Serveur d'exploration sur les dispositifs haptiques

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Interactive fitting augmented by force-feedback and virtual reality.

Identifieur interne : 000465 ( Ncbi/Merge ); précédent : 000464; suivant : 000466

Interactive fitting augmented by force-feedback and virtual reality.

Auteurs : Stefan Birmanns [États-Unis] ; Willy Wriggers

Source :

RBID : pubmed:14643215

English descriptors

Abstract

The synthesis of low-resolution electron microscopy data with high-resolution molecular structures has become a common routine in the modeling of biomolecular assemblies. In contrast to algorithmic "black box" solutions, the interactive "fitting by eye" takes advantage of an expert's structural or biochemical knowledge and can be used with very noisy experimental data. In the solution proposed in this paper, we support the expert user in an interactive fitting session by haptic rendering and virtual reality. The quantitative and tactile feedback facilitates and objectifies the otherwise unrestrained modeling. We introduce a highly accurate reduced representation of the gradient of the cross-correlation coefficient that sustains force updates for haptic rendering at sufficiently high refresh rates.

PubMed: 14643215

Links toward previous steps (curation, corpus...)


Links to Exploration step

pubmed:14643215

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Interactive fitting augmented by force-feedback and virtual reality.</title>
<author>
<name sortKey="Birmanns, Stefan" sort="Birmanns, Stefan" uniqKey="Birmanns S" first="Stefan" last="Birmanns">Stefan Birmanns</name>
<affiliation wicri:level="2">
<nlm:affiliation>School of Health Information Sciences, University of Texas Health Science Center at Houston, 7000 Fannin Street Suite 600, Houston, TX 77030, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>School of Health Information Sciences, University of Texas Health Science Center at Houston, 7000 Fannin Street Suite 600, Houston, TX 77030</wicri:regionArea>
<placeName>
<region type="state">Texas</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wriggers, Willy" sort="Wriggers, Willy" uniqKey="Wriggers W" first="Willy" last="Wriggers">Willy Wriggers</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="????">
<PubDate>
<MedlineDate>2003 Oct-Nov</MedlineDate>
</PubDate>
</date>
<idno type="RBID">pubmed:14643215</idno>
<idno type="pmid">14643215</idno>
<idno type="wicri:Area/PubMed/Corpus">001B76</idno>
<idno type="wicri:Area/PubMed/Curation">001B76</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002331</idno>
<idno type="wicri:Area/Ncbi/Merge">000465</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Interactive fitting augmented by force-feedback and virtual reality.</title>
<author>
<name sortKey="Birmanns, Stefan" sort="Birmanns, Stefan" uniqKey="Birmanns S" first="Stefan" last="Birmanns">Stefan Birmanns</name>
<affiliation wicri:level="2">
<nlm:affiliation>School of Health Information Sciences, University of Texas Health Science Center at Houston, 7000 Fannin Street Suite 600, Houston, TX 77030, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>School of Health Information Sciences, University of Texas Health Science Center at Houston, 7000 Fannin Street Suite 600, Houston, TX 77030</wicri:regionArea>
<placeName>
<region type="state">Texas</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wriggers, Willy" sort="Wriggers, Willy" uniqKey="Wriggers W" first="Willy" last="Wriggers">Willy Wriggers</name>
</author>
</analytic>
<series>
<title level="j">Journal of structural biology</title>
<idno type="ISSN">1047-8477</idno>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Algorithms</term>
<term>Biophysical Phenomena</term>
<term>Biophysics</term>
<term>Image Processing, Computer-Assisted (methods)</term>
<term>Models, Statistical</term>
<term>Normal Distribution</term>
<term>Software</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Image Processing, Computer-Assisted</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Algorithms</term>
<term>Biophysical Phenomena</term>
<term>Biophysics</term>
<term>Models, Statistical</term>
<term>Normal Distribution</term>
<term>Software</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The synthesis of low-resolution electron microscopy data with high-resolution molecular structures has become a common routine in the modeling of biomolecular assemblies. In contrast to algorithmic "black box" solutions, the interactive "fitting by eye" takes advantage of an expert's structural or biochemical knowledge and can be used with very noisy experimental data. In the solution proposed in this paper, we support the expert user in an interactive fitting session by haptic rendering and virtual reality. The quantitative and tactile feedback facilitates and objectifies the otherwise unrestrained modeling. We introduce a highly accurate reduced representation of the gradient of the cross-correlation coefficient that sustains force updates for haptic rendering at sufficiently high refresh rates.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Owner="NLM" Status="MEDLINE">
<PMID Version="1">14643215</PMID>
<DateCreated>
<Year>2003</Year>
<Month>12</Month>
<Day>03</Day>
</DateCreated>
<DateCompleted>
<Year>2004</Year>
<Month>07</Month>
<Day>19</Day>
</DateCompleted>
<DateRevised>
<Year>2008</Year>
<Month>11</Month>
<Day>21</Day>
</DateRevised>
<Article PubModel="Print">
<Journal>
<ISSN IssnType="Print">1047-8477</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>144</Volume>
<Issue>1-2</Issue>
<PubDate>
<MedlineDate>2003 Oct-Nov</MedlineDate>
</PubDate>
</JournalIssue>
<Title>Journal of structural biology</Title>
<ISOAbbreviation>J. Struct. Biol.</ISOAbbreviation>
</Journal>
<ArticleTitle>Interactive fitting augmented by force-feedback and virtual reality.</ArticleTitle>
<Pagination>
<MedlinePgn>123-31</MedlinePgn>
</Pagination>
<Abstract>
<AbstractText>The synthesis of low-resolution electron microscopy data with high-resolution molecular structures has become a common routine in the modeling of biomolecular assemblies. In contrast to algorithmic "black box" solutions, the interactive "fitting by eye" takes advantage of an expert's structural or biochemical knowledge and can be used with very noisy experimental data. In the solution proposed in this paper, we support the expert user in an interactive fitting session by haptic rendering and virtual reality. The quantitative and tactile feedback facilitates and objectifies the otherwise unrestrained modeling. We introduce a highly accurate reduced representation of the gradient of the cross-correlation coefficient that sustains force updates for haptic rendering at sufficiently high refresh rates.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Birmanns</LastName>
<ForeName>Stefan</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>School of Health Information Sciences, University of Texas Health Science Center at Houston, 7000 Fannin Street Suite 600, Houston, TX 77030, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wriggers</LastName>
<ForeName>Willy</ForeName>
<Initials>W</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>1R01-GM62968</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
<PublicationType UI="D013487">Research Support, U.S. Gov't, P.H.S.</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>J Struct Biol</MedlineTA>
<NlmUniqueID>9011206</NlmUniqueID>
<ISSNLinking>1047-8477</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D000465">Algorithms</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D055592">Biophysical Phenomena</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D001703">Biophysics</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D007091">Image Processing, Computer-Assisted</DescriptorName>
<QualifierName MajorTopicYN="Y" UI="Q000379">methods</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D015233">Models, Statistical</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="N" UI="D016011">Normal Distribution</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName MajorTopicYN="Y" UI="D012984">Software</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="pubmed">
<Year>2003</Year>
<Month>12</Month>
<Day>4</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2004</Year>
<Month>7</Month>
<Day>20</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2003</Year>
<Month>12</Month>
<Day>4</Day>
<Hour>5</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">14643215</ArticleId>
<ArticleId IdType="pii">S1047847703001850</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>Texas</li>
</region>
</list>
<tree>
<noCountry>
<name sortKey="Wriggers, Willy" sort="Wriggers, Willy" uniqKey="Wriggers W" first="Willy" last="Wriggers">Willy Wriggers</name>
</noCountry>
<country name="États-Unis">
<region name="Texas">
<name sortKey="Birmanns, Stefan" sort="Birmanns, Stefan" uniqKey="Birmanns S" first="Stefan" last="Birmanns">Stefan Birmanns</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/HapticV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000465 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 000465 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    HapticV1
   |flux=    Ncbi
   |étape=   Merge
   |type=    RBID
   |clé=     pubmed:14643215
   |texte=   Interactive fitting augmented by force-feedback and virtual reality.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i   -Sk "pubmed:14643215" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd   \
       | NlmPubMed2Wicri -a HapticV1 

Wicri

This area was generated with Dilib version V0.6.23.
Data generation: Mon Jun 13 01:09:46 2016. Site generation: Wed Mar 6 09:54:07 2024