Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populus paralogues
Identifieur interne : 000230 ( Ncbi/Curation ); précédent : 000229; suivant : 000231Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populus paralogues
Auteurs : Lindsey K. Tuominen [États-Unis] ; Virgil E. Johnson [États-Unis] ; Chung-Jui Tsai [États-Unis]Source :
- BMC Genomics [ 1471-2164 ] ; 2011.
Abstract
BAHD acyltransferases are involved in the synthesis and elaboration of a wide variety of secondary metabolites. Previous research has shown that characterized proteins from this family fall broadly into five major clades and contain two conserved protein motifs. Here, we aimed to expand the understanding of BAHD acyltransferase diversity in plants through genome-wide analysis across five angiosperm taxa. We focus particularly on
Phylogenetic analysis of putative BAHD acyltransferase sequences from
Differential, taxon-specific BAHD family expansion via gene duplication could be an evolutionary process contributing to metabolic diversity across plant taxa. Gene expression divergence among some
Url:
DOI: 10.1186/1471-2164-12-236
PubMed: 21569431
PubMed Central: 3123328
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PMC:3123328Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among <italic>Populus </italic>
paralogues</title>
<author><name sortKey="Tuominen, Lindsey K" sort="Tuominen, Lindsey K" uniqKey="Tuominen L" first="Lindsey K" last="Tuominen">Lindsey K. Tuominen</name>
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<author><name sortKey="Johnson, Virgil E" sort="Johnson, Virgil E" uniqKey="Johnson V" first="Virgil E" last="Johnson">Virgil E. Johnson</name>
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<author><name sortKey="Tsai, Chung Jui" sort="Tsai, Chung Jui" uniqKey="Tsai C" first="Chung-Jui" last="Tsai">Chung-Jui Tsai</name>
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<series><title level="j">BMC Genomics</title>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>BAHD acyltransferases are involved in the synthesis and elaboration of a wide variety of secondary metabolites. Previous research has shown that characterized proteins from this family fall broadly into five major clades and contain two conserved protein motifs. Here, we aimed to expand the understanding of BAHD acyltransferase diversity in plants through genome-wide analysis across five angiosperm taxa. We focus particularly on <italic>Populus</italic>
, a woody perennial known to produce an abundance of secondary metabolites.</p>
</sec>
<sec><title>Results</title>
<p>Phylogenetic analysis of putative BAHD acyltransferase sequences from <italic>Arabidopsis</italic>
, <italic>Medicago</italic>
, <italic>Oryza</italic>
, <italic>Populus</italic>
, and <italic>Vitis</italic>
, along with previously characterized proteins, supported a refined grouping of eight major clades for this family. Taxon-specific clustering of many BAHD family members appears pervasive in angiosperms. We identified two new multi-clade motifs and numerous clade-specific motifs, several of which have been implicated in BAHD function by previous structural and mutagenesis research. Gene duplication and expression data for <italic>Populus</italic>
-dominated subclades revealed that several paralogous BAHD members in this genus might have already undergone functional divergence.</p>
</sec>
<sec><title>Conclusions</title>
<p>Differential, taxon-specific BAHD family expansion via gene duplication could be an evolutionary process contributing to metabolic diversity across plant taxa. Gene expression divergence among some <italic>Populus </italic>
paralogues highlights possible distinctions between their biochemical and physiological functions. The newly discovered motifs, especially the clade-specific motifs, should facilitate future functional study of substrate and donor specificity among BAHD enzymes.</p>
</sec>
</div>
</front>
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