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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians</title><author><name sortKey="Hartikainen, Hanna" sort="Hartikainen, Hanna" uniqKey="Hartikainen H" first="Hanna" last="Hartikainen">Hanna Hartikainen</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Ashford, Oliver S" sort="Ashford, Oliver S" uniqKey="Ashford O" first="Oliver S" last="Ashford">Oliver S. Ashford</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Berney, Cedric" sort="Berney, Cedric" uniqKey="Berney C" first="Cédric" last="Berney">Cédric Berney</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Okamura, Beth" sort="Okamura, Beth" uniqKey="Okamura B" first="Beth" last="Okamura">Beth Okamura</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Feist, Stephen W" sort="Feist, Stephen W" uniqKey="Feist S" first="Stephen W" last="Feist">Stephen W. Feist</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Baker Austin, Craig" sort="Baker Austin, Craig" uniqKey="Baker Austin C" first="Craig" last="Baker-Austin">Craig Baker-Austin</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Stentiford, Grant D" sort="Stentiford, Grant D" uniqKey="Stentiford G" first="Grant D" last="Stentiford">Grant D. Stentiford</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation><affiliation><nlm:aff id="aff3"><institution>European Union Reference Laboratory for Crustacean Diseases, Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Bass, David" sort="Bass, David" uniqKey="Bass D" first="David" last="Bass">David Bass</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23966100</idno><idno type="pmc">3869015</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3869015</idno><idno type="RBID">PMC:3869015</idno><idno type="doi">10.1038/ismej.2013.136</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000012</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians</title><author><name sortKey="Hartikainen, Hanna" sort="Hartikainen, Hanna" uniqKey="Hartikainen H" first="Hanna" last="Hartikainen">Hanna Hartikainen</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Ashford, Oliver S" sort="Ashford, Oliver S" uniqKey="Ashford O" first="Oliver S" last="Ashford">Oliver S. Ashford</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Berney, Cedric" sort="Berney, Cedric" uniqKey="Berney C" first="Cédric" last="Berney">Cédric Berney</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Okamura, Beth" sort="Okamura, Beth" uniqKey="Okamura B" first="Beth" last="Okamura">Beth Okamura</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Feist, Stephen W" sort="Feist, Stephen W" uniqKey="Feist S" first="Stephen W" last="Feist">Stephen W. Feist</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Baker Austin, Craig" sort="Baker Austin, Craig" uniqKey="Baker Austin C" first="Craig" last="Baker-Austin">Craig Baker-Austin</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Stentiford, Grant D" sort="Stentiford, Grant D" uniqKey="Stentiford G" first="Grant D" last="Stentiford">Grant D. Stentiford</name><affiliation><nlm:aff id="aff2"><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation><affiliation><nlm:aff id="aff3"><institution>European Union Reference Laboratory for Crustacean Diseases, Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></nlm:aff></affiliation></author><author><name sortKey="Bass, David" sort="Bass, David" uniqKey="Bass D" first="David" last="Bass">David Bass</name><affiliation><nlm:aff id="aff1"><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></nlm:aff></affiliation></author></analytic><series><title level="j">The ISME Journal</title><idno type="ISSN">1751-7362</idno><idno type="eISSN">1751-7370</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Haplosporidians are rhizarian parasites of mostly marine invertebrates. They include the causative agents of diseases of commercially important molluscs, including MSX disease in oysters. Despite their importance for food security, their diversity and distributions are poorly known. We used a combination of group-specific PCR primers to probe environmental DNA samples from planktonic and benthic environments in Europe, South Africa and Panama. This revealed several highly distinct novel clades, novel lineages within known clades and seasonal (spring vs autumn) and habitat-related (brackish vs littoral) variation in assemblage composition. High frequencies of haplosporidian lineages in the water column provide the first evidence for life cycles involving planktonic hosts, host-free stages or both. The general absence of haplosporidian lineages from all large online sequence data sets emphasises the importance of lineage-specific approaches for studying these highly divergent and diverse lineages. Combined with host-based field surveys, environmental sampling for pathogens will enhance future detection of known and novel pathogens and the assessment of disease risk.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">ISME J</journal-id><journal-id journal-id-type="iso-abbrev">ISME J</journal-id><journal-title-group><journal-title>The ISME Journal</journal-title></journal-title-group><issn pub-type="ppub">1751-7362</issn><issn pub-type="epub">1751-7370</issn><publisher><publisher-name>Nature Publishing Group</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23966100</article-id><article-id pub-id-type="pmc">3869015</article-id><article-id pub-id-type="pii">ismej2013136</article-id><article-id pub-id-type="doi">10.1038/ismej.2013.136</article-id><article-categories><subj-group subj-group-type="heading"><subject>Original Article</subject></subj-group></article-categories><title-group><article-title>Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians</article-title><alt-title alt-title-type="running">Haplosporidian diversity</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Hartikainen</surname><given-names>Hanna</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="corresp" rid="caf1">*</xref></contrib><contrib contrib-type="author"><name><surname>Ashford</surname><given-names>Oliver S</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Berney</surname><given-names>Cédric</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Okamura</surname><given-names>Beth</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Feist</surname><given-names>Stephen W</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Baker-Austin</surname><given-names>Craig</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Stentiford</surname><given-names>Grant D</given-names></name><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Bass</surname><given-names>David</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><aff id="aff1"><label>1</label><institution>Department of Life Sciences, The Natural History Museum</institution>, London,<country>UK</country></aff><aff id="aff2"><label>2</label><institution>Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></aff><aff id="aff3"><label>3</label><institution>European Union Reference Laboratory for Crustacean Diseases, Centre for Environment, Fisheries and Aquaculture Science (Cefas)</institution>, The Nothe,<country>UK</country></aff></contrib-group><author-notes><corresp id="caf1"><label>*</label><institution>Department of Life Sciences, The Natural History Museum</institution>, London SW7 5BD, <country>UK</country>. E-mail: <email>h.hartikainen@nhm.ac.uk</email></corresp></author-notes><pub-date pub-type="ppub"><month>01</month><year>2014</year></pub-date><pub-date pub-type="epub"><day>22</day><month>08</month><year>2013</year></pub-date><volume>8</volume><issue>1</issue><fpage>177</fpage><lpage>186</lpage><history><date date-type="received"><day>15</day><month>03</month><year>2013</year></date><date date-type="rev-recd"><day>12</day><month>06</month><year>2013</year></date><date date-type="accepted"><day>09</day><month>07</month><year>2013</year></date></history><permissions><copyright-statement>Copyright © 2014 International Society for Microbial Ecology</copyright-statement><copyright-year>2014</copyright-year><copyright-holder>International Society for Microbial Ecology</copyright-holder></permissions><abstract><p>Haplosporidians are rhizarian parasites of mostly marine invertebrates. They include the causative agents of diseases of commercially important molluscs, including MSX disease in oysters. Despite their importance for food security, their diversity and distributions are poorly known. We used a combination of group-specific PCR primers to probe environmental DNA samples from planktonic and benthic environments in Europe, South Africa and Panama. This revealed several highly distinct novel clades, novel lineages within known clades and seasonal (spring vs autumn) and habitat-related (brackish vs littoral) variation in assemblage composition. High frequencies of haplosporidian lineages in the water column provide the first evidence for life cycles involving planktonic hosts, host-free stages or both. The general absence of haplosporidian lineages from all large online sequence data sets emphasises the importance of lineage-specific approaches for studying these highly divergent and diverse lineages. Combined with host-based field surveys, environmental sampling for pathogens will enhance future detection of known and novel pathogens and the assessment of disease risk.</p></abstract><kwd-group><kwd>Ascetosporea</kwd><kwd>Haplosporidia</kwd><kwd><italic>Haplosporidium</italic></kwd><kwd><italic>Minchinia</italic></kwd><kwd><italic>Bonamia</italic></kwd><kwd><italic>Urosporidium</italic></kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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