HapticV1, PascalFrancis, Corpus, bibRecord, 000600

Multisensory VR interaction for protein-docking in the CoRSAIRe project

Identifieur interne : 000600 ( PascalFrancis/Corpus ); précédent : 000599; suivant : 000601

Multisensory VR interaction for protein-docking in the CoRSAIRe project

Auteurs : N. Ferey ; J. Nelson ; C. Martin ; L. Picinali ; G. Bouyer ; A. Tek ; P. Bourdot ; J. M. Burkhardt ; B. F. G. Katz ; M. Ammi ; C. Etchebest ; L. Autin

Source :

Virtual reality : (Waltham Cross) [ 1359-4338 ] ; 2009.

RBID : Pascal:10-0361717

Descripteurs français

Pascal (Inist)
- Biologie moléculaire, Réalité virtuelle, Interface multimodale, Interface utilisateur, Ergonomie, Asservissement visuel, Interaction moléculaire, Protéine, Structure protéine, Fixation ligand, Enzyme, Orientation, Macromolécule, Industrie pharmaceutique, Arrimage, Base donnée chimique, Pharmacologie, Chemoinformatique, Base donnée très grande.

English descriptors

KwdEn :
- Chemical databasis, Cheminformatics, Docking, Enzyme, Ergonomics, Ligand binding, Macromolecule, Molecular biology, Molecular interaction, Multimodal interface, Orientation, Pharmaceutical industry, Pharmacology, Protein, Protein structure, User interface, Very large databases, Virtual reality, Visual servoing.

Abstract

Proteins take on their function in the cell by interacting with other proteins or biomolecular complexes. To study this process, computational methods, collectively named protein docking, are used to predict the position and orientation of a protein ligand when it is bound to a protein receptor or enzyme, taking into account chemical or physical criteria. This process is intensively studied to discover new biological functions for proteins and to better understand how these macromolecules take on these functions at the molecular scale. Pharmaceutical research also employs docking techniques for a variety of purposes, most notably in the virtual screening of large databases of available chemicals to select likely molecular candidates for drug design. The basic hypothesis of our work is that Virtual Reality (VR) and multimodal interaction can increase efficiency in reaching and analysing docking solutions, in addition to fully a computational docking approach. To this end, we conducted an ergonomic analysis of the protein-protein current docking task as it is carried out today. Using these results, we designed an immersive and multimodal application where VR devices, such as the three-dimensional mouse and haptic devices, are used to interactively manipulate two proteins to explore possible docking solutions. During this exploration, visual, audio, and haptic feedbacks are combined to render and evaluate chemical or physical properties of the current docking configuration.

Notice en format standard (ISO 2709)

Pour connaître la documentation sur le format Inist Standard.

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Format Inist (serveur)

NO :	PASCAL 10-0361717 INIST
ET :	Multisensory VR interaction for protein-docking in the CoRSAIRe project
AU :	FEREY (N.); NELSON (J.); MARTIN (C.); PICINALI (L.); BOUYER (G.); TEK (A.); BOURDOT (P.); BURKHARDT (J. M.); KATZ (B. F. G.); AMMI (M.); ETCHEBEST (C.); AUTIN (L.); GERVASI (Osvaldo); RANON (Roberto)
AF :	Laboratoire d'Informatique et de Mécanique pour les Sciences de l'Ingénieur, Université Paris XI, BP133/91403 Orsay/France (1 aut., 3 aut., 5 aut., 6 aut., 7 aut., 9 aut., 10 aut.); Arts et Metiers ParisTech, LCPI, 151 Blv. de l'Hôpital/75013 Paris/France (2 aut.); Institut de Recherche et Coordination Acoustique/Musique, 1, place Igor Stravinsky/75004 Paris/France (4 aut.); Laboratoire Ergonomie-Comportement-Interactions, Université Paris V, 45, rue des Saints-Pères/75006 Paris/France (8 aut.); Institut National de la Santé et de la Recherche Médicale, Equipe DSIMB, Université Paris VII, INTS, 6, rue Alexandre Cabanel/75739 Paris/France (11 aut., 12 aut.); Department of Mathematics and Computer Science, University of Perugia, Via Vanvitelli, 1/06123 Perugia/Italie (1 aut.); Human-Computer Interaction Lab, Department of Mathematics and Computer Science, University of Udine, Via delle Scienze 206/33100 Udine/Italie (2 aut.)
DT :	Publication en série; Niveau analytique
SO :	Virtual reality : (Waltham Cross); ISSN 1359-4338; Royaume-Uni; Da. 2009; Vol. 13; No. 4; Pp. 273-293; Bibl. 2 p.1/4
LA :	Anglais
EA :	Proteins take on their function in the cell by interacting with other proteins or biomolecular complexes. To study this process, computational methods, collectively named protein docking, are used to predict the position and orientation of a protein ligand when it is bound to a protein receptor or enzyme, taking into account chemical or physical criteria. This process is intensively studied to discover new biological functions for proteins and to better understand how these macromolecules take on these functions at the molecular scale. Pharmaceutical research also employs docking techniques for a variety of purposes, most notably in the virtual screening of large databases of available chemicals to select likely molecular candidates for drug design. The basic hypothesis of our work is that Virtual Reality (VR) and multimodal interaction can increase efficiency in reaching and analysing docking solutions, in addition to fully a computational docking approach. To this end, we conducted an ergonomic analysis of the protein-protein current docking task as it is carried out today. Using these results, we designed an immersive and multimodal application where VR devices, such as the three-dimensional mouse and haptic devices, are used to interactively manipulate two proteins to explore possible docking solutions. During this exploration, visual, audio, and haptic feedbacks are combined to render and evaluate chemical or physical properties of the current docking configuration.
CC :	002A03H01; 001D02B04
FD :	Biologie moléculaire; Réalité virtuelle; Interface multimodale; Interface utilisateur; Ergonomie; Asservissement visuel; Interaction moléculaire; Protéine; Structure protéine; Fixation ligand; Enzyme; Orientation; Macromolécule; Industrie pharmaceutique; Arrimage; Base donnée chimique; Pharmacologie; Chemoinformatique; Base donnée très grande
ED :	Molecular biology; Virtual reality; Multimodal interface; User interface; Ergonomics; Visual servoing; Molecular interaction; Protein; Protein structure; Ligand binding; Enzyme; Orientation; Macromolecule; Pharmaceutical industry; Docking; Chemical databasis; Pharmacology; Cheminformatics; Very large databases
SD :	Biología molecular; Realidad virtual; Interfaz multimodal; Interfase usuario; Ergonomía; Servomando visual; Interacción molecular; Proteína; Fijación ligando; Enzima; Orientación; Macromolécula; Industria farmacéutica; Estiba; Base dato quimíca; Farmacología; Chemoinformática; Base de datos a gran escala
LO :	INIST-27095.354000171478860050
ID :	10-0361717

Links to Exploration step

Pascal:10-0361717

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Multisensory VR interaction for protein-docking in the CoRSAIRe project</title>
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<series><title level="j" type="main">Virtual reality : (Waltham Cross)</title>
<title level="j" type="abbreviated">Virtual reality : (Walth. Cross)</title>
<idno type="ISSN">1359-4338</idno>
<imprint><date when="2009">2009</date>
</imprint>
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<seriesStmt><title level="j" type="main">Virtual reality : (Waltham Cross)</title>
<title level="j" type="abbreviated">Virtual reality : (Walth. Cross)</title>
<idno type="ISSN">1359-4338</idno>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chemical databasis</term>
<term>Cheminformatics</term>
<term>Docking</term>
<term>Enzyme</term>
<term>Ergonomics</term>
<term>Ligand binding</term>
<term>Macromolecule</term>
<term>Molecular biology</term>
<term>Molecular interaction</term>
<term>Multimodal interface</term>
<term>Orientation</term>
<term>Pharmaceutical industry</term>
<term>Pharmacology</term>
<term>Protein</term>
<term>Protein structure</term>
<term>User interface</term>
<term>Very large databases</term>
<term>Virtual reality</term>
<term>Visual servoing</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Biologie moléculaire</term>
<term>Réalité virtuelle</term>
<term>Interface multimodale</term>
<term>Interface utilisateur</term>
<term>Ergonomie</term>
<term>Asservissement visuel</term>
<term>Interaction moléculaire</term>
<term>Protéine</term>
<term>Structure protéine</term>
<term>Fixation ligand</term>
<term>Enzyme</term>
<term>Orientation</term>
<term>Macromolécule</term>
<term>Industrie pharmaceutique</term>
<term>Arrimage</term>
<term>Base donnée chimique</term>
<term>Pharmacologie</term>
<term>Chemoinformatique</term>
<term>Base donnée très grande</term>
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<front><div type="abstract" xml:lang="en">Proteins take on their function in the cell by interacting with other proteins or biomolecular complexes. To study this process, computational methods, collectively named protein docking, are used to predict the position and orientation of a protein ligand when it is bound to a protein receptor or enzyme, taking into account chemical or physical criteria. This process is intensively studied to discover new biological functions for proteins and to better understand how these macromolecules take on these functions at the molecular scale. Pharmaceutical research also employs docking techniques for a variety of purposes, most notably in the virtual screening of large databases of available chemicals to select likely molecular candidates for drug design. The basic hypothesis of our work is that Virtual Reality (VR) and multimodal interaction can increase efficiency in reaching and analysing docking solutions, in addition to fully a computational docking approach. To this end, we conducted an ergonomic analysis of the protein-protein current docking task as it is carried out today. Using these results, we designed an immersive and multimodal application where VR devices, such as the three-dimensional mouse and haptic devices, are used to interactively manipulate two proteins to explore possible docking solutions. During this exploration, visual, audio, and haptic feedbacks are combined to render and evaluate chemical or physical properties of the current docking configuration.</div>
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<sZ>4 aut.</sZ>
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<s3>FRA</s3>
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<fA15 i1="01"><s1>Department of Mathematics and Computer Science, University of Perugia, Via Vanvitelli, 1</s1>
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<s3>ITA</s3>
<sZ>1 aut.</sZ>
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<ET>Multisensory VR interaction for protein-docking in the CoRSAIRe project</ET>
<AU>FEREY (N.); NELSON (J.); MARTIN (C.); PICINALI (L.); BOUYER (G.); TEK (A.); BOURDOT (P.); BURKHARDT (J. M.); KATZ (B. F. G.); AMMI (M.); ETCHEBEST (C.); AUTIN (L.); GERVASI (Osvaldo); RANON (Roberto)</AU>
<AF>Laboratoire d'Informatique et de Mécanique pour les Sciences de l'Ingénieur, Université Paris XI, BP133/91403 Orsay/France (1 aut., 3 aut., 5 aut., 6 aut., 7 aut., 9 aut., 10 aut.); Arts et Metiers ParisTech, LCPI, 151 Blv. de l'Hôpital/75013 Paris/France (2 aut.); Institut de Recherche et Coordination Acoustique/Musique, 1, place Igor Stravinsky/75004 Paris/France (4 aut.); Laboratoire Ergonomie-Comportement-Interactions, Université Paris V, 45, rue des Saints-Pères/75006 Paris/France (8 aut.); Institut National de la Santé et de la Recherche Médicale, Equipe DSIMB, Université Paris VII, INTS, 6, rue Alexandre Cabanel/75739 Paris/France (11 aut., 12 aut.); Department of Mathematics and Computer Science, University of Perugia, Via Vanvitelli, 1/06123 Perugia/Italie (1 aut.); Human-Computer Interaction Lab, Department of Mathematics and Computer Science, University of Udine, Via delle Scienze 206/33100 Udine/Italie (2 aut.)</AF>
<DT>Publication en série; Niveau analytique</DT>
<SO>Virtual reality : (Waltham Cross); ISSN 1359-4338; Royaume-Uni; Da. 2009; Vol. 13; No. 4; Pp. 273-293; Bibl. 2 p.1/4</SO>
<LA>Anglais</LA>
<EA>Proteins take on their function in the cell by interacting with other proteins or biomolecular complexes. To study this process, computational methods, collectively named protein docking, are used to predict the position and orientation of a protein ligand when it is bound to a protein receptor or enzyme, taking into account chemical or physical criteria. This process is intensively studied to discover new biological functions for proteins and to better understand how these macromolecules take on these functions at the molecular scale. Pharmaceutical research also employs docking techniques for a variety of purposes, most notably in the virtual screening of large databases of available chemicals to select likely molecular candidates for drug design. The basic hypothesis of our work is that Virtual Reality (VR) and multimodal interaction can increase efficiency in reaching and analysing docking solutions, in addition to fully a computational docking approach. To this end, we conducted an ergonomic analysis of the protein-protein current docking task as it is carried out today. Using these results, we designed an immersive and multimodal application where VR devices, such as the three-dimensional mouse and haptic devices, are used to interactively manipulate two proteins to explore possible docking solutions. During this exploration, visual, audio, and haptic feedbacks are combined to render and evaluate chemical or physical properties of the current docking configuration.</EA>
<CC>002A03H01; 001D02B04</CC>
<FD>Biologie moléculaire; Réalité virtuelle; Interface multimodale; Interface utilisateur; Ergonomie; Asservissement visuel; Interaction moléculaire; Protéine; Structure protéine; Fixation ligand; Enzyme; Orientation; Macromolécule; Industrie pharmaceutique; Arrimage; Base donnée chimique; Pharmacologie; Chemoinformatique; Base donnée très grande</FD>
<ED>Molecular biology; Virtual reality; Multimodal interface; User interface; Ergonomics; Visual servoing; Molecular interaction; Protein; Protein structure; Ligand binding; Enzyme; Orientation; Macromolecule; Pharmaceutical industry; Docking; Chemical databasis; Pharmacology; Cheminformatics; Very large databases</ED>
<SD>Biología molecular; Realidad virtual; Interfaz multimodal; Interfase usuario; Ergonomía; Servomando visual; Interacción molecular; Proteína; Fijación ligando; Enzima; Orientación; Macromolécula; Industria farmacéutica; Estiba; Base dato quimíca; Farmacología; Chemoinformática; Base de datos a gran escala</SD>
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<ID>10-0361717</ID>
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Multisensory VR interaction for protein-docking in the CoRSAIRe project

Multisensory VR interaction for protein-docking in the CoRSAIRe project

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