Riboswitches in eubacteria sense the second messenger c-di-AMP
Identifieur interne : 000464 ( Ncbi/Curation ); précédent : 000463; suivant : 000465Riboswitches in eubacteria sense the second messenger c-di-AMP
Auteurs : James W. Nelson [États-Unis] ; Narasimhan Sudarsan [États-Unis] ; Kazuhiro Furukawa [États-Unis] ; Zasha Weinberg [États-Unis] ; Joy X. Wang [États-Unis] ; Ronald R. Breaker [États-Unis]Source :
- Nature chemical biology [ 1552-4450 ] ; 2013.
Abstract
Cyclic di-adenosine monophosphate (c-di-AMP) is a recently discovered bacterial second messenger implicated in the control of cell wall metabolism, osmotic stress responses, and sporulation. However, the mechanisms by which c-di-AMP triggers these physiological responses have remained largely unknown. Intriguingly, a candidate riboswitch class called
Url:
DOI: 10.1038/nchembio.1363
PubMed: 24141192
PubMed Central: 3830699
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Nelson</name><affiliation wicri:level="2"><nlm:aff id="A1">Department of Chemistry, Yale University, Box 208107, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Chemistry, Yale University, Box 208107, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Sudarsan, Narasimhan" sort="Sudarsan, Narasimhan" uniqKey="Sudarsan N" first="Narasimhan" last="Sudarsan">Narasimhan Sudarsan</name><affiliation wicri:level="2"><nlm:aff id="A2">Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Furukawa, Kazuhiro" sort="Furukawa, Kazuhiro" uniqKey="Furukawa K" first="Kazuhiro" last="Furukawa">Kazuhiro Furukawa</name><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Weinberg, Zasha" sort="Weinberg, Zasha" uniqKey="Weinberg Z" first="Zasha" last="Weinberg">Zasha Weinberg</name><affiliation wicri:level="2"><nlm:aff id="A2">Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Wang, Joy X" sort="Wang, Joy X" uniqKey="Wang J" first="Joy X." last="Wang">Joy X. Wang</name><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Breaker, Ronald R" sort="Breaker, Ronald R" uniqKey="Breaker R" first="Ronald R." last="Breaker">Ronald R. 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Nelson</name><affiliation wicri:level="2"><nlm:aff id="A1">Department of Chemistry, Yale University, Box 208107, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Chemistry, Yale University, Box 208107, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Sudarsan, Narasimhan" sort="Sudarsan, Narasimhan" uniqKey="Sudarsan N" first="Narasimhan" last="Sudarsan">Narasimhan Sudarsan</name><affiliation wicri:level="2"><nlm:aff id="A2">Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Furukawa, Kazuhiro" sort="Furukawa, Kazuhiro" uniqKey="Furukawa K" first="Kazuhiro" last="Furukawa">Kazuhiro Furukawa</name><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Weinberg, Zasha" sort="Weinberg, Zasha" uniqKey="Weinberg Z" first="Zasha" last="Weinberg">Zasha Weinberg</name><affiliation wicri:level="2"><nlm:aff id="A2">Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Wang, Joy X" sort="Wang, Joy X" uniqKey="Wang J" first="Joy X." last="Wang">Joy X. Wang</name><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author><author><name sortKey="Breaker, Ronald R" sort="Breaker, Ronald R" uniqKey="Breaker R" first="Ronald R." last="Breaker">Ronald R. Breaker</name><affiliation wicri:level="2"><nlm:aff id="A2">Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A3">Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A4">Department of Molecular Biophysics and Biochemistry, Yale University, Box 208103, New Haven, CT 06520, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular Biophysics and Biochemistry, Yale University, Box 208103, New Haven, CT 06520</wicri:regionArea><placeName><region type="state">Connecticut</region></placeName></affiliation></author></analytic><series><title level="j">Nature chemical biology</title><idno type="ISSN">1552-4450</idno><idno type="eISSN">1552-4469</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P3">Cyclic di-adenosine monophosphate (c-di-AMP) is a recently discovered bacterial second messenger implicated in the control of cell wall metabolism, osmotic stress responses, and sporulation. However, the mechanisms by which c-di-AMP triggers these physiological responses have remained largely unknown. Intriguingly, a candidate riboswitch class called <italic>ydaO</italic> associates with numerous genes involved in these same processes. Although a representative <italic>ydaO</italic> motif RNA recently was reported to weakly bind ATP, we report that numerous members of this noncoding RNA class selectively respond to c-di-AMP with sub-nanomolar affinity. Our findings resolve the mystery regarding the primary ligand for this extremely common riboswitch class and expose a major portion of the super-regulon of genes that are controlled by the widespread bacterial second messenger c-di-AMP.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Romling, U" uniqKey="Romling U">U Römling</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pesavento, C" uniqKey="Pesavento C">C Pesavento</name></author><author><name sortKey="Hengge, R" uniqKey="Hengge R">R Hengge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sondermann, H" uniqKey="Sondermann H">H Sondermann</name></author><author><name sortKey="Shikuma, Nj" uniqKey="Shikuma N">NJ Shikuma</name></author><author><name sortKey="Yildiz, Fh" uniqKey="Yildiz F">FH Yildiz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krasteva, Pv" 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sortKey="Sun, S" uniqKey="Sun S">S Sun</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Benson, Da" uniqKey="Benson D">DA Benson</name></author><author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I Karsch-Mizrachi</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author><author><name sortKey="Ostell, J" uniqKey="Ostell J">J Ostell</name></author><author><name sortKey="Wheeler, Dl" uniqKey="Wheeler D">DL Wheeler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roth, A" uniqKey="Roth A">A Roth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gerstein, M" uniqKey="Gerstein M">M Gerstein</name></author><author><name sortKey="Sonnhammer, Ell" uniqKey="Sonnhammer E">ELL Sonnhammer</name></author><author><name sortKey="Chothia, C" uniqKey="Chothia C">C 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