DroSpeGe: rapid access database for new Drosophila species genomes
Identifieur interne : 000018 ( Ncbi/Curation ); précédent : 000017; suivant : 000019DroSpeGe: rapid access database for new Drosophila species genomes
Auteurs : Donald G. GilbertSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2007.
English descriptors
- KwdEn :
- MESH :
- classification : Drosophila.
- genetics : Drosophila.
- Animals, Chromosome Mapping, Chromosomes, Databases, Genetic, Genetic Variation, Genome, Insect, Genomics, Internet, Software, User-Computer Interface.
Abstract
The
Url:
DOI: 10.1093/nar/gkl997
PubMed: 17202166
PubMed Central: 1899099
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PMC:1899099Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">DroSpeGe: rapid access database for new <italic>Drosophila</italic> species genomes</title><author><name sortKey="Gilbert, Donald G" sort="Gilbert, Donald G" uniqKey="Gilbert D" first="Donald G." last="Gilbert">Donald G. Gilbert</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">17202166</idno><idno type="pmc">1899099</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899099</idno><idno type="RBID">PMC:1899099</idno><idno type="doi">10.1093/nar/gkl997</idno><date when="2007">2007</date><idno type="wicri:Area/Pmc/Corpus">000571</idno><idno type="wicri:Area/Pmc/Curation">000571</idno><idno type="wicri:Area/Pmc/Checkpoint">000697</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000084</idno><idno type="wicri:Area/PubMed/Curation">000084</idno><idno type="wicri:Area/PubMed/Checkpoint">000084</idno><idno type="wicri:Area/Ncbi/Merge">000018</idno><idno type="wicri:Area/Ncbi/Curation">000018</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">DroSpeGe: rapid access database for new <italic>Drosophila</italic> species genomes</title><author><name sortKey="Gilbert, Donald G" sort="Gilbert, Donald G" uniqKey="Gilbert D" first="Donald G." last="Gilbert">Donald G. Gilbert</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chromosome Mapping</term><term>Chromosomes</term><term>Databases, Genetic</term><term>Drosophila (classification)</term><term>Drosophila (genetics)</term><term>Genetic Variation</term><term>Genome, Insect</term><term>Genomics</term><term>Internet</term><term>Software</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Drosophila</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Drosophila</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Chromosome Mapping</term><term>Chromosomes</term><term>Databases, Genetic</term><term>Genetic Variation</term><term>Genome, Insect</term><term>Genomics</term><term>Internet</term><term>Software</term><term>User-Computer Interface</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The <italic>Drosophila</italic> species comparative genome database DroSpeGe (<ext-link ext-link-type="uri" xlink:href="http://insects.eugenes.org/DroSpeGe/"></ext-link>) provides genome researchers with rapid, usable access to 12 new and old <italic>Drosophila</italic> genomes, since its inception in 2004. Scientists can use, with minimal computing expertise, the wealth of new genome information for developing new insights into insect evolution. New genome assemblies provided by several sequencing centers have been annotated with known model organism gene homologies and gene predictions to provided basic comparative data. TeraGrid supplies the shared cyberinfrastructure for the primary computations. This genome database includes homologies to <italic>Drosophila melanogaster</italic> and eight other eukaryote model genomes, and gene predictions from several groups. BLAST searches of the newest assemblies are integrated with genome maps. GBrowse maps provide detailed views of cross-species aligned genomes. BioMart provides for data mining of annotations and sequences. Common chromosome maps identify major synteny among species. Potential gain and loss of genes is suggested by Gene Ontology groupings for genes of the new species. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species and comparisons of several gene predictions for sensitivity and specificity in finding new and known genes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Benson, D" uniqKey="Benson D">D. Benson</name></author><author><name sortKey="Wheeler, D" uniqKey="Wheeler D">D. Wheeler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Siepel, A G" uniqKey="Siepel A">A.G. Siepel</name></author><author><name sortKey="Bejerano, J S" uniqKey="Bejerano J">J.S. Bejerano</name></author><author><name sortKey="Pedersen, A S" uniqKey="Pedersen A">A.S. Pedersen</name></author><author><name sortKey="Hinrichs, M" uniqKey="Hinrichs M">M. Hinrichs</name></author><author><name sortKey="Hou, K" uniqKey="Hou K">K. 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Ponting</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stein, L" uniqKey="Stein L">L. Stein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stajich, J E" uniqKey="Stajich J">J.E. Stajich</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Colbourne, J K" uniqKey="Colbourne J">J.K. Colbourne</name></author><author><name sortKey="Singan, V R" uniqKey="Singan V">V.R. Singan</name></author><author><name sortKey="Gilbert, D G" uniqKey="Gilbert D">D.G. Gilbert</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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