Open Source Software Projects of the caBIG™ In Vivo Imaging Workspace Software Special Interest Group
Identifieur interne : 000F04 ( Main/Merge ); précédent : 000F03; suivant : 000F05Open Source Software Projects of the caBIG™ In Vivo Imaging Workspace Software Special Interest Group
Auteurs : Fred W. Prior [États-Unis] ; Bradley J. Erickson [États-Unis] ; Lawrence Tarbox [États-Unis]Source :
- Journal of Digital Imaging [ 0897-1889 ] ; 2007.
Abstract
The Cancer Bioinformatics Grid (caBIG™) program was created by the National Cancer Institute to facilitate sharing of IT infrastructure, data, and applications among the National Cancer Institute-sponsored cancer research centers. The program was launched in February 2004 and now links more than 50 cancer centers. In April 2005, the In Vivo Imaging Workspace was added to promote the use of imaging in cancer clinical trials. At the inaugural meeting, four special interest groups (SIGs) were established. The Software SIG was charged with identifying projects that focus on open-source software for image visualization and analysis. To date, two projects have been defined by the Software SIG. The eXtensible Imaging Platform project has produced a rapid application development environment that researchers may use to create targeted workflows customized for specific research projects. The Algorithm Validation Tools project will provide a set of tools and data structures that will be used to capture measurement information and associated needed to allow a gold standard to be defined for the given database against which change analysis algorithms can be tested. Through these and future efforts, the caBIG™ In Vivo Imaging Workspace Software SIG endeavors to advance imaging informatics and provide new open-source software tools to advance cancer research.
Url:
DOI: 10.1007/s10278-007-9061-4
PubMed: 17846835
PubMed Central: 2039820
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PMC:2039820Le document en format XML
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Erickson</name><affiliation wicri:level="2"><nlm:aff id="Aff2">Department of Radiology, Mayo Clinic, Rochester, MN USA</nlm:aff><country>États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Radiology, Mayo Clinic, Rochester</wicri:cityArea></affiliation></author><author><name sortKey="Tarbox, Lawrence" sort="Tarbox, Lawrence" uniqKey="Tarbox L" first="Lawrence" last="Tarbox">Lawrence Tarbox</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO USA</nlm:aff><country>États-Unis</country><placeName><region type="state">Missouri (État)</region></placeName><wicri:cityArea>Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">17846835</idno><idno type="pmc">2039820</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2039820</idno><idno type="RBID">PMC:2039820</idno><idno type="doi">10.1007/s10278-007-9061-4</idno><date when="2007">2007</date><idno type="wicri:Area/Pmc/Corpus">000184</idno><idno type="wicri:Area/Pmc/Curation">000184</idno><idno type="wicri:Area/Pmc/Checkpoint">000694</idno><idno type="wicri:Area/Ncbi/Merge">000035</idno><idno type="wicri:Area/Ncbi/Curation">000035</idno><idno type="wicri:Area/Ncbi/Checkpoint">000035</idno><idno type="wicri:doubleKey">0897-1889:2007:Prior F:open:source:software</idno><idno type="wicri:Area/Main/Merge">000F04</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Open Source Software Projects of the caBIG™ In Vivo Imaging Workspace Software Special Interest Group</title><author><name sortKey="Prior, Fred W" sort="Prior, Fred W" uniqKey="Prior F" first="Fred W." last="Prior">Fred W. Prior</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO USA</nlm:aff><country>États-Unis</country><placeName><region type="state">Missouri (État)</region></placeName><wicri:cityArea>Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis</wicri:cityArea></affiliation></author><author><name sortKey="Erickson, Bradley J" sort="Erickson, Bradley J" uniqKey="Erickson B" first="Bradley J." last="Erickson">Bradley J. Erickson</name><affiliation wicri:level="2"><nlm:aff id="Aff2">Department of Radiology, Mayo Clinic, Rochester, MN USA</nlm:aff><country>États-Unis</country><placeName><region type="state">Minnesota</region></placeName><wicri:cityArea>Department of Radiology, Mayo Clinic, Rochester</wicri:cityArea></affiliation></author><author><name sortKey="Tarbox, Lawrence" sort="Tarbox, Lawrence" uniqKey="Tarbox L" first="Lawrence" last="Tarbox">Lawrence Tarbox</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO USA</nlm:aff><country>États-Unis</country><placeName><region type="state">Missouri (État)</region></placeName><wicri:cityArea>Electronic Radiology Laboratory, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis</wicri:cityArea></affiliation></author></analytic><series><title level="j">Journal of Digital Imaging</title><idno type="ISSN">0897-1889</idno><idno type="eISSN">1618-727X</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Cancer Bioinformatics Grid (caBIG™) program was created by the National Cancer Institute to facilitate sharing of IT infrastructure, data, and applications among the National Cancer Institute-sponsored cancer research centers. The program was launched in February 2004 and now links more than 50 cancer centers. In April 2005, the In Vivo Imaging Workspace was added to promote the use of imaging in cancer clinical trials. At the inaugural meeting, four special interest groups (SIGs) were established. The Software SIG was charged with identifying projects that focus on open-source software for image visualization and analysis. To date, two projects have been defined by the Software SIG. The eXtensible Imaging Platform project has produced a rapid application development environment that researchers may use to create targeted workflows customized for specific research projects. The Algorithm Validation Tools project will provide a set of tools and data structures that will be used to capture measurement information and associated needed to allow a gold standard to be defined for the given database against which change analysis algorithms can be tested. Through these and future efforts, the caBIG™ In Vivo Imaging Workspace Software SIG endeavors to advance imaging informatics and provide new open-source software tools to advance cancer research.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Buetow, K" uniqKey="Buetow K">K Buetow</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Leuf, B" uniqKey="Leuf B">B Leuf</name></author><author><name sortKey="Cunningham, W" uniqKey="Cunningham W">W Cunningham</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Saltz, J" uniqKey="Saltz J">J Saltz</name></author><author><name sortKey="Oster, S" uniqKey="Oster S">S Oster</name></author><author><name sortKey="Hastings, S" uniqKey="Hastings S">S Hastings</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wernecke, J" uniqKey="Wernecke J">J Wernecke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ibanex, L" uniqKey="Ibanex L">L Ibanex</name></author><author><name sortKey="Schroeder, W" uniqKey="Schroeder W">W Schroeder</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schroeder, W" uniqKey="Schroeder W">W Schroeder</name></author><author><name sortKey="Martin, K" uniqKey="Martin K">K Martin</name></author><author><name sortKey="Bill Lorensen, B" uniqKey="Bill Lorensen B">B Bill Lorensen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Therasse, P" uniqKey="Therasse P">P Therasse</name></author><author><name sortKey="Arbuck, Sg" uniqKey="Arbuck S">SG Arbuck</name></author><author><name sortKey="Eisenhauer, Ea" uniqKey="Eisenhauer E">EA Eisenhauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Patriarche, J" uniqKey="Patriarche J">J Patriarche</name></author><author><name sortKey="Erickson, B" uniqKey="Erickson B">B Erickson</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Dalgaard, P" uniqKey="Dalgaard P">P Dalgaard</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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