The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Identifieur interne : 000056 ( PubMed/Curation ); précédent : 000055; suivant : 000057The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Auteurs : Stephen A. Goff [États-Unis] ; Matthew Vaughn ; Sheldon Mckay ; Eric Lyons ; Ann E. Stapleton ; Damian Gessler ; Naim Matasci ; Liya Wang ; Matthew Hanlon ; Andrew Lenards ; Andy Muir ; Nirav Merchant ; Sonya Lowry ; Stephen Mock ; Matthew Helmke ; Adam Kubach ; Martha Narro ; Nicole Hopkins ; David Micklos ; Uwe Hilgert ; Michael Gonzales ; Chris Jordan ; Edwin Skidmore ; Rion Dooley ; John Cazes ; Robert Mclay ; Zhenyuan Lu ; Shiran Pasternak ; Lars Koesterke ; William H. Piel ; Ruth Grene ; Christos Noutsos ; Karla Gendler ; Xin Feng ; Chunlao Tang ; Monica Lent ; Seung-Jin Kim ; Kristian Kvilekval ; B S Manjunath ; Val Tannen ; Alexandros Stamatakis ; Michael Sanderson ; Stephen M. Welch ; Karen A. Cranston ; Pamela Soltis ; Doug Soltis ; Brian O'Meara ; Cecile Ane ; Tom Brutnell ; Daniel J. Kleibenstein ; Jeffery W. White ; James Leebens-Mack ; Michael J. Donoghue ; Edgar P. Spalding ; Todd J. Vision ; Christopher R. Myers ; David Lowenthal ; Brian J. Enquist ; Brad Boyle ; Ali Akoglu ; Greg Andrews ; Sudha Ram ; Doreen Ware ; Lincoln Stein ; Dan StanzioneSource :
- Frontiers in plant science [ 1664-462X ] ; 2011.
Abstract
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.
DOI: 10.3389/fpls.2011.00034
PubMed: 22645531
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Goff</name><affiliation wicri:level="1"><nlm:affiliation>BIO5 Institute, University of Arizona Tucson, AZ, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>BIO5 Institute, University of Arizona Tucson, AZ</wicri:regionArea></affiliation></author><author><name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name></author><author><name sortKey="Mckay, Sheldon" sort="Mckay, Sheldon" uniqKey="Mckay S" first="Sheldon" last="Mckay">Sheldon Mckay</name></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name></author><author><name sortKey="Stapleton, Ann E" sort="Stapleton, Ann E" uniqKey="Stapleton A" first="Ann E" last="Stapleton">Ann E. Stapleton</name></author><author><name sortKey="Gessler, Damian" sort="Gessler, Damian" uniqKey="Gessler D" first="Damian" last="Gessler">Damian Gessler</name></author><author><name sortKey="Matasci, Naim" sort="Matasci, Naim" uniqKey="Matasci N" first="Naim" last="Matasci">Naim Matasci</name></author><author><name sortKey="Wang, Liya" sort="Wang, Liya" uniqKey="Wang L" first="Liya" last="Wang">Liya Wang</name></author><author><name sortKey="Hanlon, Matthew" sort="Hanlon, Matthew" uniqKey="Hanlon M" first="Matthew" last="Hanlon">Matthew Hanlon</name></author><author><name sortKey="Lenards, Andrew" sort="Lenards, Andrew" uniqKey="Lenards A" first="Andrew" last="Lenards">Andrew Lenards</name></author><author><name sortKey="Muir, Andy" sort="Muir, Andy" uniqKey="Muir A" first="Andy" last="Muir">Andy Muir</name></author><author><name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name></author><author><name sortKey="Lowry, Sonya" sort="Lowry, Sonya" uniqKey="Lowry S" first="Sonya" last="Lowry">Sonya Lowry</name></author><author><name sortKey="Mock, Stephen" sort="Mock, Stephen" uniqKey="Mock S" first="Stephen" last="Mock">Stephen Mock</name></author><author><name sortKey="Helmke, Matthew" sort="Helmke, Matthew" uniqKey="Helmke M" first="Matthew" last="Helmke">Matthew Helmke</name></author><author><name sortKey="Kubach, Adam" sort="Kubach, Adam" uniqKey="Kubach A" first="Adam" last="Kubach">Adam Kubach</name></author><author><name sortKey="Narro, Martha" sort="Narro, Martha" uniqKey="Narro M" first="Martha" last="Narro">Martha Narro</name></author><author><name sortKey="Hopkins, Nicole" sort="Hopkins, Nicole" uniqKey="Hopkins N" first="Nicole" last="Hopkins">Nicole Hopkins</name></author><author><name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name></author><author><name sortKey="Hilgert, Uwe" sort="Hilgert, Uwe" uniqKey="Hilgert U" first="Uwe" last="Hilgert">Uwe Hilgert</name></author><author><name sortKey="Gonzales, Michael" sort="Gonzales, Michael" uniqKey="Gonzales M" first="Michael" last="Gonzales">Michael Gonzales</name></author><author><name sortKey="Jordan, Chris" sort="Jordan, Chris" uniqKey="Jordan C" first="Chris" last="Jordan">Chris Jordan</name></author><author><name sortKey="Skidmore, Edwin" sort="Skidmore, Edwin" uniqKey="Skidmore E" first="Edwin" last="Skidmore">Edwin Skidmore</name></author><author><name sortKey="Dooley, Rion" sort="Dooley, Rion" uniqKey="Dooley R" first="Rion" last="Dooley">Rion Dooley</name></author><author><name sortKey="Cazes, John" sort="Cazes, John" uniqKey="Cazes J" first="John" last="Cazes">John Cazes</name></author><author><name sortKey="Mclay, Robert" sort="Mclay, Robert" uniqKey="Mclay R" first="Robert" last="Mclay">Robert Mclay</name></author><author><name sortKey="Lu, Zhenyuan" sort="Lu, Zhenyuan" uniqKey="Lu Z" first="Zhenyuan" last="Lu">Zhenyuan Lu</name></author><author><name sortKey="Pasternak, Shiran" sort="Pasternak, Shiran" uniqKey="Pasternak S" first="Shiran" last="Pasternak">Shiran Pasternak</name></author><author><name sortKey="Koesterke, Lars" sort="Koesterke, Lars" uniqKey="Koesterke L" first="Lars" last="Koesterke">Lars Koesterke</name></author><author><name sortKey="Piel, William H" sort="Piel, William H" uniqKey="Piel W" first="William H" last="Piel">William H. 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Kleibenstein</name></author><author><name sortKey="White, Jeffery W" sort="White, Jeffery W" uniqKey="White J" first="Jeffery W" last="White">Jeffery W. White</name></author><author><name sortKey="Leebens Mack, James" sort="Leebens Mack, James" uniqKey="Leebens Mack J" first="James" last="Leebens-Mack">James Leebens-Mack</name></author><author><name sortKey="Donoghue, Michael J" sort="Donoghue, Michael J" uniqKey="Donoghue M" first="Michael J" last="Donoghue">Michael J. Donoghue</name></author><author><name sortKey="Spalding, Edgar P" sort="Spalding, Edgar P" uniqKey="Spalding E" first="Edgar P" last="Spalding">Edgar P. Spalding</name></author><author><name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J" last="Vision">Todd J. Vision</name></author><author><name sortKey="Myers, Christopher R" sort="Myers, Christopher R" uniqKey="Myers C" first="Christopher R" last="Myers">Christopher R. Myers</name></author><author><name sortKey="Lowenthal, David" sort="Lowenthal, David" uniqKey="Lowenthal D" first="David" last="Lowenthal">David Lowenthal</name></author><author><name sortKey="Enquist, Brian J" sort="Enquist, Brian J" uniqKey="Enquist B" first="Brian J" last="Enquist">Brian J. Enquist</name></author><author><name sortKey="Boyle, Brad" sort="Boyle, Brad" uniqKey="Boyle B" first="Brad" last="Boyle">Brad Boyle</name></author><author><name sortKey="Akoglu, Ali" sort="Akoglu, Ali" uniqKey="Akoglu A" first="Ali" last="Akoglu">Ali Akoglu</name></author><author><name sortKey="Andrews, Greg" sort="Andrews, Greg" uniqKey="Andrews G" first="Greg" last="Andrews">Greg Andrews</name></author><author><name sortKey="Ram, Sudha" sort="Ram, Sudha" uniqKey="Ram S" first="Sudha" last="Ram">Sudha Ram</name></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name></author><author><name sortKey="Stein, Lincoln" sort="Stein, Lincoln" uniqKey="Stein L" first="Lincoln" last="Stein">Lincoln Stein</name></author><author><name sortKey="Stanzione, Dan" sort="Stanzione, Dan" uniqKey="Stanzione D" first="Dan" last="Stanzione">Dan Stanzione</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="doi">10.3389/fpls.2011.00034</idno><idno type="RBID">pubmed:22645531</idno><idno type="pmid">22645531</idno><idno type="wicri:Area/PubMed/Corpus">000056</idno><idno type="wicri:Area/PubMed/Curation">000056</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The iPlant Collaborative: Cyberinfrastructure for Plant Biology.</title><author><name sortKey="Goff, Stephen A" sort="Goff, Stephen A" uniqKey="Goff S" first="Stephen A" last="Goff">Stephen A. Goff</name><affiliation wicri:level="1"><nlm:affiliation>BIO5 Institute, University of Arizona Tucson, AZ, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>BIO5 Institute, University of Arizona Tucson, AZ</wicri:regionArea></affiliation></author><author><name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name></author><author><name sortKey="Mckay, Sheldon" sort="Mckay, Sheldon" uniqKey="Mckay S" first="Sheldon" last="Mckay">Sheldon Mckay</name></author><author><name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name></author><author><name sortKey="Stapleton, Ann E" sort="Stapleton, Ann E" uniqKey="Stapleton A" first="Ann E" last="Stapleton">Ann E. Stapleton</name></author><author><name sortKey="Gessler, Damian" sort="Gessler, Damian" uniqKey="Gessler D" first="Damian" last="Gessler">Damian Gessler</name></author><author><name sortKey="Matasci, Naim" sort="Matasci, Naim" uniqKey="Matasci N" first="Naim" last="Matasci">Naim Matasci</name></author><author><name sortKey="Wang, Liya" sort="Wang, Liya" uniqKey="Wang L" first="Liya" last="Wang">Liya Wang</name></author><author><name sortKey="Hanlon, Matthew" sort="Hanlon, Matthew" uniqKey="Hanlon M" first="Matthew" last="Hanlon">Matthew Hanlon</name></author><author><name sortKey="Lenards, Andrew" sort="Lenards, Andrew" uniqKey="Lenards A" first="Andrew" last="Lenards">Andrew Lenards</name></author><author><name sortKey="Muir, Andy" sort="Muir, Andy" uniqKey="Muir A" first="Andy" last="Muir">Andy Muir</name></author><author><name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name></author><author><name sortKey="Lowry, Sonya" sort="Lowry, Sonya" uniqKey="Lowry S" first="Sonya" last="Lowry">Sonya Lowry</name></author><author><name sortKey="Mock, Stephen" sort="Mock, Stephen" uniqKey="Mock S" first="Stephen" last="Mock">Stephen Mock</name></author><author><name sortKey="Helmke, Matthew" sort="Helmke, Matthew" uniqKey="Helmke M" first="Matthew" last="Helmke">Matthew Helmke</name></author><author><name sortKey="Kubach, Adam" sort="Kubach, Adam" uniqKey="Kubach A" first="Adam" last="Kubach">Adam Kubach</name></author><author><name sortKey="Narro, Martha" sort="Narro, Martha" uniqKey="Narro M" first="Martha" last="Narro">Martha Narro</name></author><author><name sortKey="Hopkins, Nicole" sort="Hopkins, Nicole" uniqKey="Hopkins N" first="Nicole" last="Hopkins">Nicole Hopkins</name></author><author><name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name></author><author><name sortKey="Hilgert, Uwe" sort="Hilgert, Uwe" uniqKey="Hilgert U" first="Uwe" last="Hilgert">Uwe Hilgert</name></author><author><name sortKey="Gonzales, Michael" sort="Gonzales, Michael" uniqKey="Gonzales M" first="Michael" last="Gonzales">Michael Gonzales</name></author><author><name sortKey="Jordan, Chris" sort="Jordan, Chris" uniqKey="Jordan C" first="Chris" last="Jordan">Chris Jordan</name></author><author><name sortKey="Skidmore, Edwin" sort="Skidmore, Edwin" uniqKey="Skidmore E" first="Edwin" last="Skidmore">Edwin Skidmore</name></author><author><name sortKey="Dooley, Rion" sort="Dooley, Rion" uniqKey="Dooley R" first="Rion" last="Dooley">Rion Dooley</name></author><author><name sortKey="Cazes, John" sort="Cazes, John" uniqKey="Cazes J" first="John" last="Cazes">John Cazes</name></author><author><name sortKey="Mclay, Robert" sort="Mclay, Robert" uniqKey="Mclay R" first="Robert" last="Mclay">Robert Mclay</name></author><author><name sortKey="Lu, Zhenyuan" sort="Lu, Zhenyuan" uniqKey="Lu Z" first="Zhenyuan" last="Lu">Zhenyuan Lu</name></author><author><name sortKey="Pasternak, Shiran" sort="Pasternak, Shiran" uniqKey="Pasternak S" first="Shiran" last="Pasternak">Shiran Pasternak</name></author><author><name sortKey="Koesterke, Lars" sort="Koesterke, Lars" uniqKey="Koesterke L" first="Lars" last="Koesterke">Lars Koesterke</name></author><author><name sortKey="Piel, William H" sort="Piel, William H" uniqKey="Piel W" first="William H" last="Piel">William H. Piel</name></author><author><name sortKey="Grene, Ruth" sort="Grene, Ruth" uniqKey="Grene R" first="Ruth" last="Grene">Ruth Grene</name></author><author><name sortKey="Noutsos, Christos" sort="Noutsos, Christos" uniqKey="Noutsos C" first="Christos" last="Noutsos">Christos Noutsos</name></author><author><name sortKey="Gendler, Karla" sort="Gendler, Karla" uniqKey="Gendler K" first="Karla" last="Gendler">Karla Gendler</name></author><author><name sortKey="Feng, Xin" sort="Feng, Xin" uniqKey="Feng X" first="Xin" last="Feng">Xin Feng</name></author><author><name sortKey="Tang, Chunlao" sort="Tang, Chunlao" uniqKey="Tang C" first="Chunlao" last="Tang">Chunlao Tang</name></author><author><name sortKey="Lent, Monica" sort="Lent, Monica" uniqKey="Lent M" first="Monica" last="Lent">Monica Lent</name></author><author><name sortKey="Kim, Seung Jin" sort="Kim, Seung Jin" uniqKey="Kim S" first="Seung-Jin" last="Kim">Seung-Jin Kim</name></author><author><name sortKey="Kvilekval, Kristian" sort="Kvilekval, Kristian" uniqKey="Kvilekval K" first="Kristian" last="Kvilekval">Kristian Kvilekval</name></author><author><name sortKey="Manjunath, B S" sort="Manjunath, B S" uniqKey="Manjunath B" first="B S" last="Manjunath">B S Manjunath</name></author><author><name sortKey="Tannen, Val" sort="Tannen, Val" uniqKey="Tannen V" first="Val" last="Tannen">Val Tannen</name></author><author><name sortKey="Stamatakis, Alexandros" sort="Stamatakis, Alexandros" uniqKey="Stamatakis A" first="Alexandros" last="Stamatakis">Alexandros Stamatakis</name></author><author><name sortKey="Sanderson, Michael" sort="Sanderson, Michael" uniqKey="Sanderson M" first="Michael" last="Sanderson">Michael Sanderson</name></author><author><name sortKey="Welch, Stephen M" sort="Welch, Stephen M" uniqKey="Welch S" first="Stephen M" last="Welch">Stephen M. Welch</name></author><author><name sortKey="Cranston, Karen A" sort="Cranston, Karen A" uniqKey="Cranston K" first="Karen A" last="Cranston">Karen A. Cranston</name></author><author><name sortKey="Soltis, Pamela" sort="Soltis, Pamela" uniqKey="Soltis P" first="Pamela" last="Soltis">Pamela Soltis</name></author><author><name sortKey="Soltis, Doug" sort="Soltis, Doug" uniqKey="Soltis D" first="Doug" last="Soltis">Doug Soltis</name></author><author><name sortKey="O Meara, Brian" sort="O Meara, Brian" uniqKey="O Meara B" first="Brian" last="O'Meara">Brian O'Meara</name></author><author><name sortKey="Ane, Cecile" sort="Ane, Cecile" uniqKey="Ane C" first="Cecile" last="Ane">Cecile Ane</name></author><author><name sortKey="Brutnell, Tom" sort="Brutnell, Tom" uniqKey="Brutnell T" first="Tom" last="Brutnell">Tom Brutnell</name></author><author><name sortKey="Kleibenstein, Daniel J" sort="Kleibenstein, Daniel J" uniqKey="Kleibenstein D" first="Daniel J" last="Kleibenstein">Daniel J. Kleibenstein</name></author><author><name sortKey="White, Jeffery W" sort="White, Jeffery W" uniqKey="White J" first="Jeffery W" last="White">Jeffery W. White</name></author><author><name sortKey="Leebens Mack, James" sort="Leebens Mack, James" uniqKey="Leebens Mack J" first="James" last="Leebens-Mack">James Leebens-Mack</name></author><author><name sortKey="Donoghue, Michael J" sort="Donoghue, Michael J" uniqKey="Donoghue M" first="Michael J" last="Donoghue">Michael J. Donoghue</name></author><author><name sortKey="Spalding, Edgar P" sort="Spalding, Edgar P" uniqKey="Spalding E" first="Edgar P" last="Spalding">Edgar P. Spalding</name></author><author><name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J" last="Vision">Todd J. Vision</name></author><author><name sortKey="Myers, Christopher R" sort="Myers, Christopher R" uniqKey="Myers C" first="Christopher R" last="Myers">Christopher R. Myers</name></author><author><name sortKey="Lowenthal, David" sort="Lowenthal, David" uniqKey="Lowenthal D" first="David" last="Lowenthal">David Lowenthal</name></author><author><name sortKey="Enquist, Brian J" sort="Enquist, Brian J" uniqKey="Enquist B" first="Brian J" last="Enquist">Brian J. Enquist</name></author><author><name sortKey="Boyle, Brad" sort="Boyle, Brad" uniqKey="Boyle B" first="Brad" last="Boyle">Brad Boyle</name></author><author><name sortKey="Akoglu, Ali" sort="Akoglu, Ali" uniqKey="Akoglu A" first="Ali" last="Akoglu">Ali Akoglu</name></author><author><name sortKey="Andrews, Greg" sort="Andrews, Greg" uniqKey="Andrews G" first="Greg" last="Andrews">Greg Andrews</name></author><author><name sortKey="Ram, Sudha" sort="Ram, Sudha" uniqKey="Ram S" first="Sudha" last="Ram">Sudha Ram</name></author><author><name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name></author><author><name sortKey="Stein, Lincoln" sort="Stein, Lincoln" uniqKey="Stein L" first="Lincoln" last="Stein">Lincoln Stein</name></author><author><name sortKey="Stanzione, Dan" sort="Stanzione, Dan" uniqKey="Stanzione D" first="Dan" last="Stanzione">Dan Stanzione</name></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.</div></front></TEI><pubmed><MedlineCitation Owner="NLM" Status="PubMed-not-MEDLINE"><PMID Version="1">22645531</PMID><DateCreated><Year>2012</Year><Month>05</Month><Day>30</Day></DateCreated><DateCompleted><Year>2012</Year><Month>08</Month><Day>23</Day></DateCompleted><DateRevised><Year>2013</Year><Month>08</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1664-462X</ISSN><JournalIssue CitedMedium="Internet"><Volume>2</Volume><PubDate><Year>2011</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>The iPlant Collaborative: Cyberinfrastructure for Plant Biology.</ArticleTitle><Pagination><MedlinePgn>34</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2011.00034</ELocationID><Abstract><AbstractText>The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Goff</LastName><ForeName>Stephen A</ForeName><Initials>SA</Initials><AffiliationInfo><Affiliation>BIO5 Institute, University of Arizona Tucson, AZ, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vaughn</LastName><ForeName>Matthew</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>McKay</LastName><ForeName>Sheldon</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Lyons</LastName><ForeName>Eric</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Stapleton</LastName><ForeName>Ann E</ForeName><Initials>AE</Initials></Author><Author ValidYN="Y"><LastName>Gessler</LastName><ForeName>Damian</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Matasci</LastName><ForeName>Naim</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Liya</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Hanlon</LastName><ForeName>Matthew</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Lenards</LastName><ForeName>Andrew</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Muir</LastName><ForeName>Andy</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Merchant</LastName><ForeName>Nirav</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Lowry</LastName><ForeName>Sonya</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Mock</LastName><ForeName>Stephen</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Helmke</LastName><ForeName>Matthew</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Kubach</LastName><ForeName>Adam</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Narro</LastName><ForeName>Martha</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Hopkins</LastName><ForeName>Nicole</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Micklos</LastName><ForeName>David</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Hilgert</LastName><ForeName>Uwe</ForeName><Initials>U</Initials></Author><Author ValidYN="Y"><LastName>Gonzales</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Jordan</LastName><ForeName>Chris</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Skidmore</LastName><ForeName>Edwin</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Dooley</LastName><ForeName>Rion</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Cazes</LastName><ForeName>John</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>McLay</LastName><ForeName>Robert</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Zhenyuan</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Pasternak</LastName><ForeName>Shiran</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Koesterke</LastName><ForeName>Lars</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Piel</LastName><ForeName>William H</ForeName><Initials>WH</Initials></Author><Author ValidYN="Y"><LastName>Grene</LastName><ForeName>Ruth</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Noutsos</LastName><ForeName>Christos</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Gendler</LastName><ForeName>Karla</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Xin</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Chunlao</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Lent</LastName><ForeName>Monica</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Seung-Jin</ForeName><Initials>SJ</Initials></Author><Author ValidYN="Y"><LastName>Kvilekval</LastName><ForeName>Kristian</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Manjunath</LastName><ForeName>B S</ForeName><Initials>BS</Initials></Author><Author ValidYN="Y"><LastName>Tannen</LastName><ForeName>Val</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Stamatakis</LastName><ForeName>Alexandros</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Sanderson</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Welch</LastName><ForeName>Stephen M</ForeName><Initials>SM</Initials></Author><Author ValidYN="Y"><LastName>Cranston</LastName><ForeName>Karen A</ForeName><Initials>KA</Initials></Author><Author ValidYN="Y"><LastName>Soltis</LastName><ForeName>Pamela</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Soltis</LastName><ForeName>Doug</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>O'Meara</LastName><ForeName>Brian</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Ane</LastName><ForeName>Cecile</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Brutnell</LastName><ForeName>Tom</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Kleibenstein</LastName><ForeName>Daniel J</ForeName><Initials>DJ</Initials></Author><Author ValidYN="Y"><LastName>White</LastName><ForeName>Jeffery W</ForeName><Initials>JW</Initials></Author><Author ValidYN="Y"><LastName>Leebens-Mack</LastName><ForeName>James</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Donoghue</LastName><ForeName>Michael J</ForeName><Initials>MJ</Initials></Author><Author ValidYN="Y"><LastName>Spalding</LastName><ForeName>Edgar P</ForeName><Initials>EP</Initials></Author><Author ValidYN="Y"><LastName>Vision</LastName><ForeName>Todd J</ForeName><Initials>TJ</Initials></Author><Author ValidYN="Y"><LastName>Myers</LastName><ForeName>Christopher R</ForeName><Initials>CR</Initials></Author><Author ValidYN="Y"><LastName>Lowenthal</LastName><ForeName>David</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Enquist</LastName><ForeName>Brian J</ForeName><Initials>BJ</Initials></Author><Author ValidYN="Y"><LastName>Boyle</LastName><ForeName>Brad</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Akoglu</LastName><ForeName>Ali</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Andrews</LastName><ForeName>Greg</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Ram</LastName><ForeName>Sudha</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Ware</LastName><ForeName>Doreen</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Stein</LastName><ForeName>Lincoln</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Stanzione</LastName><ForeName>Dan</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>07</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><OtherID Source="NLM">PMC3355756</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">bioinformatics</Keyword><Keyword MajorTopicYN="N">computational biology</Keyword><Keyword MajorTopicYN="N">cyberinfrastructure</Keyword><Keyword MajorTopicYN="N">plant biology</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2011</Year><Month>5</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>7</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="epublish"><Year>2011</Year><Month>7</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>5</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="doi">10.3389/fpls.2011.00034</ArticleId><ArticleId IdType="pubmed">22645531</ArticleId><ArticleId IdType="pmc">PMC3355756</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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