Opportunities and challenges for digital morphology
Identifieur interne : 000564 ( Pmc/Checkpoint ); précédent : 000563; suivant : 000565Opportunities and challenges for digital morphology
Auteurs : Alexander Ziegler [Allemagne] ; Malte Ogurreck [Allemagne] ; Thomas Steinke [Allemagne] ; Felix Beckmann [Allemagne] ; Steffen Prohaska [Allemagne] ; Andreas Ziegler [Allemagne]Source :
- Biology Direct [ 1745-6150 ] ; 2010.
Abstract
Advances in digital data acquisition, analysis, and storage have revolutionized the work in many biological disciplines such as genomics, molecular phylogenetics, and structural biology, but have not yet found satisfactory acceptance in morphology. Improvements in non-invasive imaging and three-dimensional visualization techniques, however, permit high-throughput analyses also of whole biological specimens, including museum material. These developments pave the way towards a digital era in morphology. Using sea urchins (Echinodermata: Echinoidea), we provide examples illustrating the power of these techniques. However, remote visualization, the creation of a specialized database, and the implementation of standardized, world-wide accepted data deposition practices prior to publication are essential to cope with the foreseeable exponential increase in digital morphological data.
This article was reviewed by Marc D. Sutton (nominated by Stephan Beck), Gonzalo Giribet (nominated by Lutz Walter), and Lennart Olsson (nominated by Purificación López-García).
Url:
DOI: 10.1186/1745-6150-5-45
PubMed: 20604956
PubMed Central: 2908069
Affiliations:
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Benjamin Franklin, Freie Universität Berlin, Thielallee 73, 14195 Berlin, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institut für Immungenetik, Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin, Freie Universität Berlin, Thielallee 73, 14195 Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author></analytic><series><title level="j">Biology Direct</title><idno type="eISSN">1745-6150</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Advances in digital data acquisition, analysis, and storage have revolutionized the work in many biological disciplines such as genomics, molecular phylogenetics, and structural biology, but have not yet found satisfactory acceptance in morphology. Improvements in non-invasive imaging and three-dimensional visualization techniques, however, permit high-throughput analyses also of whole biological specimens, including museum material. These developments pave the way towards a digital era in morphology. Using sea urchins (Echinodermata: Echinoidea), we provide examples illustrating the power of these techniques. However, remote visualization, the creation of a specialized database, and the implementation of standardized, world-wide accepted data deposition practices prior to publication are essential to cope with the foreseeable exponential increase in digital morphological data.</p><sec><title>Reviewers</title><p>This article was reviewed by Marc D. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Biol Direct</journal-id><journal-title-group><journal-title>Biology Direct</journal-title></journal-title-group><issn pub-type="epub">1745-6150</issn><publisher><publisher-name>BioMed Central</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">20604956</article-id><article-id pub-id-type="pmc">2908069</article-id><article-id pub-id-type="publisher-id">1745-6150-5-45</article-id><article-id pub-id-type="doi">10.1186/1745-6150-5-45</article-id><article-categories><subj-group subj-group-type="heading"><subject>Comment</subject></subj-group></article-categories><title-group><article-title>Opportunities and challenges for digital morphology</article-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes" id="A1"><name><surname>Ziegler</surname><given-names>Alexander</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>alexander.ziegler@charite.de</email></contrib><contrib contrib-type="author" id="A2"><name><surname>Ogurreck</surname><given-names>Malte</given-names></name><xref ref-type="aff" rid="I2">2</xref><email>malte.ogurreck@gkss.de</email></contrib><contrib contrib-type="author" id="A3"><name><surname>Steinke</surname><given-names>Thomas</given-names></name><xref ref-type="aff" rid="I3">3</xref><email>steinke@zib.de</email></contrib><contrib contrib-type="author" id="A4"><name><surname>Beckmann</surname><given-names>Felix</given-names></name><xref ref-type="aff" rid="I2">2</xref><email>felix.beckmann@gkss.de</email></contrib><contrib contrib-type="author" id="A5"><name><surname>Prohaska</surname><given-names>Steffen</given-names></name><xref ref-type="aff" rid="I3">3</xref><email>prohaska@zib.de</email></contrib><contrib contrib-type="author" id="A6"><name><surname>Ziegler</surname><given-names>Andreas</given-names></name><xref ref-type="aff" rid="I1">1</xref><email>andreas.ziegler@charite.de</email></contrib></contrib-group><aff id="I1"><label>1</label>Institut für Immungenetik, Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin, Freie Universität Berlin, Thielallee 73, 14195 Berlin, Germany</aff><aff id="I2"><label>2</label>GKSS-Forschungszentrum Geesthacht, Institut für Werkstoffforschung, Max-Planck-Strasse 1, 21502 Geesthacht, Germany</aff><aff id="I3"><label>3</label>Zuse Institute Berlin, Takustrasse 7, 14195 Berlin, Germany</aff><pub-date pub-type="collection"><year>2010</year></pub-date><pub-date pub-type="epub"><day>6</day><month>7</month><year>2010</year></pub-date><volume>5</volume><fpage>45</fpage><lpage>45</lpage><history><date date-type="received"><day>25</day><month>6</month><year>2010</year></date><date date-type="accepted"><day>6</day><month>7</month><year>2010</year></date></history><permissions><copyright-statement>Copyright ©2010 Ziegler et al; licensee BioMed Central Ltd.</copyright-statement><copyright-year>2010</copyright-year><copyright-holder>Ziegler et al; licensee BioMed Central Ltd.</copyright-holder><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/2.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/2.0">http://creativecommons.org/licenses/by/2.0</ext-link>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><self-uri xlink:href="http://www.biology-direct.com/content/5/1/45"></self-uri><abstract><p>Advances in digital data acquisition, analysis, and storage have revolutionized the work in many biological disciplines such as genomics, molecular phylogenetics, and structural biology, but have not yet found satisfactory acceptance in morphology. Improvements in non-invasive imaging and three-dimensional visualization techniques, however, permit high-throughput analyses also of whole biological specimens, including museum material. These developments pave the way towards a digital era in morphology. Using sea urchins (Echinodermata: Echinoidea), we provide examples illustrating the power of these techniques. However, remote visualization, the creation of a specialized database, and the implementation of standardized, world-wide accepted data deposition practices prior to publication are essential to cope with the foreseeable exponential increase in digital morphological data.</p><sec><title>Reviewers</title><p>This article was reviewed by Marc D. Sutton (nominated by Stephan Beck), Gonzalo Giribet (nominated by Lutz Walter), and Lennart Olsson (nominated by Purificación López-García).</p></sec></abstract></article-meta></front></pmc><affiliations><list><country><li>Allemagne</li></country><region><li>Berlin</li></region><settlement><li>Berlin</li></settlement></list><tree><country name="Allemagne"><region name="Berlin"><name sortKey="Ziegler, Alexander" sort="Ziegler, Alexander" uniqKey="Ziegler A" first="Alexander" last="Ziegler">Alexander Ziegler</name></region><name sortKey="Beckmann, Felix" sort="Beckmann, Felix" uniqKey="Beckmann F" first="Felix" last="Beckmann">Felix Beckmann</name><name sortKey="Ogurreck, Malte" sort="Ogurreck, Malte" uniqKey="Ogurreck M" first="Malte" last="Ogurreck">Malte Ogurreck</name><name sortKey="Prohaska, Steffen" sort="Prohaska, Steffen" uniqKey="Prohaska S" first="Steffen" last="Prohaska">Steffen Prohaska</name><name sortKey="Steinke, Thomas" sort="Steinke, Thomas" uniqKey="Steinke T" first="Thomas" last="Steinke">Thomas Steinke</name><name sortKey="Ziegler, Andreas" sort="Ziegler, Andreas" uniqKey="Ziegler A" first="Andreas" last="Ziegler">Andreas Ziegler</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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