MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
Identifieur interne : 000506 ( Ncbi/Curation ); précédent : 000505; suivant : 000507MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
Auteurs : Chengwei Luo [États-Unis] ; Luis M. Rodriguez-R [États-Unis] ; Konstantinos T. Konstantinidis [États-Unis]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2014.
Abstract
Determining the taxonomic affiliation of sequences assembled from metagenomes remains a major bottleneck that affects research across the fields of environmental, clinical and evolutionary microbiology. Here, we introduce MyTaxa, a homology-based bioinformatics framework to classify metagenomic and genomic sequences with unprecedented accuracy. The distinguishing aspect of MyTaxa is that it employs all genes present in an unknown sequence as classifiers, weighting each gene based on its (predetermined) classifying power at a given taxonomic level and frequency of horizontal gene transfer. MyTaxa also implements a novel classification scheme based on the genome-aggregate average amino acid identity concept to determine the degree of novelty of sequences representing uncharacterized taxa, i.e. whether they represent novel species, genera or phyla. Application of MyTaxa on
Url:
DOI: 10.1093/nar/gku169
PubMed: 24589583
PubMed Central: 4005636
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Rodriguez-R</name><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="gku169-AFF1">Centre for Bioinformatics and Computational Genomics, and School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Centre for Bioinformatics and Computational Genomics, and School of Biology, Georgia Institute of Technology, Atlanta, GA 30332</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gku169-AFF1">School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Konstantinidis, Konstantinos T" sort="Konstantinidis, Konstantinos T" uniqKey="Konstantinidis K" first="Konstantinos T." last="Konstantinidis">Konstantinos T. Konstantinidis</name><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="gku169-AFF1">Centre for Bioinformatics and Computational Genomics, and School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Centre for Bioinformatics and Computational Genomics, and School of Biology, Georgia Institute of Technology, Atlanta, GA 30332</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gku169-AFF1">School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Determining the taxonomic affiliation of sequences assembled from metagenomes remains a major bottleneck that affects research across the fields of environmental, clinical and evolutionary microbiology. Here, we introduce MyTaxa, a homology-based bioinformatics framework to classify metagenomic and genomic sequences with unprecedented accuracy. The distinguishing aspect of MyTaxa is that it employs all genes present in an unknown sequence as classifiers, weighting each gene based on its (predetermined) classifying power at a given taxonomic level and frequency of horizontal gene transfer. MyTaxa also implements a novel classification scheme based on the genome-aggregate average amino acid identity concept to determine the degree of novelty of sequences representing uncharacterized taxa, i.e. whether they represent novel species, genera or phyla. Application of MyTaxa on <italic>in silico</italic> generated (mock) and real metagenomes of varied read length (100–2000 bp) revealed that it correctly classified at least 5% more sequences than any other tool. The analysis also showed that ∼10% of the assembled sequences from human gut metagenomes represent novel species with no sequenced representatives, several of which were highly abundant <italic>in situ</italic> such as members of the <italic>Prevotella</italic> genus. Thus, MyTaxa can find several important applications in microbial identification and diversity studies.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Wrighton, Kc" uniqKey="Wrighton K">KC Wrighton</name></author><author><name sortKey="Thomas, Bc" uniqKey="Thomas B">BC Thomas</name></author><author><name sortKey="Sharon, I" uniqKey="Sharon I">I Sharon</name></author><author><name sortKey="Miller, Cs" uniqKey="Miller C">CS Miller</name></author><author><name sortKey="Castelle, Cj" uniqKey="Castelle C">CJ Castelle</name></author><author><name sortKey="Verberkmoes, Nc" uniqKey="Verberkmoes N">NC VerBerkmoes</name></author><author><name sortKey="Wilkins, Mj" uniqKey="Wilkins M">MJ Wilkins</name></author><author><name sortKey="Hettich, Rl" uniqKey="Hettich R">RL Hettich</name></author><author><name sortKey="Lipton, Ms" uniqKey="Lipton M">MS Lipton</name></author><author><name sortKey="Williams, Kh" uniqKey="Williams K">KH Williams</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arumugam, M" uniqKey="Arumugam M">M Arumugam</name></author><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Pelletier, E" uniqKey="Pelletier E">E Pelletier</name></author><author><name sortKey="Le Paslier, D" uniqKey="Le Paslier D">D Le Paslier</name></author><author><name sortKey="Yamada, T" uniqKey="Yamada T">T Yamada</name></author><author><name sortKey="Mende, Dr" uniqKey="Mende D">DR Mende</name></author><author><name sortKey="Fernandes, Gr" uniqKey="Fernandes G">GR Fernandes</name></author><author><name sortKey="Tap, J" uniqKey="Tap J">J Tap</name></author><author><name sortKey="Bruls, T" uniqKey="Bruls T">T Bruls</name></author><author><name sortKey="Batto, Jm" uniqKey="Batto J">JM Batto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Iverson, V" uniqKey="Iverson V">V Iverson</name></author><author><name sortKey="Morris, Rm" uniqKey="Morris R">RM Morris</name></author><author><name sortKey="Frazar, Cd" uniqKey="Frazar C">CD Frazar</name></author><author><name sortKey="Berthiaume, Ct" uniqKey="Berthiaume C">CT Berthiaume</name></author><author><name sortKey="Morales, Rl" uniqKey="Morales R">RL Morales</name></author><author><name sortKey="Armbrust, Ev" uniqKey="Armbrust E">EV Armbrust</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Glass, Em" uniqKey="Glass E">EM Glass</name></author><author><name sortKey="Wilkening, J" uniqKey="Wilkening J">J Wilkening</name></author><author><name sortKey="Wilke, A" uniqKey="Wilke A">A Wilke</name></author><author><name sortKey="Antonopoulos, D" uniqKey="Antonopoulos D">D Antonopoulos</name></author><author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, S" uniqKey="Sun S">S Sun</name></author><author><name sortKey="Chen, J" uniqKey="Chen J">J Chen</name></author><author><name sortKey="Li, W" uniqKey="Li W">W Li</name></author><author><name sortKey="Altintas, I" uniqKey="Altintas I">I Altintas</name></author><author><name sortKey="Lin, A" uniqKey="Lin A">A Lin</name></author><author><name sortKey="Peltier, S" uniqKey="Peltier S">S Peltier</name></author><author><name sortKey="Stocks, K" uniqKey="Stocks K">K Stocks</name></author><author><name sortKey="Allen, Ee" uniqKey="Allen E">EE Allen</name></author><author><name sortKey="Ellisman, M" uniqKey="Ellisman M">M Ellisman</name></author><author><name sortKey="Grethe, J" uniqKey="Grethe J">J Grethe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amann, Ri" uniqKey="Amann R">RI Amann</name></author><author><name sortKey="Ludwig, W" uniqKey="Ludwig W">W Ludwig</name></author><author><name sortKey="Schleifer, Kh" uniqKey="Schleifer K">KH Schleifer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Desantis, Tz" uniqKey="Desantis T">TZ DeSantis</name></author><author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name></author><author><name sortKey="Larsen, N" uniqKey="Larsen N">N Larsen</name></author><author><name sortKey="Rojas, M" uniqKey="Rojas M">M Rojas</name></author><author><name sortKey="Brodie, El" uniqKey="Brodie E">EL Brodie</name></author><author><name sortKey="Keller, K" uniqKey="Keller K">K Keller</name></author><author><name sortKey="Huber, T" uniqKey="Huber T">T Huber</name></author><author><name sortKey="Dalevi, D" uniqKey="Dalevi D">D Dalevi</name></author><author><name sortKey="Hu, P" uniqKey="Hu P">P Hu</name></author><author><name sortKey="Andersen, Gl" uniqKey="Andersen G">GL Andersen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cole, Jr" uniqKey="Cole J">JR Cole</name></author><author><name sortKey="Wang, Q" uniqKey="Wang Q">Q Wang</name></author><author><name sortKey="Cardenas, E" uniqKey="Cardenas E">E Cardenas</name></author><author><name sortKey="Fish, J" uniqKey="Fish J">J Fish</name></author><author><name sortKey="Chai, B" uniqKey="Chai B">B Chai</name></author><author><name sortKey="Farris, Rj" uniqKey="Farris R">RJ Farris</name></author><author><name sortKey="Kulam Syed Mohideen, As" uniqKey="Kulam Syed Mohideen A">AS Kulam-Syed-Mohideen</name></author><author><name sortKey="Mcgarrell, Dm" uniqKey="Mcgarrell D">DM McGarrell</name></author><author><name sortKey="Marsh, T" uniqKey="Marsh T">T Marsh</name></author><author><name sortKey="Garrity, Gm" uniqKey="Garrity G">GM Garrity</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woyke, T" uniqKey="Woyke T">T Woyke</name></author><author><name sortKey="Xie, G" uniqKey="Xie G">G Xie</name></author><author><name sortKey="Copeland, A" uniqKey="Copeland A">A Copeland</name></author><author><name sortKey="Gonzalez, Jm" uniqKey="Gonzalez J">JM Gonzalez</name></author><author><name sortKey="Han, C" uniqKey="Han C">C Han</name></author><author><name sortKey="Kiss, H" uniqKey="Kiss H">H Kiss</name></author><author><name sortKey="Saw, Jh" uniqKey="Saw J">JH Saw</name></author><author><name sortKey="Senin, P" uniqKey="Senin P">P Senin</name></author><author><name sortKey="Yang, C" uniqKey="Yang C">C Yang</name></author><author><name sortKey="Chatterji, S" uniqKey="Chatterji S">S Chatterji</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rosen, Gl" uniqKey="Rosen G">GL Rosen</name></author><author><name sortKey="Reichenberger, Er" uniqKey="Reichenberger E">ER Reichenberger</name></author><author><name sortKey="Rosenfeld, Am" uniqKey="Rosenfeld A">AM Rosenfeld</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Patil, Kr" uniqKey="Patil K">KR Patil</name></author><author><name sortKey="Haider, P" uniqKey="Haider P">P Haider</name></author><author><name sortKey="Pope, Pb" uniqKey="Pope P">PB Pope</name></author><author><name sortKey="Turnbaugh, Pj" uniqKey="Turnbaugh P">PJ Turnbaugh</name></author><author><name sortKey="Morrison, M" uniqKey="Morrison M">M Morrison</name></author><author><name sortKey="Scheffer, T" uniqKey="Scheffer T">T Scheffer</name></author><author><name sortKey="Mchardy, Ac" uniqKey="Mchardy A">AC McHardy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huson, Dh" uniqKey="Huson D">DH Huson</name></author><author><name sortKey="Mitra, S" uniqKey="Mitra S">S Mitra</name></author><author><name sortKey="Ruscheweyh, Hj" uniqKey="Ruscheweyh H">HJ Ruscheweyh</name></author><author><name sortKey="Weber, N" uniqKey="Weber N">N Weber</name></author><author><name sortKey="Schuster, Sc" uniqKey="Schuster S">SC Schuster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Monzoorul Haque, M" uniqKey="Monzoorul Haque M">M Monzoorul Haque</name></author><author><name sortKey="Ghosh, Ts" uniqKey="Ghosh T">TS Ghosh</name></author><author><name sortKey="Komanduri, D" uniqKey="Komanduri D">D Komanduri</name></author><author><name sortKey="Mande, Ss" uniqKey="Mande S">SS Mande</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krause, L" uniqKey="Krause L">L Krause</name></author><author><name sortKey="Diaz, Nn" uniqKey="Diaz N">NN Diaz</name></author><author><name sortKey="Goesmann, A" uniqKey="Goesmann A">A Goesmann</name></author><author><name sortKey="Kelley, S" uniqKey="Kelley S">S Kelley</name></author><author><name sortKey="Nattkemper, Tw" uniqKey="Nattkemper T">TW Nattkemper</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Edwards, Ra" uniqKey="Edwards R">RA Edwards</name></author><author><name sortKey="Stoye, J" uniqKey="Stoye J">J Stoye</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, Sf" uniqKey="Altschul S">SF Altschul</name></author><author><name sortKey="Madden, Tl" uniqKey="Madden T">TL Madden</name></author><author><name sortKey="Schaffer, Aa" uniqKey="Schaffer A">AA Schaffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z Zhang</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W Miller</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sonnhammer, El" uniqKey="Sonnhammer E">EL Sonnhammer</name></author><author><name sortKey="Eddy, Sr" uniqKey="Eddy S">SR Eddy</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author><author><name sortKey="Bateman, A" uniqKey="Bateman A">A Bateman</name></author><author><name sortKey="Durbin, R" uniqKey="Durbin R">R Durbin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brady, A" uniqKey="Brady A">A Brady</name></author><author><name sortKey="Salzberg, L" uniqKey="Salzberg L">L Salzberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, W" uniqKey="Zhu W">W Zhu</name></author><author><name sortKey="Lomsadze, A" uniqKey="Lomsadze A">A Lomsadze</name></author><author><name sortKey="Borodovsky, M" uniqKey="Borodovsky M">M Borodovsky</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hyatt, D" uniqKey="Hyatt D">D Hyatt</name></author><author><name sortKey="Locascio, Pf" uniqKey="Locascio P">PF LoCascio</name></author><author><name sortKey="Hauser, Lj" uniqKey="Hauser L">LJ Hauser</name></author><author><name sortKey="Uberbacher, Ec" uniqKey="Uberbacher E">EC Uberbacher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rho, M" uniqKey="Rho M">M Rho</name></author><author><name sortKey="Tang, H" uniqKey="Tang H">H Tang</name></author><author><name sortKey="Ye, Y" uniqKey="Ye Y">Y Ye</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kent, Wj" uniqKey="Kent W">WJ Kent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ondov, Bd" uniqKey="Ondov B">BD Ondov</name></author><author><name sortKey="Bergman, Nh" uniqKey="Bergman N">NH Bergman</name></author><author><name sortKey="Phillippy, Am" uniqKey="Phillippy A">AM Phillippy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bowman, Aw" uniqKey="Bowman A">AW Bowman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Price, Mn" uniqKey="Price M">MN Price</name></author><author><name sortKey="Dehal, Ps" uniqKey="Dehal P">PS Dehal</name></author><author><name sortKey="Arkin, Ap" uniqKey="Arkin A">AP Arkin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schluter, A" uniqKey="Schluter A">A Schluter</name></author><author><name sortKey="Bekel, T" uniqKey="Bekel T">T Bekel</name></author><author><name sortKey="Diaz, Nn" uniqKey="Diaz N">NN Diaz</name></author><author><name sortKey="Dondrup, M" uniqKey="Dondrup M">M Dondrup</name></author><author><name sortKey="Eichenlaub, R" uniqKey="Eichenlaub R">R Eichenlaub</name></author><author><name sortKey="Gartemann, Kh" uniqKey="Gartemann K">KH Gartemann</name></author><author><name sortKey="Krahn, I" uniqKey="Krahn I">I Krahn</name></author><author><name sortKey="Krause, L" uniqKey="Krause L">L Krause</name></author><author><name sortKey="Kromeke, H" uniqKey="Kromeke H">H Kromeke</name></author><author><name sortKey="Kruse, O" uniqKey="Kruse O">O Kruse</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goris, J" uniqKey="Goris J">J Goris</name></author><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Klappenbach, Ja" uniqKey="Klappenbach J">JA Klappenbach</name></author><author><name sortKey="Coenye, T" uniqKey="Coenye T">T Coenye</name></author><author><name sortKey="Vandamme, P" uniqKey="Vandamme P">P Vandamme</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Luo, C" uniqKey="Luo C">C Luo</name></author><author><name sortKey="Tsementzi, D" uniqKey="Tsementzi D">D Tsementzi</name></author><author><name sortKey="Kyrpides, N" uniqKey="Kyrpides N">N Kyrpides</name></author><author><name sortKey="Read, T" uniqKey="Read T">T Read</name></author><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mande, Ss" uniqKey="Mande S">SS Mande</name></author><author><name sortKey="Mohammed, Mh" uniqKey="Mohammed M">MH Mohammed</name></author><author><name sortKey="Ghosh, Ts" uniqKey="Ghosh T">TS Ghosh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF DeLong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Linnaeus, C" uniqKey="Linnaeus C">C Linnaeus</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sunagawa, S" uniqKey="Sunagawa S">S Sunagawa</name></author><author><name sortKey="Mende, Dr" uniqKey="Mende D">DR Mende</name></author><author><name sortKey="Zeller, G" uniqKey="Zeller G">G Zeller</name></author><author><name sortKey="Izquierdo Carrasco, F" uniqKey="Izquierdo Carrasco F">F Izquierdo-Carrasco</name></author><author><name sortKey="Berger, Sa" uniqKey="Berger S">SA Berger</name></author><author><name sortKey="Kultima, Jr" uniqKey="Kultima J">JR Kultima</name></author><author><name sortKey="Coelho, Lp" uniqKey="Coelho L">LP Coelho</name></author><author><name sortKey="Arumugam, M" uniqKey="Arumugam M">M Arumugam</name></author><author><name sortKey="Tap, J" uniqKey="Tap J">J Tap</name></author><author><name sortKey="Nielsen, Hb" uniqKey="Nielsen H">HB Nielsen</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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