CyberinfraV1, Main, Merge, bibRecord, 000F02

THE CELL CENTERED DATABASE PROJECT: AN UPDATE ON BUILDING COMMUNITY RESOURCES FOR MANAGING AND SHARING 3D IMAGING DATA

Identifieur interne : 000F02 ( Main/Merge ); précédent : 000F01; suivant : 000F03

THE CELL CENTERED DATABASE PROJECT: AN UPDATE ON BUILDING COMMUNITY RESOURCES FOR MANAGING AND SHARING 3D IMAGING DATA

Auteurs : Maryann E. Martone [États-Unis] ; Joshua Tran [États-Unis] ; Willy W. Wong [États-Unis] ; Joy Sargis [États-Unis] ; Lisa Fong [États-Unis] ; Stephen Larson [États-Unis] ; Stephan P. Lamont [États-Unis] ; Amarnath Gupta ; Mark H. Ellisman [États-Unis]

Source :

Journal of structural biology [ 1047-8477 ] ; 2007.

RBID : PMC:2367257

Abstract

Databases have become integral parts of data management, dissemination and mining in biology. At the Second Annual Conference on Electron Tomography, held in Amsterdam in 2001, we proposed that electron tomography data should be shared in a manner analogous to structural data at the protein and sequence scales. At that time, we outlined our progress in creating a database to bring together cell level imaging data across scales, The Cell Centered Database (CCDB). The CCDB was formally launched in 2002 as an on-line repository of high-resolution 3D light and electron microscopic reconstructions of cells and subcellular structures. It contains 2D, 3D and 4D structural and protein distribution information from confocal, multiphoton and electron microscopy, including correlated light and electron microscopy. Many of the data sets are derived from electron tomography of cells and tissues. In the five years since its debut, we have moved the CCDB from a prototype to a stable resource and expanded the scope of the project to include data management and knowledge engineering. Here we provide an update on the CCDB and how it is used by the scientific community. We also describe our work in developing additional knowledge tools, e.g., ontologies, for annotation and query of electron microscopic data.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367257

DOI: 10.1016/j.jsb.2007.10.003
PubMed: 18054501
PubMed Central: 2367257

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Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">THE CELL CENTERED DATABASE PROJECT: AN UPDATE ON BUILDING COMMUNITY RESOURCES FOR MANAGING AND SHARING 3D IMAGING DATA</title>
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<placeName><region type="state">Californie</region>
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<wicri:noCountry code="subfield">San Diego 92093-0446</wicri:noCountry>
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<author><name sortKey="Larson, Stephen" sort="Larson, Stephen" uniqKey="Larson S" first="Stephen" last="Larson">Stephen Larson</name>
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<front><div type="abstract" xml:lang="en"><p id="P1">Databases have become integral parts of data management, dissemination and mining in biology. At the Second Annual Conference on Electron Tomography, held in Amsterdam in 2001, we proposed that electron tomography data should be shared in a manner analogous to structural data at the protein and sequence scales. At that time, we outlined our progress in creating a database to bring together cell level imaging data across scales, The Cell Centered Database (CCDB). The CCDB was formally launched in 2002 as an on-line repository of high-resolution 3D light and electron microscopic reconstructions of cells and subcellular structures. It contains 2D, 3D and 4D structural and protein distribution information from confocal, multiphoton and electron microscopy, including correlated light and electron microscopy. Many of the data sets are derived from electron tomography of cells and tissues. In the five years since its debut, we have moved the CCDB from a prototype to a stable resource and expanded the scope of the project to include data management and knowledge engineering. Here we provide an update on the CCDB and how it is used by the scientific community. We also describe our work in developing additional knowledge tools, e.g., ontologies, for annotation and query of electron microscopic data.</p>
</div>
</front>
</TEI>
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THE CELL CENTERED DATABASE PROJECT: AN UPDATE ON BUILDING COMMUNITY RESOURCES FOR MANAGING AND SHARING 3D IMAGING DATA

THE CELL CENTERED DATABASE PROJECT: AN UPDATE ON BUILDING COMMUNITY RESOURCES FOR MANAGING AND SHARING 3D IMAGING DATA

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Abstract

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