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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Metagenomic Sequence of Prokaryotic Microbiota from an Intermediate-Salinity Pond of a Saltern in Isla Cristina, Spain</title><author><name sortKey="Fernandez, Ana B" sort="Fernandez, Ana B" uniqKey="Fernandez A" first="Ana B." last="Fernández">Ana B. Fernández</name></author><author><name sortKey="Le N, Maria Jose" sort="Le N, Maria Jose" uniqKey="Le N M" first="María José" last="Le N">María José Le N</name></author><author><name sortKey="Vera, Blanca" sort="Vera, Blanca" uniqKey="Vera B" first="Blanca" last="Vera">Blanca Vera</name></author><author><name sortKey="Sanchez Porro, Cristina" sort="Sanchez Porro, Cristina" uniqKey="Sanchez Porro C" first="Cristina" last="Sánchez-Porro">Cristina Sánchez-Porro</name></author><author><name sortKey="Ventosa, Antonio" sort="Ventosa, Antonio" uniqKey="Ventosa A" first="Antonio" last="Ventosa">Antonio Ventosa</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24526635</idno><idno type="pmc">3924367</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924367</idno><idno type="RBID">PMC:3924367</idno><idno type="doi">10.1128/genomeA.00045-14</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000238</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Metagenomic Sequence of Prokaryotic Microbiota from an Intermediate-Salinity Pond of a Saltern in Isla Cristina, Spain</title><author><name sortKey="Fernandez, Ana B" sort="Fernandez, Ana B" uniqKey="Fernandez A" first="Ana B." last="Fernández">Ana B. Fernández</name></author><author><name sortKey="Le N, Maria Jose" sort="Le N, Maria Jose" uniqKey="Le N M" first="María José" last="Le N">María José Le N</name></author><author><name sortKey="Vera, Blanca" sort="Vera, Blanca" uniqKey="Vera B" first="Blanca" last="Vera">Blanca Vera</name></author><author><name sortKey="Sanchez Porro, Cristina" sort="Sanchez Porro, Cristina" uniqKey="Sanchez Porro C" first="Cristina" last="Sánchez-Porro">Cristina Sánchez-Porro</name></author><author><name sortKey="Ventosa, Antonio" sort="Ventosa, Antonio" uniqKey="Ventosa A" first="Antonio" last="Ventosa">Antonio Ventosa</name></author></analytic><series><title level="j">Genome Announcements</title><idno type="eISSN">2169-8287</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Marine salterns are artificial multipond systems designed for the commercial production of salt by evaporation of seawater. We report here the metagenomic sequence of the prokaryotic microbiota of a pond with intermediate salinity (21% total salts) of a saltern located in Isla Cristina, Huelva, southwest Spain.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ventosa, A" uniqKey="Ventosa A">A Ventosa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oren, A" uniqKey="Oren A">A Oren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ventosa, A" uniqKey="Ventosa A">A Ventosa</name></author><author><name sortKey="Nieto, Jj" uniqKey="Nieto J">JJ Nieto</name></author><author><name sortKey="Oren, A" uniqKey="Oren A">A Oren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De La Haba, Rr" uniqKey="De La Haba R">RR de la Haba</name></author><author><name sortKey="Sanchez Porro, C" uniqKey="Sanchez Porro C">C Sánchez-Porro</name></author><author><name sortKey="Marquez, Mc" uniqKey="Marquez M">MC Marquez</name></author><author><name sortKey="Ventosa, A" uniqKey="Ventosa A">A Ventosa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oren, A" uniqKey="Oren A">A Oren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ant N, J" uniqKey="Ant N J">J Antón</name></author><author><name sortKey="Llobet Brossa, E" uniqKey="Llobet Brossa E">E Llobet-Brossa</name></author><author><name sortKey="Rodriguez Valera, F" uniqKey="Rodriguez Valera F">F Rodríguez-Valera</name></author><author><name sortKey="Amann, R" uniqKey="Amann R">R Amann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ant N, J" uniqKey="Ant N J">J Antón</name></author><author><name sortKey="Rossell Mora, R" uniqKey="Rossell Mora R">R Rosselló-Mora</name></author><author><name sortKey="Rodriguez Valera, F" uniqKey="Rodriguez Valera F">F Rodríguez-Valera</name></author><author><name 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sortKey="Pasi, L" uniqKey="Pasi L">L Pašić</name></author><author><name sortKey="Fernandez, Ab" uniqKey="Fernandez A">AB Fernandez</name></author><author><name sortKey="Martin Cuadrado, Ab" uniqKey="Martin Cuadrado A">AB Martin-Cuadrado</name></author><author><name sortKey="Mizuno, Cm" uniqKey="Mizuno C">CM Mizuno</name></author><author><name sortKey="Mcmahon, Kd" uniqKey="Mcmahon K">KD McMahon</name></author><author><name sortKey="Papke, Rt" uniqKey="Papke R">RT Papke</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author><author><name sortKey="Rodriguez Brito, B" uniqKey="Rodriguez Brito B">B Rodriguez-Brito</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Sanchez Porro, C" uniqKey="Sanchez Porro C">C Sanchez-Porro</name></author><author><name sortKey="Ventosa, A" uniqKey="Ventosa A">A Ventosa</name></author><author><name sortKey="Rodriguez Valera, F" 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Genome Announc</journal-id><journal-id journal-id-type="iso-abbrev">Genome Announc</journal-id><journal-id journal-id-type="hwp">ga</journal-id><journal-id journal-id-type="pmc">ga</journal-id><journal-id journal-id-type="publisher-id">GA</journal-id><journal-title-group><journal-title>Genome Announcements</journal-title></journal-title-group><issn pub-type="epub">2169-8287</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24526635</article-id><article-id pub-id-type="pmc">3924367</article-id><article-id pub-id-type="publisher-id">genomeA00045-14</article-id><article-id pub-id-type="doi">10.1128/genomeA.00045-14</article-id><article-categories><subj-group subj-group-type="heading"><subject>Prokaryotes</subject></subj-group></article-categories><title-group><article-title>Metagenomic Sequence of Prokaryotic Microbiota from an Intermediate-Salinity Pond of a Saltern in Isla Cristina, Spain</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Fernández</surname><given-names>Ana B.</given-names></name></contrib><contrib contrib-type="author"><name><surname>León</surname><given-names>María José</given-names></name></contrib><contrib contrib-type="author"><name><surname>Vera</surname><given-names>Blanca</given-names></name></contrib><contrib contrib-type="author"><name><surname>Sánchez-Porro</surname><given-names>Cristina</given-names></name></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Ventosa</surname><given-names>Antonio</given-names></name></contrib><aff id="aff1">Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain</aff></contrib-group><author-notes><corresp id="cor1">Address correspondence to Antonio Ventosa, <email>ventosa@us.es</email>.</corresp></author-notes><pub-date pub-type="epub"><day>13</day><month>2</month><year>2014</year></pub-date><pub-date pub-type="collection"><season>Jan-Feb</season><year>2014</year></pub-date><volume>2</volume><issue>1</issue><elocation-id>e00045-14</elocation-id><history><date date-type="received"><day>15</day><month>1</month><year>2014</year></date><date date-type="accepted"><day>23</day><month>1</month><year>2014</year></date></history><permissions><copyright-statement>Copyright © 2014 Fernández et al.</copyright-statement><copyright-year>2014</copyright-year><copyright-holder>Fernández et al.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported license</ext-link>.</license-p></license></permissions><self-uri xlink:title="pdf" xlink:type="simple" xlink:href="jga001141039001.pdf"></self-uri><abstract><p>Marine salterns are artificial multipond systems designed for the commercial production of salt by evaporation of seawater. We report here the metagenomic sequence of the prokaryotic microbiota of a pond with intermediate salinity (21% total salts) of a saltern located in Isla Cristina, Huelva, southwest Spain.</p></abstract><counts><page-count count="2"></page-count></counts><custom-meta-group><custom-meta><meta-name>cover-date</meta-name><meta-value>January/February 2014</meta-value></custom-meta><custom-meta><meta-name>access-type</meta-name><meta-value>free</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec><title>GENOME ANNOUNCEMENT</title><p>Marine salterns are composed of interconnected ponds with increasing salt concentrations and they constitute excellent models for studying microbial populations growing along a salinity gradient (<xref rid="B1" ref-type="bibr">1</xref>). They are used for the commercial production of salt by evaporation of seawater (<xref rid="B2" ref-type="bibr">2</xref>). Microbiological studies of these extreme habitats have enabled identification of the microorganisms inhabiting them (<xref rid="B3" ref-type="bibr">3</xref><xref ref-type="bibr" rid="B4">–</xref><xref rid="B5" ref-type="bibr">5</xref>). However, most studies have been focused on the most concentrated hypersaline ponds, designated crystallizers, in which the NaCl is precipitated (<xref rid="B6" ref-type="bibr">6</xref><xref ref-type="bibr" rid="B7">–</xref><xref rid="B8" ref-type="bibr">8</xref>). Molecular studies have shown that the two main prokaryotes which are predominant in these NaCl-saturated ponds are the haloarchaeon <italic>Haloquadratum walsbyi</italic> and the bacteroidete <italic>Salinibacter ruber</italic> (<xref rid="B9" ref-type="bibr">9</xref>, <xref rid="B10" ref-type="bibr">10</xref>). Recent metagenomic studies carried out in the salterns in Santa Pola, east Spain, have confirmed these findings (<xref rid="B11" ref-type="bibr">11</xref>). However, in contrast to the findings of reduced microbial diversity in the highly saline ponds (crystallizers), analysis of the metagenomic data set of an intermediate-salinity pond with 19% salts indicated that a much wider prokaryotic diversity than expected was present (<xref rid="B11" ref-type="bibr">11</xref>). In this report, we describe the sequencing of a prokaryotic metagenome obtained from a pond of intermediate salinity of a marine saltern located in Isla Cristina, Huelva, southwest Spain, on the Atlantic Ocean, far away from the Santa Pola saltern, which is on the Mediterranean coast.</p><p>A 50-liter water sample was obtained from the surface of a pond with 21% total salts (Global Positioning System [GPS] coordinates 37°13′08″N, 7°20′17″W) on July 2010. The sample was sequentially filtered through 5.0- and 0.22-µm-pore size polycarbonate filters (Millipore) as previously described (<xref rid="B11" ref-type="bibr">11</xref>). Total environmental DNA was extracted and purified following the protocols described elsewhere (<xref rid="B11" ref-type="bibr">11</xref>, <xref rid="B12" ref-type="bibr">12</xref>). The purified prokaryotic DNA was sequenced by pyrosequencing (Roche 454 GS-FLX system, Titanium chemistry) by GATC, Constance, Germany. A total of 1,223,923 reads with an average read length of 397 bp were obtained. The size of the metagenomic data set was 486,317,437 bp.</p><p>Sequences related to 16S ribosomal RNA genes were identified using the Ribosomal Database Project (RDP) (<xref rid="B13" ref-type="bibr">13</xref>). In addition, sequences were compared against the MG-RAST server (<xref rid="B14" ref-type="bibr">14</xref>), Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA) (<xref rid="B15" ref-type="bibr">15</xref>), and Integrated Microbial Genomes with Microbiome Samples-Expert Review (IMG/MER) (<xref rid="B16" ref-type="bibr">16</xref>) databases.</p><p><italic>Euryarchaeota</italic> (~84%) was the most abundant phylum present in this sample, followed by <italic>Bacteroidetes</italic> (~8%) and <italic>Gammaproteobacteria</italic> (~7%), suggesting a decrease of the microbial diversity in salt ponds of salterns when the salinity reaches salt concentrations >20%, being more similar to those found in crystallizer ponds than those found in intermediate-salinity ponds with <20% salts.</p><p>Further metagenome analysis will contribute increased understanding of the genetic diversity present in marine salterns and particularly in ponds with intermediate salinities where the environmental conditions limit the presence of halophilic bacteria and enhance the growth of haloarchaea.</p><sec id="h1"><title>Nucleotide sequence accession number.</title><p>The sequences obtained in this project have been deposited in the NCBI Sequence Read Archive under the accession no. <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/sra/?term=SRP029970">SRP029970</ext-link>.</p></sec></sec></body><back><fn-group><fn fn-type="other"><p><bold>Citation</bold> Fernández AB, León MJ, Vera B, Sánchez-Porro C, Ventosa A. 2014. Metagenomic sequence of prokaryotic microbiota from an intermediate-salinity pond of a saltern in Isla Cristina, Spain. Genome Announc. 2(1):e00045-14. doi:10.1128/genomeA.00045-14.</p></fn></fn-group><ack><title>ACKNOWLEDGMENTS</title><p>This research was supported by grants from <funding-source id="GS1">the Spanish Ministry of Science and Innovation</funding-source> (<award-id rid="GS1">CGL2010-19303</award-id>) and the Junta de Andalucía (<award-id id="G1">P10-CVI-6226</award-id>). FEDER funds and the Plan Andaluz de Investigación also supported this project. 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