OcrV1, PubMed, Curation, bibRecord, 000044

Figure mining for biomedical research.

Identifieur interne : 000044 ( PubMed/Curation ); précédent : 000043; suivant : 000045

Figure mining for biomedical research.

Auteurs : Raul Rodriguez-Esteban [États-Unis] ; Ivan Iossifov

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2009.

RBID : pubmed:19439564

English descriptors

KwdEn :
- Abstracting and Indexing as Topic (methods), Biomedical Research, Computational Biology (methods), Data Mining (methods), Pattern Recognition, Automated (methods).
MESH :
- methods : Abstracting and Indexing as Topic, Computational Biology, Data Mining, Pattern Recognition, Automated.
- Biomedical Research.

Abstract

Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types.

DOI: 10.1093/bioinformatics/btp318
PubMed: 19439564

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pubmed:19439564

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Figure mining for biomedical research.</title>
<author><name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name>
<affiliation wicri:level="1"><nlm:affiliation>Systems Biology, Pfizer Inc., Cambridge, MA 02139, USA. raul.rodriguez-esteban@pfizer.com</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Systems Biology, Pfizer Inc., Cambridge, MA 02139</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Iossifov, Ivan" sort="Iossifov, Ivan" uniqKey="Iossifov I" first="Ivan" last="Iossifov">Ivan Iossifov</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2009">2009</date>
<idno type="doi">10.1093/bioinformatics/btp318</idno>
<idno type="RBID">pubmed:19439564</idno>
<idno type="pmid">19439564</idno>
<idno type="wicri:Area/PubMed/Corpus">000044</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Figure mining for biomedical research.</title>
<author><name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name>
<affiliation wicri:level="1"><nlm:affiliation>Systems Biology, Pfizer Inc., Cambridge, MA 02139, USA. raul.rodriguez-esteban@pfizer.com</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Systems Biology, Pfizer Inc., Cambridge, MA 02139</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Iossifov, Ivan" sort="Iossifov, Ivan" uniqKey="Iossifov I" first="Ivan" last="Iossifov">Ivan Iossifov</name>
</author>
</analytic>
<series><title level="j">Bioinformatics (Oxford, England)</title>
<idno type="eISSN">1367-4811</idno>
<imprint><date when="2009" type="published">2009</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Abstracting and Indexing as Topic (methods)</term>
<term>Biomedical Research</term>
<term>Computational Biology (methods)</term>
<term>Data Mining (methods)</term>
<term>Pattern Recognition, Automated (methods)</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Abstracting and Indexing as Topic</term>
<term>Computational Biology</term>
<term>Data Mining</term>
<term>Pattern Recognition, Automated</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biomedical Research</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types.</div>
</front>
</TEI>
<pubmed><MedlineCitation Owner="NLM" Status="MEDLINE"><PMID Version="1">19439564</PMID>
<DateCreated><Year>2009</Year>
<Month>08</Month>
<Day>11</Day>
</DateCreated>
<DateCompleted><Year>2010</Year>
<Month>01</Month>
<Day>14</Day>
</DateCompleted>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1367-4811</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>25</Volume>
<Issue>16</Issue>
<PubDate><Year>2009</Year>
<Month>Aug</Month>
<Day>15</Day>
</PubDate>
</JournalIssue>
<Title>Bioinformatics (Oxford, England)</Title>
<ISOAbbreviation>Bioinformatics</ISOAbbreviation>
</Journal>
<ArticleTitle>Figure mining for biomedical research.</ArticleTitle>
<Pagination><MedlinePgn>2082-4</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/bioinformatics/btp318</ELocationID>
<Abstract><AbstractText Label="MOTIVATION" NlmCategory="BACKGROUND">Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">This study describes a retrieval method that takes advantage of principles in image understanding, text mining and optical character recognition (OCR) to retrieve figure types defined conceptually. A search engine was developed to retrieve tables and figure types to aid computational and experimental research.</AbstractText>
<AbstractText Label="AVAILABILITY" NlmCategory="BACKGROUND">http://iossifovlab.cshl.edu/figurome/.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rodriguez-Esteban</LastName>
<ForeName>Raul</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Systems Biology, Pfizer Inc., Cambridge, MA 02139, USA. raul.rodriguez-esteban@pfizer.com</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Iossifov</LastName>
<ForeName>Ivan</ForeName>
<Initials>I</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2009</Year>
<Month>05</Month>
<Day>13</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Bioinformatics</MedlineTA>
<NlmUniqueID>9808944</NlmUniqueID>
<ISSNLinking>1367-4803</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName MajorTopicYN="N" UI="D000043">Abstracting and Indexing as Topic</DescriptorName>
<QualifierName MajorTopicYN="N" UI="Q000379">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="Y" UI="D035843">Biomedical Research</DescriptorName>
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<MeshHeading><DescriptorName MajorTopicYN="N" UI="D019295">Computational Biology</DescriptorName>
<QualifierName MajorTopicYN="Y" UI="Q000379">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D057225">Data Mining</DescriptorName>
<QualifierName MajorTopicYN="Y" UI="Q000379">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D010363">Pattern Recognition, Automated</DescriptorName>
<QualifierName MajorTopicYN="N" UI="Q000379">methods</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="aheadofprint"><Year>2009</Year>
<Month>5</Month>
<Day>13</Day>
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<PubMedPubDate PubStatus="entrez"><Year>2009</Year>
<Month>5</Month>
<Day>15</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2009</Year>
<Month>5</Month>
<Day>15</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2010</Year>
<Month>1</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pii">btp318</ArticleId>
<ArticleId IdType="doi">10.1093/bioinformatics/btp318</ArticleId>
<ArticleId IdType="pubmed">19439564</ArticleId>
</ArticleIdList>
</PubmedData>
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</record>

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Figure mining for biomedical research.

Figure mining for biomedical research.

Source :

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki