratorium voor Microbiologie, Technische Universiteit, 2628 BC Delft, The Netherlands</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.</namePart><namePart type="family">Smith</namePart><affiliation>University of Amsterdam, Department for Medical Informatics, Academic Medical Centre, 1105 AZ Amsterdam, The Netherlands</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">D.</namePart><namePart type="family">Claus</namePart><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">H.</namePart><namePart type="family">Hippe</namePart><affiliation>DSM - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 3300 Braunschweig, Federal Republic of Germany</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="research-article" displayLabel="Full-length article"></genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1990</dateIssued><copyrightDate encoding="w3cdtf">1990</copyrightDate></originInfo><language><languageTerm type="code" authority="iso639-2b">eng</languageTerm><languageTerm type="code" authority="rfc3066">en</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Summary: A number of major European culture collections, supported by the “Biotechnology Action Programme” (BAP) of the European Community (EC) are involved in the establishment of the multinational “Microbial Information Network Europe” (MINE). It has been realized that the adoption of a uniform format for computer storage and retrieval of strain data is essential, considering that it is the scope of the project to allow the electronic combination of data from different collections, and thus facilitate the publication of integrated catalogues or searching different databases using common commands.The format for bacteria is different to that previously published for fungi and yeasts (Gams et al., 1988) in several important respects, largely relating to the differences in cytological properties and taxonomic treatment. In addition to the main data set, “species records”, two other data sets, “strain records” and “synonym records” may be linked together. A minimum data set of 24 fields (similar to the fields used in catalogue production) is defined which facilitates the exchange of data between the national nodes and serves as a directory to strains available at other nodes. A total of 133 fields are proposed that can be grouped in the following ten blocks: internal administration - name - strain administration -environment and history - properties (cytological, biomolecular data) - mutants, plasmids, and phages - growth conditions - chemistry and enzymes - biological interactions - practical applications.Several fields are to be divided into subfields at different ranks. Delimiters are used to either separate a range of entries that are to be indexed or to divide an entry from the reference to its source or remarks that are not to be indexed. In this paper the contents and structure of the fields proposed for bacteria are characterized and often illustrated by examples. Uniformity of input is essential for indexed fields and desirable for non-indexed fields. Five thesaurus files are envisaged to ensure consistency.</abstract><note>MINE Technical Communication No. III</note><subject lang="en"><genre>Key words</genre><topic>Bioinformatics</topic><topic>Bacteria</topic><topic>Format</topic></subject><relatedItem type="host"><titleInfo><title>Systematic and Applied Microbiology</title></titleInfo><titleInfo type="abbreviated"><title>SYAPM</title></titleInfo><genre type="journal">journal</genre><originInfo><dateIssued encoding="w3cdtf">199003</dateIssued></originInfo><identifier type="ISSN">0723-2020</identifier><identifier type="PII">S0723-2020(11)X8171-7</identifier><part><date>199003</date><detail type="volume"><number>13</number><caption>vol.</caption></detail><detail type="issue"><number>1</number><caption>no.</caption></detail><extent unit="issue pages"><start>1</start><end>103</end></extent><extent unit="pages"><start>92</start><end>103</end></extent></part></relatedItem><identifier type="istex">6AC9FE28CB80B70AC39558A756A62B6399D24B5E</identifier><identifier type="DOI">10.1016/S0723-2020(11)80185-2</identifier><identifier type="PII">S0723-2020(11)80185-2</identifier><identifier type="ArticleID">80185</identifier><accessCondition type="use and reproduction" contentType="copyright">©1990 Gustav Fischer Verlag, Stuttgart · New York</accessCondition><recordInfo><recordContentSource>ELSEVIER</recordContentSource><recordOrigin>Gustav Fischer Verlag, Stuttgart · New York, ©1990</recordOrigin></recordInfo></mods></metadata><enrichments><istex:catWosTEI uri="https://api.istex.fr/document/6AC9FE28CB80B70AC39558A756A62B6399D24B5E/enrichments/catWos"><teiHeader><profileDesc><textClass><classCode scheme="WOS">BIOTECHNOLOGY & APPLIED MICROBIOLOGY</classCode><classCode scheme="WOS">MICROBIOLOGY</classCode></textClass></profileDesc></teiHeader></istex:catWosTEI></enrichments><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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