A data management and publication workflow for a large-scale, heterogeneous sensor network
Identifieur interne : 000634 ( Ncbi/Merge ); précédent : 000633; suivant : 000635A data management and publication workflow for a large-scale, heterogeneous sensor network
Auteurs : Amber Spackman Jones [États-Unis] ; Jeffery S. Horsburgh [États-Unis] ; Stephanie L. Reeder [États-Unis] ; Maurier Ramírez [États-Unis] ; Juan Caraballo [États-Unis]Source :
- Environmental Monitoring and Assessment [ 0167-6369 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- analysis : Water Pollution.
- instrumentation : Environmental Monitoring.
- statistics & numerical data : Water Pollution.
- Information Storage and Retrieval, Publications, Software, Workflow.
Abstract
It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.
Url:
DOI: 10.1007/s10661-015-4594-3
PubMed: 25968554
PubMed Central: 4429147
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PMC:4429147Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.</p>
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<double pmid="25968554"><pmc><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A data management and publication workflow for a large-scale, heterogeneous sensor network</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
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<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S." last="Horsburgh">Jeffery S. Horsburgh</name>
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<placeName><region type="state">Utah</region>
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<wicri:cityArea>Department of Civil and Environmental Engineering and Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
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<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L." last="Reeder">Stephanie L. Reeder</name>
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<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
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</author>
<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
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<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
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<idno type="pmid">25968554</idno>
<idno type="pmc">4429147</idno>
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<idno type="RBID">PMC:4429147</idno>
<idno type="doi">10.1007/s10661-015-4594-3</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A data management and publication workflow for a large-scale, heterogeneous sensor network</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
<affiliation wicri:level="2"><nlm:aff id="Aff1">Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT 84322-8200 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S." last="Horsburgh">Jeffery S. Horsburgh</name>
<affiliation wicri:level="2"><nlm:aff id="Aff2">Department of Civil and Environmental Engineering and Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT 84322-8200 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Department of Civil and Environmental Engineering and Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L." last="Reeder">Stephanie L. Reeder</name>
<affiliation wicri:level="2"><nlm:aff id="Aff1">Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT 84322-8200 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
<affiliation wicri:level="2"><nlm:aff id="Aff1">Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT 84322-8200 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
<affiliation wicri:level="2"><nlm:aff id="Aff1">Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT 84322-8200 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Environmental Monitoring and Assessment</title>
<idno type="ISSN">0167-6369</idno>
<idno type="eISSN">1573-2959</idno>
<imprint><date when="2015">2015</date>
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<front><div type="abstract" xml:lang="en"><p>It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.</p>
</div>
</front>
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<pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A data management and publication workflow for a large-scale, heterogeneous sensor network.</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
<affiliation wicri:level="1"><nlm:affiliation>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA, amber.jones@usu.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA</wicri:regionArea>
<wicri:noRegion>USA</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S" last="Horsburgh">Jeffery S. Horsburgh</name>
</author>
<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L" last="Reeder">Stephanie L. Reeder</name>
</author>
<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
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<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
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<date when="2015">2015</date>
<idno type="doi">10.1007/s10661-015-4594-3</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">A data management and publication workflow for a large-scale, heterogeneous sensor network.</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
<affiliation wicri:level="1"><nlm:affiliation>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA, amber.jones@usu.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA</wicri:regionArea>
<wicri:noRegion>USA</wicri:noRegion>
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<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S" last="Horsburgh">Jeffery S. Horsburgh</name>
</author>
<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L" last="Reeder">Stephanie L. Reeder</name>
</author>
<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
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<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
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<series><title level="j">Environmental monitoring and assessment</title>
<idno type="eISSN">1573-2959</idno>
<imprint><date when="2015" type="published">2015</date>
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<term>Information Storage and Retrieval</term>
<term>Publications</term>
<term>Software</term>
<term>Water Pollution (analysis)</term>
<term>Water Pollution (statistics & numerical data)</term>
<term>Workflow</term>
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<keywords scheme="MESH" qualifier="analysis" xml:lang="en"><term>Water Pollution</term>
</keywords>
<keywords scheme="MESH" qualifier="instrumentation" xml:lang="en"><term>Environmental Monitoring</term>
</keywords>
<keywords scheme="MESH" qualifier="statistics & numerical data" xml:lang="en"><term>Water Pollution</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Information Storage and Retrieval</term>
<term>Publications</term>
<term>Software</term>
<term>Workflow</term>
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<front><div type="abstract" xml:lang="en">It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.</div>
</front>
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