Toward an Integrated RNA Motif Database
Identifieur interne : 000F14 ( Main/Merge ); précédent : 000F13; suivant : 000F15Toward an Integrated RNA Motif Database
Auteurs : L. Wang [États-Unis] ; Dongrong Wen [États-Unis] ; A. Shapiro [États-Unis] ; G. Herbert [États-Unis] ; Jing Li [États-Unis] ; Kaushik Ghosh [États-Unis]Source :
- Lecture Notes in Computer Science [ 0302-9743 ] ; 2007.
Abstract
Abstract: In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/
Url:
DOI: 10.1007/978-3-540-73255-6_5
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Herbert</name></author><author><name sortKey="Li, Jing" sort="Li, Jing" uniqKey="Li J" first="Jing" last="Li">Jing Li</name></author><author><name sortKey="Ghosh, Kaushik" sort="Ghosh, Kaushik" uniqKey="Ghosh K" first="Kaushik" last="Ghosh">Kaushik Ghosh</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:29B3A657B2F7BD49BAFD1F0C3439259CA37B9E26</idno><date when="2007" year="2007">2007</date><idno type="doi">10.1007/978-3-540-73255-6_5</idno><idno type="url">https://api.istex.fr/document/29B3A657B2F7BD49BAFD1F0C3439259CA37B9E26/fulltext/pdf</idno><idno type="wicri:Area/Istex/Corpus">000218</idno><idno type="wicri:Area/Istex/Curation">000218</idno><idno type="wicri:Area/Istex/Checkpoint">000570</idno><idno type="wicri:doubleKey">0302-9743:2007:Wang L:toward:an:integrated</idno><idno type="wicri:Area/Main/Merge">000F14</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Toward an Integrated RNA Motif Database</title><author><name sortKey="Wang, L" sort="Wang, L" uniqKey="Wang L" first="L." last="Wang">L. Wang</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Bioinformatics Program and Department of Computer Science, New Jersey Institute of Technology, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Wen, Dongrong" sort="Wen, Dongrong" uniqKey="Wen D" first="Dongrong" last="Wen">Dongrong Wen</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Bioinformatics Program and Department of Computer Science, New Jersey Institute of Technology, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Shapiro, A" sort="Shapiro, A" uniqKey="Shapiro A" first="A." last="Shapiro">A. Shapiro</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>Center for Cancer Research Nanobiology Program, National Cancer Institute, Frederick</wicri:cityArea></affiliation></author><author><name sortKey="Herbert, G" sort="Herbert, G" uniqKey="Herbert G" first="G." last="Herbert">G. Herbert</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Department of Computer Science, Montclair State University, Montclair</wicri:cityArea></affiliation></author><author><name sortKey="Li, Jing" sort="Li, Jing" uniqKey="Li J" first="Jing" last="Li">Jing Li</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Applied Statistics Program and Department of Mathematical Sciences, New Jersey Institute of Technology, Newark</wicri:cityArea></affiliation></author><author><name sortKey="Ghosh, Kaushik" sort="Ghosh, Kaushik" uniqKey="Ghosh K" first="Kaushik" last="Ghosh">Kaushik Ghosh</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Applied Statistics Program and Department of Mathematical Sciences, New Jersey Institute of Technology, Newark</wicri:cityArea></affiliation></author></analytic><monogr></monogr><series><title level="s">Lecture Notes in Computer Science</title><imprint><date>2007</date></imprint><idno type="ISSN">0302-9743</idno><idno type="eISSN">1611-3349</idno><idno type="ISSN">0302-9743</idno></series><idno type="istex">29B3A657B2F7BD49BAFD1F0C3439259CA37B9E26</idno><idno type="DOI">10.1007/978-3-540-73255-6_5</idno><idno type="ChapterID">5</idno><idno type="ChapterID">Chap5</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0302-9743</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/</div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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