Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases
Identifieur interne : 000375 ( Ncbi/Checkpoint ); précédent : 000374; suivant : 000376Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases
Auteurs : David Bass [Royaume-Uni] ; Akinori Yabuki [Royaume-Uni] ; Sébastien Santini [France] ; Sarah Romac [France] ; Cédric Berney [Royaume-Uni]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
We sequenced the 18S ribosomal RNA gene of seven isolates of the enigmatic marine amoeboflagellate
Url:
DOI: 10.1371/journal.pone.0049090
PubMed: 23226495
PubMed Central: 3514243
Affiliations:
- France, Royaume-Uni
- Angleterre, Grand Londres, Oxfordshire
- Londres, Marseille, Oxford
- Université d'Oxford
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PMC:3514243Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>Reticulamoeba</italic>
Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases</title>
<author><name sortKey="Bass, David" sort="Bass, David" uniqKey="Bass D" first="David" last="Bass">David Bass</name>
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<author><name sortKey="Yabuki, Akinori" sort="Yabuki, Akinori" uniqKey="Yabuki A" first="Akinori" last="Yabuki">Akinori Yabuki</name>
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<author><name sortKey="Santini, Sebastien" sort="Santini, Sebastien" uniqKey="Santini S" first="Sébastien" last="Santini">Sébastien Santini</name>
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<front><div type="abstract" xml:lang="en"><p>We sequenced the 18S ribosomal RNA gene of seven isolates of the enigmatic marine amoeboflagellate <italic>Reticulamoeba</italic>
Grell, which resolved into four genetically distinct <italic>Reticulamoeba</italic>
lineages, two of which correspond to <italic>R. gemmipara</italic>
Grell and <italic>R. minor</italic>
Grell, another with a relatively large cell body forming lacunae, and another that has similarities to both <italic>R. minor</italic>
and <italic>R. gemmipara</italic>
but with a greater propensity to form cell clusters. These lineages together form a long-branched clade that branches within the cercozoan class Granofilosea (phylum Cercozoa), showing phylogenetic affinities with the genus <italic>Mesofila</italic>
. The basic morphology of <italic>Reticulamoeba</italic>
is a roundish or ovoid cell with a more or less irregular outline. Long and branched reticulopodia radiate from the cell. The reticulopodia bear granules that are bidirectionally motile. There is also a biflagellate dispersal stage. <italic>Reticulamoeba</italic>
is frequently observed in coastal marine environmental samples. PCR primers specific to the <italic>Reticulamoeba</italic>
clade confirm that it is a frequent member of benthic marine microbial communities, and is also found in brackish water sediments and freshwater biofilm. However, so far it has not been found in large molecular datasets such as the nucleotide database in NCBI GenBank, metagenomic datasets in Camera, and the marine microbial eukaryote sampling and sequencing consortium BioMarKs, although closely related lineages can be found in some of these datasets using a highly targeted approach. Therefore, although such datasets are very powerful tools in microbial ecology, they may, for several methodological reasons, fail to detect ecologically and evolutionary key lineages.</p>
</div>
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