A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies
Identifieur interne : 000442 ( Pmc/Curation ); précédent : 000441; suivant : 000443A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies
Auteurs : Line C. Pouchard ; Marcia L. Branstetter ; Robert B. Cook ; Ranjeet Devarakonda ; Jim Green ; Giri Palanisamy ; Paul Alexander ; Natalya F. NoySource :
- Earth science informatics [ 1865-0473 ] ; 2013.
Abstract
Url:
DOI: 10.1007/s12145-013-0118-2
PubMed: 24416086
PubMed Central: 3883668
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies</title>
<author><name sortKey="Pouchard, Line C" sort="Pouchard, Line C" uniqKey="Pouchard L" first="Line C." last="Pouchard">Line C. Pouchard</name>
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<author><name sortKey="Branstetter, Marcia L" sort="Branstetter, Marcia L" uniqKey="Branstetter M" first="Marcia L." last="Branstetter">Marcia L. Branstetter</name>
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<author><name sortKey="Cook, Robert B" sort="Cook, Robert B" uniqKey="Cook R" first="Robert B." last="Cook">Robert B. Cook</name>
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<author><name sortKey="Devarakonda, Ranjeet" sort="Devarakonda, Ranjeet" uniqKey="Devarakonda R" first="Ranjeet" last="Devarakonda">Ranjeet Devarakonda</name>
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<author><name sortKey="Green, Jim" sort="Green, Jim" uniqKey="Green J" first="Jim" last="Green">Jim Green</name>
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<author><name sortKey="Palanisamy, Giri" sort="Palanisamy, Giri" uniqKey="Palanisamy G" first="Giri" last="Palanisamy">Giri Palanisamy</name>
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<author><name sortKey="Alexander, Paul" sort="Alexander, Paul" uniqKey="Alexander P" first="Paul" last="Alexander">Paul Alexander</name>
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<author><name sortKey="Noy, Natalya F" sort="Noy, Natalya F" uniqKey="Noy N" first="Natalya F." last="Noy">Natalya F. Noy</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies</title>
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<author><name sortKey="Branstetter, Marcia L" sort="Branstetter, Marcia L" uniqKey="Branstetter M" first="Marcia L." last="Branstetter">Marcia L. Branstetter</name>
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<author><name sortKey="Devarakonda, Ranjeet" sort="Devarakonda, Ranjeet" uniqKey="Devarakonda R" first="Ranjeet" last="Devarakonda">Ranjeet Devarakonda</name>
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<author><name sortKey="Green, Jim" sort="Green, Jim" uniqKey="Green J" first="Jim" last="Green">Jim Green</name>
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<author><name sortKey="Palanisamy, Giri" sort="Palanisamy, Giri" uniqKey="Palanisamy G" first="Giri" last="Palanisamy">Giri Palanisamy</name>
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<author><name sortKey="Alexander, Paul" sort="Alexander, Paul" uniqKey="Alexander P" first="Paul" last="Alexander">Paul Alexander</name>
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<series><title level="j">Earth science informatics</title>
<idno type="ISSN">1865-0473</idno>
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<imprint><date when="2013">2013</date>
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<front><div type="abstract" xml:lang="en"><p id="P1"><italic>Linked Science</italic>
is the practice of inter-connecting scientific assets by publishing, sharing and linking scientific data and processes in end-to-end loosely coupled workflows that allow the sharing and re-use of scientific data. Much of this data does not live in the cloud or on the Web, but rather in multi-institutional data centers that provide tools and add value through quality assurance, validation, curation, dissemination, and analysis of the data. In this paper, we make the case for the use of scientific scenarios in Linked Science. We propose a scenario in river-channel transport that requires biogeochemical experimental data and global climate-simulation model data from many sources. We focus on the use of ontologies—formal machine-readable descriptions of the domain—to facilitate search and discovery of this data. Mercury, developed at Oak Ridge National Laboratory, is a tool for distributed metadata harvesting, search and retrieval. Mercury currently provides uniform access to more than 100,000 metadata records; 30,000 scientists use it each month. We augmented search in Mercury with ontologies, such as the ontologies in the Semantic Web for Earth and Environmental Terminology (SWEET) collection by prototyping a component that provides access to the ontology terms from Mercury. We evaluate the coverage of SWEET for the ORNL Distributed Active Archive Center (ORNL DAAC).</p>
</div>
</front>
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<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">101620055</journal-id>
<journal-id journal-id-type="pubmed-jr-id">41943</journal-id>
<journal-id journal-id-type="nlm-ta">Earth Sci Inform</journal-id>
<journal-id journal-id-type="iso-abbrev">Earth Sci Inform</journal-id>
<journal-title-group><journal-title>Earth science informatics</journal-title>
</journal-title-group>
<issn pub-type="ppub">1865-0473</issn>
<issn pub-type="epub">1865-0481</issn>
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<article-meta><article-id pub-id-type="pmid">24416086</article-id>
<article-id pub-id-type="pmc">3883668</article-id>
<article-id pub-id-type="doi">10.1007/s12145-013-0118-2</article-id>
<article-id pub-id-type="manuscript">NIHMS490498</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Pouchard</surname>
<given-names>Line C.</given-names>
</name>
<aff id="A1">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Branstetter</surname>
<given-names>Marcia L.</given-names>
</name>
<aff id="A2">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Cook</surname>
<given-names>Robert B.</given-names>
</name>
<aff id="A3">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Devarakonda</surname>
<given-names>Ranjeet</given-names>
</name>
<aff id="A4">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Green</surname>
<given-names>Jim</given-names>
</name>
<aff id="A5">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Palanisamy</surname>
<given-names>Giri</given-names>
</name>
<aff id="A6">Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN 37831</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Alexander</surname>
<given-names>Paul</given-names>
</name>
<aff id="A7">Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305</aff>
</contrib>
<contrib contrib-type="author"><name><surname>Noy</surname>
<given-names>Natalya F.</given-names>
</name>
<aff id="A8">Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305</aff>
</contrib>
</contrib-group>
<author-notes><corresp id="FN1">Corresponding author: Line C. Pouchard, <email>pouchardlc@ornl.gov</email>
, Telephone: 865-574-6125, Fax: 865-241-4811</corresp>
</author-notes>
<pub-date pub-type="nihms-submitted"><day>27</day>
<month>12</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="ppub"><month>9</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>01</day>
<month>9</month>
<year>2014</year>
</pub-date>
<volume>6</volume>
<issue>3</issue>
<elocation-id>10.1007/s12145-013-0118-2</elocation-id>
<abstract><p id="P1"><italic>Linked Science</italic>
is the practice of inter-connecting scientific assets by publishing, sharing and linking scientific data and processes in end-to-end loosely coupled workflows that allow the sharing and re-use of scientific data. Much of this data does not live in the cloud or on the Web, but rather in multi-institutional data centers that provide tools and add value through quality assurance, validation, curation, dissemination, and analysis of the data. In this paper, we make the case for the use of scientific scenarios in Linked Science. We propose a scenario in river-channel transport that requires biogeochemical experimental data and global climate-simulation model data from many sources. We focus on the use of ontologies—formal machine-readable descriptions of the domain—to facilitate search and discovery of this data. Mercury, developed at Oak Ridge National Laboratory, is a tool for distributed metadata harvesting, search and retrieval. Mercury currently provides uniform access to more than 100,000 metadata records; 30,000 scientists use it each month. We augmented search in Mercury with ontologies, such as the ontologies in the Semantic Web for Earth and Environmental Terminology (SWEET) collection by prototyping a component that provides access to the ontology terms from Mercury. We evaluate the coverage of SWEET for the ORNL Distributed Active Archive Center (ORNL DAAC).</p>
</abstract>
<kwd-group><kwd>Linked Science</kwd>
<kwd>ontologies</kwd>
<kwd>BioPortal</kwd>
<kwd>semantic search</kwd>
<kwd>climate change</kwd>
<kwd>data discovery</kwd>
</kwd-group>
<funding-group><award-group><funding-source country="United States">National Human Genome Research Institute : NHGRI</funding-source>
<award-id>U54 HG004028 || HG</award-id>
</award-group>
</funding-group>
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</front>
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