Links to Exploration step
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization</title><author><name sortKey="Beja, Oded" sort="Beja, Oded" uniqKey="Beja O" first="Oded" last="Béjà">Oded Béjà</name><affiliation><nlm:aff id="aff1"><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author><author><name sortKey="Fridman, Svetlana" sort="Fridman, Svetlana" uniqKey="Fridman S" first="Svetlana" last="Fridman">Svetlana Fridman</name><affiliation><nlm:aff id="aff1"><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author><author><name sortKey="Glaser, Fabian" sort="Glaser, Fabian" uniqKey="Glaser F" first="Fabian" last="Glaser">Fabian Glaser</name><affiliation><nlm:aff id="aff2"><institution>Bioinformatics Knowledge Unit, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">22456446</idno><idno type="pmc">3400403</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400403</idno><idno type="RBID">PMC:3400403</idno><idno type="doi">10.1038/ismej.2012.23</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000000</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization</title><author><name sortKey="Beja, Oded" sort="Beja, Oded" uniqKey="Beja O" first="Oded" last="Béjà">Oded Béjà</name><affiliation><nlm:aff id="aff1"><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author><author><name sortKey="Fridman, Svetlana" sort="Fridman, Svetlana" uniqKey="Fridman S" first="Svetlana" last="Fridman">Svetlana Fridman</name><affiliation><nlm:aff id="aff1"><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author><author><name sortKey="Glaser, Fabian" sort="Glaser, Fabian" uniqKey="Glaser F" first="Fabian" last="Glaser">Fabian Glaser</name><affiliation><nlm:aff id="aff2"><institution>Bioinformatics Knowledge Unit, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></nlm:aff></affiliation></author></analytic><series><title level="j">The ISME Journal</title><idno type="ISSN">1751-7362</idno><idno type="eISSN">1751-7370</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Cyanobacteria have a key role in marine photosynthesis, which contributes to the global carbon cycle and to the world oxygen supply. Genes encoding for photosystem-II (PSII) and photosystem-I (PSI) reaction centers are found in different cyanophage genomes, and it was suggested that the horizontal transfer of these genes might be involved in increasing phage fitness. We have further analyzed a rare viral Global Ocean Sampling (GOS) clone containing PSI genes. This clone contains the unusual PSI gene organization <italic>psaD</italic>-><italic>C</italic>-><italic>A</italic>, as opposed to the more frequently observed viral <italic>psaJF</italic>-><italic>C</italic>-><italic>A</italic>-><italic>B</italic>-><italic>K</italic>-><italic>E</italic>-><italic>D</italic> organization, and was detected only once in the GOS metagenome. Our analyses identified more occurrences with similar arrangement and indicate that this PSI viral gene organization (now <italic>psaD</italic>-><italic>C</italic>-><italic>A</italic>-><italic>B</italic>), although rare, is authentic and represents a new PSI gene arrangement.</p></div></front></TEI><pmc article-type="letter"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">ISME J</journal-id><journal-id journal-id-type="iso-abbrev">ISME J</journal-id><journal-title-group><journal-title>The ISME Journal</journal-title></journal-title-group><issn pub-type="ppub">1751-7362</issn><issn pub-type="epub">1751-7370</issn><publisher><publisher-name>Nature Publishing Group</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">22456446</article-id><article-id pub-id-type="pmc">3400403</article-id><article-id pub-id-type="pii">ismej201223</article-id><article-id pub-id-type="doi">10.1038/ismej.2012.23</article-id><article-categories><subj-group subj-group-type="heading"><subject>Short Communication</subject></subj-group></article-categories><title-group><article-title>Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization</article-title><alt-title alt-title-type="running">Viral clones from the GOS expedition</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Béjà</surname><given-names>Oded</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="corresp" rid="caf1">*</xref></contrib><contrib contrib-type="author"><name><surname>Fridman</surname><given-names>Svetlana</given-names></name><xref ref-type="aff" rid="aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Glaser</surname><given-names>Fabian</given-names></name><xref ref-type="aff" rid="aff2">2</xref></contrib><aff id="aff1"><label>1</label><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></aff><aff id="aff2"><label>2</label><institution>Bioinformatics Knowledge Unit, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa,<country>Israel</country></aff></contrib-group><author-notes><corresp id="caf1"><label>*</label><institution>Faculty of Biology, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology</institution>, Haifa 32000, <country>Israel</country>. E-mail: <email>beja@tx.technion.ac.il</email></corresp></author-notes><pub-date pub-type="ppub"><month>08</month><year>2012</year></pub-date><pub-date pub-type="epub"><day>29</day><month>03</month><year>2012</year></pub-date><volume>6</volume><issue>8</issue><fpage>1617</fpage><lpage>1620</lpage><history><date date-type="received"><day>09</day><month>01</month><year>2012</year></date><date date-type="rev-recd"><day>16</day><month>02</month><year>2012</year></date><date date-type="accepted"><day>17</day><month>02</month><year>2012</year></date></history><permissions><copyright-statement>Copyright © 2012 International Society for Microbial Ecology</copyright-statement><copyright-year>2012</copyright-year><copyright-holder>International Society for Microbial Ecology</copyright-holder></permissions><abstract><p>Cyanobacteria have a key role in marine photosynthesis, which contributes to the global carbon cycle and to the world oxygen supply. Genes encoding for photosystem-II (PSII) and photosystem-I (PSI) reaction centers are found in different cyanophage genomes, and it was suggested that the horizontal transfer of these genes might be involved in increasing phage fitness. We have further analyzed a rare viral Global Ocean Sampling (GOS) clone containing PSI genes. This clone contains the unusual PSI gene organization <italic>psaD</italic>-><italic>C</italic>-><italic>A</italic>, as opposed to the more frequently observed viral <italic>psaJF</italic>-><italic>C</italic>-><italic>A</italic>-><italic>B</italic>-><italic>K</italic>-><italic>E</italic>-><italic>D</italic> organization, and was detected only once in the GOS metagenome. Our analyses identified more occurrences with similar arrangement and indicate that this PSI viral gene organization (now <italic>psaD</italic>-><italic>C</italic>-><italic>A</italic>-><italic>B</italic>), although rare, is authentic and represents a new PSI gene arrangement.</p></abstract><kwd-group><kwd>photosystem I</kwd><kwd>phage</kwd><kwd>cyanobacteria</kwd><kwd><italic>Synechococcus</italic></kwd><kwd><italic>Prochlorococcus</italic></kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Pmc/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000000 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Corpus/biblio.hfd -nk 000000 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Ticri/CIDE
|area= CyberinfraV1
|flux= Pmc
|étape= Corpus
|type= RBID
|clé=
|texte=
}}
| This area was generated with Dilib version V0.6.25. |  |