The RNA modification database, RNAMDB: 2011 update
Identifieur interne : 000545 ( Pmc/Checkpoint ); précédent : 000544; suivant : 000546The RNA modification database, RNAMDB: 2011 update
Auteurs : William A. Cantara [États-Unis] ; Pamela F. Crain [États-Unis] ; Jef Rozenski [Belgique] ; James A. Mccloskey [États-Unis] ; Kimberly A. Harris [États-Unis] ; Xiaonong Zhang [États-Unis] ; Franck A. P. Vendeix [États-Unis] ; Daniele Fabris [États-Unis] ; Paul F. Agris [États-Unis]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2010.
Abstract
Since its inception in 1994,
Url:
DOI: 10.1093/nar/gkq1028
PubMed: 21071406
PubMed Central: 3013656
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
PMC:3013656Le document en format XML
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Crain</name><affiliation wicri:level="2"><nlm:aff id="AFF1">Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820</wicri:regionArea><placeName><region type="state">Utah</region></placeName></affiliation></author><author><name sortKey="Rozenski, Jef" sort="Rozenski, Jef" uniqKey="Rozenski J" first="Jef" last="Rozenski">Jef Rozenski</name><affiliation wicri:level="1"><nlm:aff id="AFF1">Laboratory of Medicinal Chemistry, Rega Institute for Medical Research, Minderbroedersstraat 10, B 3000 Leuven, Belgium,</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Medicinal Chemistry, Rega Institute for Medical Research, Minderbroedersstraat 10, B 3000 Leuven</wicri:regionArea><wicri:noRegion>B 3000 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Mccloskey, James A" sort="Mccloskey, James A" uniqKey="Mccloskey J" first="James A." last="Mccloskey">James A. 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P." last="Vendeix">Franck A. P. Vendeix</name><affiliation wicri:level="2"><nlm:aff id="AFF1">Sirga Advanced Biopharma, Inc., 2 Davis Drive, P.O. Box 13169, Research Triangle Park, NC 22709, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Sirga Advanced Biopharma, Inc., 2 Davis Drive, P.O. 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Agris</name><affiliation wicri:level="2"><nlm:aff id="AFF1">The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21071406</idno><idno type="pmc">3013656</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013656</idno><idno type="RBID">PMC:3013656</idno><idno type="doi">10.1093/nar/gkq1028</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000584</idno><idno type="wicri:Area/Pmc/Curation">000584</idno><idno type="wicri:Area/Pmc/Checkpoint">000545</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The RNA modification database, RNAMDB: 2011 update</title><author><name sortKey="Cantara, William A" sort="Cantara, William A" uniqKey="Cantara W" first="William A." last="Cantara">William A. Cantara</name><affiliation wicri:level="2"><nlm:aff id="AFF1">The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author><author><name sortKey="Crain, Pamela F" sort="Crain, Pamela F" uniqKey="Crain P" first="Pamela F." last="Crain">Pamela F. Crain</name><affiliation wicri:level="2"><nlm:aff id="AFF1">Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820</wicri:regionArea><placeName><region type="state">Utah</region></placeName></affiliation></author><author><name sortKey="Rozenski, Jef" sort="Rozenski, Jef" uniqKey="Rozenski J" first="Jef" last="Rozenski">Jef Rozenski</name><affiliation wicri:level="1"><nlm:aff id="AFF1">Laboratory of Medicinal Chemistry, Rega Institute for Medical Research, Minderbroedersstraat 10, B 3000 Leuven, Belgium,</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Medicinal Chemistry, Rega Institute for Medical Research, Minderbroedersstraat 10, B 3000 Leuven</wicri:regionArea><wicri:noRegion>B 3000 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Mccloskey, James A" sort="Mccloskey, James A" uniqKey="Mccloskey J" first="James A." last="Mccloskey">James A. Mccloskey</name><affiliation wicri:level="2"><nlm:aff id="AFF1">Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820</wicri:regionArea><placeName><region type="state">Utah</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="AFF1">Department of Biochemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Utah</region></placeName><wicri:cityArea>Department of Biochemistry, University of Utah, 30 S. 2000 East, Salt Lake City</wicri:cityArea></affiliation></author><author><name sortKey="Harris, Kimberly A" sort="Harris, Kimberly A" uniqKey="Harris K" first="Kimberly A." last="Harris">Kimberly A. Harris</name><affiliation wicri:level="2"><nlm:aff id="AFF1">The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author><author><name sortKey="Zhang, Xiaonong" sort="Zhang, Xiaonong" uniqKey="Zhang X" first="Xiaonong" last="Zhang">Xiaonong Zhang</name><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="AFF1">College of Arts and Sciences, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>College of Arts and Sciences, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author><author><name sortKey="Vendeix, Franck A P" sort="Vendeix, Franck A P" uniqKey="Vendeix F" first="Franck A. P." last="Vendeix">Franck A. P. Vendeix</name><affiliation wicri:level="2"><nlm:aff id="AFF1">Sirga Advanced Biopharma, Inc., 2 Davis Drive, P.O. Box 13169, Research Triangle Park, NC 22709, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Sirga Advanced Biopharma, Inc., 2 Davis Drive, P.O. Box 13169, Research Triangle Park, NC 22709</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author><author><name sortKey="Fabris, Daniele" sort="Fabris, Daniele" uniqKey="Fabris D" first="Daniele" last="Fabris">Daniele Fabris</name><affiliation wicri:level="2"><nlm:aff id="AFF1">The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author><author><name sortKey="Agris, Paul F" sort="Agris, Paul F" uniqKey="Agris P" first="Paul F." last="Agris">Paul F. Agris</name><affiliation wicri:level="2"><nlm:aff id="AFF1">The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany</wicri:cityArea></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Since its inception in 1994, <italic>The RNA Modification Database</italic> (RNAMDB, <ext-link ext-link-type="uri" xlink:href="http://rna-mdb.cas.albany.edu/RNAmods/">http://rna-mdb.cas.albany.edu/RNAmods/</ext-link>) has served as a focal point for information pertaining to naturally occurring RNA modifications. In its current state, the database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 currently known RNA modifications. Each entry provides the chemical structure, common name and symbol, elemental composition and mass, CA registry numbers and index name, phylogenetic source, type of RNA species in which it is found, and references to the first reported structure determination and synthesis. Though newly transferred in its entirety to The RNA Institute, the RNAMDB continues to grow with two notable additions, agmatidine and 8-methyladenosine, appended in the last year. <italic>The RNA Modification Database</italic> is staying up-to-date with significant improvements being prepared for inclusion within the next year and the following year. The expanded future role of The RNA Modification Database will be to serve as a primary information portal for researchers across the entire spectrum of RNA-related research.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Czerwoniec, A" uniqKey="Czerwoniec A">A Czerwoniec</name></author><author><name sortKey="Dunin Horkawicz, S" uniqKey="Dunin Horkawicz S">S Dunin-Horkawicz</name></author><author><name sortKey="Purta, E" uniqKey="Purta E">E Purta</name></author><author><name sortKey="Kaminska, Kh" uniqKey="Kaminska K">KH Kaminska</name></author><author><name sortKey="Kasprzak, Jm" uniqKey="Kasprzak J">JM Kasprzak</name></author><author><name sortKey="Bujnicki, Jm" uniqKey="Bujnicki J">JM Bujnicki</name></author><author><name sortKey="Grosjean, H" uniqKey="Grosjean H">H Grosjean</name></author><author><name sortKey="Rother, K" uniqKey="Rother K">K Rother</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Nucleic Acids Res</journal-id><journal-id journal-id-type="publisher-id">nar</journal-id><journal-id journal-id-type="hwp">nar</journal-id><journal-title-group><journal-title>Nucleic Acids Research</journal-title></journal-title-group><issn pub-type="ppub">0305-1048</issn><issn pub-type="epub">1362-4962</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">21071406</article-id><article-id pub-id-type="pmc">3013656</article-id><article-id pub-id-type="doi">10.1093/nar/gkq1028</article-id><article-id pub-id-type="publisher-id">gkq1028</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>The RNA modification database, RNAMDB: 2011 update</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Cantara</surname><given-names>William A.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Crain</surname><given-names>Pamela F.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rozenski</surname><given-names>Jef</given-names></name><xref ref-type="aff" rid="AFF1"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>McCloskey</surname><given-names>James A.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>2</sup></xref><xref ref-type="aff" rid="AFF1"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Harris</surname><given-names>Kimberly A.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Xiaonong</given-names></name><xref ref-type="aff" rid="AFF1"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Vendeix</surname><given-names>Franck A. P.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>6</sup></xref></contrib><contrib contrib-type="author"><name><surname>Fabris</surname><given-names>Daniele</given-names></name><xref ref-type="aff" rid="AFF1"><sup>1</sup></xref><xref ref-type="corresp" rid="COR1">*</xref></contrib><contrib contrib-type="author"><name><surname>Agris</surname><given-names>Paul F.</given-names></name><xref ref-type="aff" rid="AFF1"><sup>1</sup></xref><xref ref-type="corresp" rid="COR1">*</xref></contrib></contrib-group><aff id="AFF1"><sup>1</sup>The RNA Institute, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222,<sup>2</sup>Department of Medicinal Chemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820, USA,<sup>3</sup>Laboratory of Medicinal Chemistry, Rega Institute for Medical Research, Minderbroedersstraat 10, B 3000 Leuven, Belgium,<sup>4</sup>Department of Biochemistry, University of Utah, 30 S. 2000 East, Salt Lake City, UT 84112-5820,<sup>5</sup>College of Arts and Sciences, University at Albany, State University of New York, 1400 Washington Avenue, Albany, NY 12222 and<sup>6</sup>Sirga Advanced Biopharma, Inc., 2 Davis Drive, P.O. Box 13169, Research Triangle Park, NC 22709, USA</aff><author-notes><corresp id="COR1">*To whom correspondence should be addressed. Tel: <phone>+1 518 437 4448</phone>; Fax: <fax>+1 518 437 4456</fax>; Email: <email>PAgris@albany.edu</email></corresp><corresp>Correspondence may also be addressed to Daniele Fabris. Tel: <phone>+1 518 437 4464</phone>; Fax: <fax>+1 518 442 3462</fax>; Email: <email>fabris@albany.edu</email></corresp><fn><p>Present addresses: Paul F. Agris, The RNA Institute, University at Albany-SUNY, Life Sciences Research Building Room 1076, 1400 Washington Avenue, Albany, NY 12222, USA.</p></fn><fn><p>Daniele Fabris, The RNA Institute, University at Albany-SUNY, Life Sciences Research Building Room 1109, 1400 Washington Avenue, Albany, NY 12222, USA.</p></fn></author-notes><pmc-comment>For NAR both ppub and collection dates generated for PMC processing 1/27/05 beck</pmc-comment>
<pub-date pub-type="collection"><month>1</month><year>2011</year></pub-date><pub-date pub-type="ppub"><month>1</month><year>2011</year></pub-date><pub-date pub-type="epub"><day>10</day><month>11</month><year>2010</year></pub-date><pub-date pub-type="pmc-release"><day>10</day><month>11</month><year>2010</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>39</volume><issue>Database issue</issue><issue-title>Database issue</issue-title><fpage>D195</fpage><lpage>D201</lpage><history><date date-type="received"><day>30</day><month>9</month><year>2010</year></date><date date-type="rev-recd"><day>7</day><month>10</month><year>2010</year></date><date date-type="accepted"><day>10</day><month>10</month><year>2010</year></date></history><permissions><copyright-statement>© The Author(s) 2010. Published by Oxford University Press.</copyright-statement><copyright-year>2010</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by-nc/2.5"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/2.5">http://creativecommons.org/licenses/by-nc/2.5</ext-link>), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><abstract><p>Since its inception in 1994, <italic>The RNA Modification Database</italic> (RNAMDB, <ext-link ext-link-type="uri" xlink:href="http://rna-mdb.cas.albany.edu/RNAmods/">http://rna-mdb.cas.albany.edu/RNAmods/</ext-link>) has served as a focal point for information pertaining to naturally occurring RNA modifications. In its current state, the database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 currently known RNA modifications. Each entry provides the chemical structure, common name and symbol, elemental composition and mass, CA registry numbers and index name, phylogenetic source, type of RNA species in which it is found, and references to the first reported structure determination and synthesis. Though newly transferred in its entirety to The RNA Institute, the RNAMDB continues to grow with two notable additions, agmatidine and 8-methyladenosine, appended in the last year. <italic>The RNA Modification Database</italic> is staying up-to-date with significant improvements being prepared for inclusion within the next year and the following year. The expanded future role of The RNA Modification Database will be to serve as a primary information portal for researchers across the entire spectrum of RNA-related research.</p></abstract></article-meta></front></pmc><affiliations><list><country><li>Belgique</li><li>États-Unis</li></country><region><li>Caroline du Nord</li><li>Utah</li><li>État de New York</li></region></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Cantara, William A" sort="Cantara, William A" uniqKey="Cantara W" first="William A." last="Cantara">William A. Cantara</name></region><name sortKey="Agris, Paul F" sort="Agris, Paul F" uniqKey="Agris P" first="Paul F." last="Agris">Paul F. Agris</name><name sortKey="Crain, Pamela F" sort="Crain, Pamela F" uniqKey="Crain P" first="Pamela F." last="Crain">Pamela F. Crain</name><name sortKey="Fabris, Daniele" sort="Fabris, Daniele" uniqKey="Fabris D" first="Daniele" last="Fabris">Daniele Fabris</name><name sortKey="Harris, Kimberly A" sort="Harris, Kimberly A" uniqKey="Harris K" first="Kimberly A." last="Harris">Kimberly A. Harris</name><name sortKey="Mccloskey, James A" sort="Mccloskey, James A" uniqKey="Mccloskey J" first="James A." last="Mccloskey">James A. Mccloskey</name><name sortKey="Mccloskey, James A" sort="Mccloskey, James A" uniqKey="Mccloskey J" first="James A." last="Mccloskey">James A. Mccloskey</name><name sortKey="Vendeix, Franck A P" sort="Vendeix, Franck A P" uniqKey="Vendeix F" first="Franck A. P." last="Vendeix">Franck A. P. Vendeix</name><name sortKey="Zhang, Xiaonong" sort="Zhang, Xiaonong" uniqKey="Zhang X" first="Xiaonong" last="Zhang">Xiaonong Zhang</name></country><country name="Belgique"><noRegion><name sortKey="Rozenski, Jef" sort="Rozenski, Jef" uniqKey="Rozenski J" first="Jef" last="Rozenski">Jef Rozenski</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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