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Assessment and Reconstruction of Novel HSP90 Genes: Duplications, Gains and Losses in Fungal and Animal Lineages

Identifieur interne : 000350 ( Pmc/Checkpoint ); précédent : 000349; suivant : 000351

Assessment and Reconstruction of Novel HSP90 Genes: Duplications, Gains and Losses in Fungal and Animal Lineages

Auteurs : Chrysoula N. Pantzartzi [Grèce, République tchèque] ; Elena Drosopoulou [Grèce] ; Zacharias G. Scouras [Grèce]

Source :

RBID : PMC:3774752

Abstract

Hsp90s, members of the Heat Shock Protein class, protect the structure and function of proteins and play a significant task in cellular homeostasis and signal transduction. In order to determine the number of hsp90 gene copies and encoded proteins in fungal and animal lineages and through that key duplication events that this family has undergone, we collected and evaluated Hsp90 protein sequences and corresponding Expressed Sequence Tags and analyzed available genomes from various taxa. We provide evidence for duplication events affecting either single species or wider taxonomic groups. With regard to Fungi, duplicated genes have been detected in several lineages. In invertebrates, we demonstrate key duplication events in certain clades of Arthropoda and Mollusca, and a possible gene loss event in a hymenopteran family. Finally, we infer that the duplication event responsible for the two (a and b) isoforms in vertebrates occurred probably shortly after the split of Hyperoartia and Gnathostomata.


Url:
DOI: 10.1371/journal.pone.0073217
PubMed: 24066039
PubMed Central: 3774752


Affiliations:


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PMC:3774752

Le document en format XML

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<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS One</journal-id>
<journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id>
<journal-title-group>
<journal-title>PLoS ONE</journal-title>
</journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">24066039</article-id>
<article-id pub-id-type="pmc">3774752</article-id>
<article-id pub-id-type="publisher-id">PONE-D-13-03124</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0073217</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Assessment and Reconstruction of Novel HSP90 Genes: Duplications, Gains and Losses in Fungal and Animal Lineages</article-title>
<alt-title alt-title-type="running-head">Novel HSP90 Genes in Fungal and Animal Lineages</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Pantzartzi</surname>
<given-names>Chrysoula N.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="cor1">
<sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Drosopoulou</surname>
<given-names>Elena</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Scouras</surname>
<given-names>Zacharias G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<label>1</label>
<addr-line>Department of Genetics, Development and Molecular Biology, School of Biology, Faculty of Sciences, Aristotle University of Thessaloniki, Thessaloniki, Greece</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Department of Transcriptional Regulation, Institute of Molecular Genetics, Prague, Czech Republic</addr-line>
</aff>
<contrib-group>
<contrib contrib-type="editor">
<name>
<surname>Brochier-Armanet</surname>
<given-names>Celine</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1">
<addr-line>Université Claude Bernard – Lyon 1, France</addr-line>
</aff>
<author-notes>
<corresp id="cor1">* E-mail:
<email>chrysap@img.cas.cz</email>
</corresp>
<fn fn-type="conflict">
<p>
<bold>Competing Interests: </bold>
The authors have declared that no competing interests exist.</p>
</fn>
<fn fn-type="con">
<p>Conceived and designed the experiments: CNP ED ZGS. Analyzed the data: CNP. Wrote the paper: CNP ED ZGS.</p>
</fn>
</author-notes>
<pub-date pub-type="collection">
<year>2013</year>
</pub-date>
<pub-date pub-type="epub">
<day>16</day>
<month>9</month>
<year>2013</year>
</pub-date>
<volume>8</volume>
<issue>9</issue>
<elocation-id>e73217</elocation-id>
<history>
<date date-type="received">
<day>18</day>
<month>1</month>
<year>2013</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>7</month>
<year>2013</year>
</date>
</history>
<permissions>
<copyright-year>2013</copyright-year>
<copyright-holder>Pantzartzi et al</copyright-holder>
<license>
<license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<abstract>
<p>Hsp90s, members of the Heat Shock Protein class, protect the structure and function of proteins and play a significant task in cellular homeostasis and signal transduction. In order to determine the number of
<italic>hsp90</italic>
gene copies and encoded proteins in fungal and animal lineages and through that key duplication events that this family has undergone, we collected and evaluated Hsp90 protein sequences and corresponding Expressed Sequence Tags and analyzed available genomes from various taxa. We provide evidence for duplication events affecting either single species or wider taxonomic groups. With regard to Fungi, duplicated genes have been detected in several lineages. In invertebrates, we demonstrate key duplication events in certain clades of Arthropoda and Mollusca, and a possible gene loss event in a hymenopteran family. Finally, we infer that the duplication event responsible for the two (a and b) isoforms in vertebrates occurred probably shortly after the split of Hyperoartia and Gnathostomata.</p>
</abstract>
<funding-group>
<funding-statement>This publication was supported by intramural funds of the Aristotle University of Thessaloniki (Greece) to ZGS and ED and by the Academy of Sciences of the Czech Republic (RVO 68378050) and the project “BIOCEV – Biotechnology and Biomedicine Centre of the Academy of Sciences and Charles University” (CZ.1.05/1.1.00/02.0109), from the European Regional Development Fund to CNP. The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.</funding-statement>
</funding-group>
<counts>
<page-count count="11"></page-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations>
<list>
<country>
<li>Grèce</li>
<li>République tchèque</li>
</country>
<region>
<li>Bohême centrale</li>
</region>
<settlement>
<li>Prague</li>
</settlement>
</list>
<tree>
<country name="Grèce">
<noRegion>
<name sortKey="Pantzartzi, Chrysoula N" sort="Pantzartzi, Chrysoula N" uniqKey="Pantzartzi C" first="Chrysoula N." last="Pantzartzi">Chrysoula N. Pantzartzi</name>
</noRegion>
<name sortKey="Drosopoulou, Elena" sort="Drosopoulou, Elena" uniqKey="Drosopoulou E" first="Elena" last="Drosopoulou">Elena Drosopoulou</name>
<name sortKey="Scouras, Zacharias G" sort="Scouras, Zacharias G" uniqKey="Scouras Z" first="Zacharias G." last="Scouras">Zacharias G. Scouras</name>
</country>
<country name="République tchèque">
<region name="Bohême centrale">
<name sortKey="Pantzartzi, Chrysoula N" sort="Pantzartzi, Chrysoula N" uniqKey="Pantzartzi C" first="Chrysoula N." last="Pantzartzi">Chrysoula N. Pantzartzi</name>
</region>
</country>
</tree>
</affiliations>
</record>

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