Utopia documents: linking scholarly literature with research data
Identifieur interne : 000159 ( Ncbi/Checkpoint ); précédent : 000158; suivant : 000160Utopia documents: linking scholarly literature with research data
Auteurs : T. K. Attwood ; D. B. Kell [Royaume-Uni] ; P. Mcdermott ; J. Marsh ; S. R. Pettifer ; D. ThorneSource :
- Bioinformatics [ 1367-4803 ] ; 2010.
Abstract
Url:
DOI: 10.1093/bioinformatics/btq383
PubMed: 20823323
PubMed Central: 2935404
Affiliations:
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PMC:2935404Le document en format XML
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<author><name sortKey="Attwood, T K" sort="Attwood, T K" uniqKey="Attwood T" first="T. K." last="Attwood">T. K. Attwood</name>
<affiliation><nlm:aff id="AFF1">School of Computer Science,</nlm:aff>
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<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
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<author><name sortKey="Kell, D B" sort="Kell, D B" uniqKey="Kell D" first="D. B." last="Kell">D. B. Kell</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
<wicri:noCountry code="subfield">Manchester M13 9PL</wicri:noCountry>
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<affiliation wicri:level="1"><nlm:aff id="AFF1">Manchester Interdisciplinary Biocentre, 131 Princess Street, Manchester M1 7DN, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
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<author><name sortKey="Mcdermott, P" sort="Mcdermott, P" uniqKey="Mcdermott P" first="P." last="Mcdermott">P. Mcdermott</name>
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<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
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<author><name sortKey="Marsh, J" sort="Marsh, J" uniqKey="Marsh J" first="J." last="Marsh">J. Marsh</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
<wicri:noCountry code="subfield">Manchester M13 9PL</wicri:noCountry>
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<author><name sortKey="Pettifer, S R" sort="Pettifer, S R" uniqKey="Pettifer S" first="S. R." last="Pettifer">S. R. Pettifer</name>
<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
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<author><name sortKey="Thorne, D" sort="Thorne, D" uniqKey="Thorne D" first="D." last="Thorne">D. Thorne</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
<wicri:noCountry code="subfield">Manchester M13 9PL</wicri:noCountry>
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<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935404</idno>
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<idno type="doi">10.1093/bioinformatics/btq383</idno>
<date when="2010">2010</date>
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<author><name sortKey="Attwood, T K" sort="Attwood, T K" uniqKey="Attwood T" first="T. K." last="Attwood">T. K. Attwood</name>
<affiliation><nlm:aff id="AFF1">School of Computer Science,</nlm:aff>
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<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
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<author><name sortKey="Kell, D B" sort="Kell, D B" uniqKey="Kell D" first="D. B." last="Kell">D. B. Kell</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
<wicri:noCountry code="subfield">Manchester M13 9PL</wicri:noCountry>
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<affiliation><nlm:aff id="AFF1">School of Computer Science,</nlm:aff>
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<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
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<author><name sortKey="Marsh, J" sort="Marsh, J" uniqKey="Marsh J" first="J." last="Marsh">J. Marsh</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
<wicri:noCountry code="subfield">Manchester M13 9PL</wicri:noCountry>
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<author><name sortKey="Pettifer, S R" sort="Pettifer, S R" uniqKey="Pettifer S" first="S. R." last="Pettifer">S. R. Pettifer</name>
<affiliation><nlm:aff id="AFF1">Faculty of Life Sciences,</nlm:aff>
</affiliation>
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<author><name sortKey="Thorne, D" sort="Thorne, D" uniqKey="Thorne D" first="D." last="Thorne">D. Thorne</name>
<affiliation><nlm:aff wicri:cut=" and" id="AFF1">School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL</nlm:aff>
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<series><title level="j">Bioinformatics</title>
<idno type="ISSN">1367-4803</idno>
<idno type="eISSN">1367-4811</idno>
<imprint><date when="2010">2010</date>
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<front><div type="abstract" xml:lang="en"><p><bold>Motivation:</bold>
In recent years, the gulf between the mass of accumulating-research data and the massive literature describing and analyzing those data has widened. The need for intelligent tools to bridge this gap, to rescue the knowledge being systematically isolated in literature and data silos, is now widely acknowledged.</p>
<p><bold>Results:</bold>
To this end, we have developed Utopia Documents, a novel PDF reader that semantically integrates visualization and data-analysis tools with published research articles. In a successful pilot with editors of the <italic>Biochemical Journal</italic>
(<italic>BJ</italic>
), the system has been used to transform static document features into objects that can be linked, annotated, visualized and analyzed interactively (<ext-link ext-link-type="uri" xlink:href="http://www.biochemj.org/bj/424/3/">http://www.biochemj.org/bj/424/3/</ext-link>
). Utopia Documents is now used routinely by <italic>BJ</italic>
editors to mark up article content prior to publication. Recent additions include integration of various text-mining and biodatabase plugins, demonstrating the system's ability to seamlessly integrate on-line content with PDF articles.</p>
<p><bold>Availability:</bold>
<ext-link ext-link-type="uri" xlink:href="http://getutopia.com">http://getutopia.com</ext-link>
</p>
<p><bold>Contact:</bold>
<email>teresa.k.attwood@manchester.ac.uk</email>
</p>
</div>
</front>
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